Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004932.1

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Forward (+)

1616 .. 2482

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004932.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgcttaaaattagggagctttgtcgatctttctttgctaatatcattggtgatggtcgtactacttctttgtggtttgataattggcaccctcttggtcctcttactcttagatggtcatctaatatcattgctgattccgctctctctagctctgccatggtcagtgatgttatctataataataattggagatggccttctatctctcatgagttactagagattcgtgtttcattgacccaaatcattcctaactctgaggttagtgattctgttcgatggactctttcttcgaatggggtttattctacttcctctgcatggaatgccctccgtttttctaggcctattgttccttggtatcatttagtctggtttggtagttgtgttcctagatggagcttcatcttatggcttgctattagaggaaggttatcaactgtggatcgtgtaagatttttttctcctcttgctgcccatgaatgtgctttttgtcttgctactgatgagactcacaaccatcttttctttgagtgtgtttatacctctgccatttgggctcacattttgtctaaatgtgatgtgagtaatcctctcctttcttggcagcatttcattccatgggctgctgctaactggaagggtaaatctttttctattgcaatcaaaaagttggcattgcaagctgcagtttatgctatctggcgcgagagaaataaccgcaagttccgtaacgaaaacctcccttctgctgttgtgttcaaggcaattgtggagtccatacggttatgcttattgtcttggaagatccctccttctccttctaacagctatattattcatgaatggagactcccttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

288

Amino Acids

33.21

Weight (kDa)

9.5

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccBSI	CCGCTC	1 cut(s)	143
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	141, 724
AclWI	GGATC	2 cut(s)	456, 805
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	766
AluBI	AGCT	5 cut(s)	19, 153, 405, 689, 834
AluI	AGCT	5 cut(s)	19, 153, 405, 689, 834
Alw26I	GTCTC	2 cut(s)	506, 847
AlwI	GGATC	2 cut(s)	456, 805
AoxI	GGCC	2 cut(s)	197, 347
ApeKI	GCWGC	5 cut(s)	476, 610, 629, 632, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	5 cut(s)	463, 616, 619, 622, 676
BccI	CCATC	6 cut(s)	47, 108, 189, 276, 393, 531
BcoDI	GTCTC	2 cut(s)	506, 847
BfaI	CTAG	4 cut(s)	150, 221, 345, 396
BfmI	CTRYAG	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	5 cut(s)	477, 611, 630, 633, 690
BlsI	GCNGC	5 cut(s)	478, 612, 631, 634, 691
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
Bpu14I	TTCGAA	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	159, 359, 623
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	644
Bse3DI	GCAATG	2 cut(s)	129, 680
Bse8I	GATNNNNATC	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	159, 359, 623
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	2 cut(s)	129, 680
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	5 cut(s)	463, 616, 619, 622, 676
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	2 cut(s)	199, 349
BshNI	GGYRCC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	506, 847
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	199, 349
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	26, 448, 810
Bsp19I	CCATGG	2 cut(s)	159, 623
BspACI	CCGC	2 cut(s)	141, 724
BspANI	GGCC	2 cut(s)	199, 349
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	711
BspHI	TCATGA	2 cut(s)	211, 844
BspLI	GGNNCC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	2 cut(s)	456, 805
BspT104I	TTCGAA	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	87
BsrBI	CCGCTC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	129, 680
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	3 cut(s)	159, 359, 623
BssMI	GATC	3 cut(s)	26, 448, 810
BssT1I	CCWWGG	3 cut(s)	159, 359, 623
Bst4CI	ACNGT	2 cut(s)	445, 789
BstAPI	GCANNNNNTGC	2 cut(s)	329, 698
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	420, 687
BstDEI	CTNAG	2 cut(s)	110, 261
BstDSI	CCRYGG	2 cut(s)	159, 623
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	3 cut(s)	29, 451, 813
BstMAI	GTCTC	2 cut(s)	506, 847
BstMBI	GATC	3 cut(s)	26, 448, 810
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 329, 560, 686, 698
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	5 cut(s)	463, 616, 619, 622, 676
BstX2I	RGATCY	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	199, 349
BtgI	CCRYGG	2 cut(s)	159, 623
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	420, 687
CciI	TCATGA	2 cut(s)	211, 844
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	6 cut(s)	160, 212, 324, 482, 624, 845
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	110, 261
DpnI	GATC	3 cut(s)	28, 450, 812
DpnII	GATC	3 cut(s)	26, 448, 810
Eco130I	CCWWGG	3 cut(s)	159, 359, 623
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	98
EcoT14I	CCWWGG	3 cut(s)	159, 359, 623
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	3 cut(s)	159, 359, 623
FaeI	CATG	6 cut(s)	163, 215, 327, 485, 627, 848
FatI	CATG	6 cut(s)	159, 211, 323, 481, 623, 844
Fnu4HI	GCNGC	5 cut(s)	477, 611, 630, 633, 690
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	5 cut(s)	477, 611, 630, 633, 690
FspBI	CTAG	4 cut(s)	150, 221, 345, 396
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	5 cut(s)	477, 611, 630, 633, 690
HaeIII	GGCC	2 cut(s)	199, 349
HhaI	GCGC	1 cut(s)	711
Hin1II	CATG	6 cut(s)	163, 215, 327, 485, 627, 848
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HinfI	GANTC	7 cut(s)	137, 226, 272, 286, 514, 779, 855
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	212, 845
HpyAV	CCTTC	6 cut(s)	210, 426, 637, 759, 828, 834
HpyCH4III	ACNGT	2 cut(s)	445, 789
HpyCH4V	TGCA	4 cut(s)	323, 665, 685, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 329, 560, 686, 698
HpyF3I	CTNAG	2 cut(s)	110, 261
Hsp92II	CATG	6 cut(s)	163, 215, 327, 485, 627, 848
HspAI	GCGC	1 cut(s)	709
Kzo9I	GATC	3 cut(s)	26, 448, 810
LmnI	GCTCC	2 cut(s)	16, 402
LpnPI	CCDG	3 cut(s)	361, 625, 691
Lsp1109I	GCAGC	5 cut(s)	463, 616, 619, 622, 676
MaeI	CTAG	4 cut(s)	150, 221, 345, 396
MaeIII	GTNAC	2 cut(s)	216, 734
MalI	GATC	3 cut(s)	28, 450, 812
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	3 cut(s)	26, 448, 810
MboII	GAAGA	2 cut(s)	285, 820
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	9, 82, 187, 771
MlyI	GAGTC	4 cut(s)	280, 508, 788, 849
MseI	TTAA	2 cut(s)	6, 865
MslI	CAYNNNNRTG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	334
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	5 cut(s)	140, 329, 560, 686, 698
NcoI	CCATGG	2 cut(s)	159, 623
NdeII	GATC	3 cut(s)	26, 448, 810
NlaIII	CATG	6 cut(s)	163, 215, 327, 485, 627, 848
NlaIV	GGNNCC	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	296
PagI	TCATGA	2 cut(s)	211, 844
PceI	AGGCCT	1 cut(s)	349
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	137, 226, 272
PkrI	GCNGC	5 cut(s)	478, 612, 631, 634, 691
PleI	GAGTC	4 cut(s)	280, 508, 787, 849
PpsI	GAGTC	4 cut(s)	280, 508, 787, 849
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	810
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	6, 865
SatI	GCNGC	5 cut(s)	477, 611, 630, 633, 690
Sau3AI	GATC	3 cut(s)	26, 448, 810
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	4 cut(s)	280, 508, 788, 849
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	9 cut(s)	21, 155, 267, 407, 437, 551, 691, 747, 836
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	296
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	4 cut(s)	9, 82, 187, 771
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	141, 724
SspMI	CTAG	4 cut(s)	150, 221, 345, 396
StuI	AGGCCT	1 cut(s)	349
StyI	CCWWGG	3 cut(s)	159, 359, 623
TaaI	ACNGT	2 cut(s)	445, 789
TaqI	TCGA	3 cut(s)	25, 280, 296
TasI	AATT	4 cut(s)	9, 82, 187, 771
TfiI	GAWTC	3 cut(s)	137, 226, 272
Tru1I	TTAA	2 cut(s)	6, 865
Tru9I	TTAA	2 cut(s)	6, 865
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	5 cut(s)	476, 610, 629, 632, 689
TspDTI	ATGAA	6 cut(s)	225, 397, 498, 607, 833, 861
TspGWI	ACGGA	2 cut(s)	326, 722
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	4 cut(s)	150, 221, 345, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.