Rh3BG325500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006991
Physical Location & Seq
Reverse (-)
33843918 .. 33844346
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG325500.1

Sequence Viewer

Length: 429 bp
ATGGTCAATGATGTTATCTATAATAATAATTGGAGATGGCCTTCTCTCTCTCACGAGTTACTAGAGATTCGTGTTTCATTGACCCAAATCATTCCTAACTCTGAGGTTAGTGATTCTGTTCGATGGACTCTTTCTTTGAATGGGGTTTATTCAACTTCTTCTGCATGGAATGCTCTTCGTTTTTCTAGGCCTATTGTTCCTTGGTACCATTTAGTCTGGTTTGGTAGTTGTGTTCCTAGATGGAGCTTCATCTTATGGCTTGCTATTAGAGGAAGGTTATCAACTATGGATCGTGTAAGAATTTTTTCTCCTCTTGCTGCCCATGACTGTGCTTTTGTCTTGCTGCTGATGAGACTCACAACCATCTTTTCTTTGAGTCTGTTTATACCTCTGGCATTTGGACTCACATTTTGTCTAAATGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

142

Amino Acids

16.47

Weight (kDa)

9.49

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 50 - 111 4.1e-11 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 2 cut(s) 139, 153
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 1 cut(s) 297
AoxI GGCC 2 cut(s) 38, 188
ApeKI GCWGC 2 cut(s) 317, 343
ApoI RAATTY 1 cut(s) 300
ArsI GACNNNNNNTTYG 6 cut(s) 118, 150, 317, 349, 393, 425
Asp700I GAANNNNTTC 1 cut(s) 304
Asp718I GGTACC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 204
BauI CACGAG 1 cut(s) 53
BbvI GCAGC 2 cut(s) 304, 330
BccI CCATC 4 cut(s) 30, 117, 234, 371
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 3 cut(s) 62, 186, 237
BisI GCNGC 2 cut(s) 318, 344
BlsI GCNGC 2 cut(s) 319, 345
BmiI GGNNCC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 304, 330
BshFI GGCC 2 cut(s) 40, 190
BshNI GGYRCC 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 2 cut(s) 40, 190
Bsp143I GATC 1 cut(s) 289
BspANI GGCC 2 cut(s) 40, 190
BspCNI CTCAG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 289
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 304, 330
BsuRI GGCC 2 cut(s) 40, 190
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 165, 323
CviJI RGCY 4 cut(s) 40, 190, 246, 259
CviKI_1 RGCY 4 cut(s) 40, 190, 246, 259
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 168, 326
FaiI YATR 6 cut(s) 21, 166, 256, 287, 324, 386
FatI CATG 2 cut(s) 164, 322
Fnu4HI GCNGC 2 cut(s) 318, 344
Fsp4HI GCNGC 2 cut(s) 318, 344
FspBI CTAG 3 cut(s) 62, 186, 237
GluI GCNGC 2 cut(s) 318, 344
HaeIII GGCC 2 cut(s) 40, 190
Hin1II CATG 2 cut(s) 168, 326
HinfI GANTC 6 cut(s) 67, 113, 127, 354, 376, 402
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 51, 267
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 168, 326
KpnI GGTACC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 2 cut(s) 202, 377
Lsp1109I GCAGC 2 cut(s) 304, 330
MaeI CTAG 3 cut(s) 62, 186, 237
MaeIII GTNAC 1 cut(s) 57
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 2 cut(s) 150, 167
MluCI AATT 2 cut(s) 28, 300
MlyI GAGTC 4 cut(s) 121, 348, 385, 396
MnlI CCTC 4 cut(s) 97, 263, 321, 399
MroXI GAANNNNTTC 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 168, 326
NlaIV GGNNCC 1 cut(s) 206
PceI AGGCCT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 180
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 67, 113
PkrI GCNGC 2 cut(s) 319, 345
PleI GAGTC 4 cut(s) 121, 348, 384, 396
PpsI GAGTC 4 cut(s) 121, 348, 384, 396
PspN4I GGNNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 327
SapI GCTCTTC 1 cut(s) 180
SatI GCNGC 2 cut(s) 318, 344
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 4 cut(s) 121, 348, 385, 396
SetI ASST 4 cut(s) 108, 248, 278, 391
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 2 cut(s) 28, 300
SseBI AGGCCT 1 cut(s) 190
SspMI CTAG 3 cut(s) 62, 186, 237
StuI AGGCCT 1 cut(s) 190
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 28, 300
TfiI GAWTC 2 cut(s) 67, 113
TseI GCWGC 2 cut(s) 317, 343
TspDTI ATGAA 2 cut(s) 66, 238
XapI RAATTY 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 3 cut(s) 62, 186, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.