Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Reverse (-)

16528880 .. 16531065

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGCTCAGTGTCAAGAGATGTATCAAGATACTCAAGCTTTGGCACTTGCTTCCAGAGATAACGCCTTCGCTTCGACAAAATATTAGTGGATACAACATCTTTGATTGGAAGGGAAGAGTTCGTTCACGCTCTAAGAAGCGCTCCAGTAGTACCCCTCCAAGGCTTATCACCTCTCAGAACTGCGTGAAAGGGAAGAATATTGAGATTGTTCCTTCTACTGTTTTGGTTGAGGCAGGACAGTCCTATGCCAAGGGCTCTGCTTGGGTCAAGAAGTCGACTACAGGTGTTGCTAGAAGTCCTGTCAAGCCACCTGAGTCCCATCTTCCTGAATCAGTTTTGGTGTCAGCTATCCCGTCGGAGGATTCCTTTCCTTATCCACCGGGTTGGGGTGCTATGTCTTCAAAATCCAGGAAGAGATGGCGTCATAAGTGGAATATCAGCAGAAGCAGCGCTGCTGACCATATTTCTAAGGTCTCAGGGTCCCCACGAGCTTTGGTCTCGGGTGGATCGTCCTCTGAGAGTAATGCCCCTGCTATTTTGGATTCAACCCTTCCGAGTTGGAGATTAGATACCAATTATTGTTGTTCCGAGTTGGGTCGGATTTGGATCGTGTGGGACCCTTCGGTTTCGGTTTTGGTCTTTAAGAAGACGGATCAATTGATGATCCTGGTTGGGGACTTTGACCAGATAGCTGCTACTTCTGATCACTATTCTGTCCTTCAAACTTCAATCCCCATGAGAGGTTTAGAGGAGTTTCAGAACTGTTTAAGAGATAGTGATTTGGTGGATATTCCTAGTCGTGGGGTCCATTACACTTGGTCAAATCATCAAGATGATAATCCGATCATAAGGAAGTTGGATAGAGCTATTGCCAATGGAGATTGGTTCTCTTCTTTTCCTAGTGCGATTGCTGTCTTTGAGCTGTCAGGGGTTTCAGATCACTCTCCTTGTATTATTATCCTGGAAAACCTCCCAAAGAGATCTAAGAAATGTTTCAGATATTTCTCCTTCCTTTCAACTCATCCTACCTTTTTGGTGTCCCTTACTGTTGCTTGGGAGGAGCAGATTCCTGTTGGTTCTCACATGTTTTCTTTAGGGGAACATTTAAAAGCTGCCAAGAAGTGTTGTAAGCTTTTGAACAGGCAAGGGTTTGGCAATATCCAGCATAAAACCAAAGAGGCTCTGGATTCTTTGGAATCGATTCAGTCTCAGCTATTAACCAACCCTTCTGATTCTCTTTTTAGAGTTGAGCATGTTGCCAGGAAAAAGTGGAACTTCTTTGCTGCTGCTCTAGAGTCTTTTTACAGACAGAAATCAAGAATTAAATGGTTGCAAGATGGCGACGCTAATACACGGTTCTTCCATAAAGTCATTCTTGCAAATCAGGCTAAAAATCTGATCAAGTTTCTTCGCATGGATGATGATGTAAGAGTGGAGAATGTTACTCAGGTCAAAGAAATGATTGTAGCCTATTATACCCACCTTTTGGGCTCTGACAGCGACATTCTCACTCCCGATTCGGTTCAGAGAATCAAAGATATCCATCCTTTTCGCTGCAATGATACACTGGCGTCTCGTCTCTCTGCTCTCCCGTCTGATAAGGAGATAACTGCTGCGGTCTTTGCAATGCCTCGCAACAAGGCTCCGGGTCCTGACAGCTTCACTGCGGAATTCTTTTGGGAATCTTGGTTTGTGGTCAAGGATAGTACTATTGCTGCTGTTAAAGAATTTTTCAGAACTGGTCATCTCCTCAAGAGGTTCAACGCTACAGCAATCACTCTCATTCCTAAAGTTACAGGAGTAGATCAACTCTCTATGTTTAGACCTGTTTCGTGCTGCACCGTAGTCTATAAAATCATTACTGATAACACTAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 zf-CCHC_4 zf-RVT

Protein Analysis

626

Amino Acids

70.56

Weight (kDa)

9.45

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1486
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	2 cut(s)	1616, 1667
AclWI	GGATC	4 cut(s)	514, 614, 658, 660
AcsI	RAATTY	2 cut(s)	1670, 1727
AcyI	GRCGYC	2 cut(s)	421, 1571
AfaI	GTAC	2 cut(s)	151, 1708
AfeI	AGCGCT	2 cut(s)	140, 451
AfiI	CCNNNNNNNGG	7 cut(s)	159, 358, 386, 673, 740, 800, 1486
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	7 cut(s)	402, 546, 722, 729, 1017, 1138, 1762
AjnI	CCWGG	4 cut(s)	407, 666, 960, 1259
Alw26I	GTCTC	5 cut(s)	478, 502, 1212, 1578, 1583
AlwI	GGATC	4 cut(s)	514, 614, 658, 660
Ama87I	CYCGRG	1 cut(s)	499
Aor51HI	AGCGCT	2 cut(s)	140, 451
ApoI	RAATTY	2 cut(s)	1670, 1727
Asp700I	GAANNNNTTC	2 cut(s)	992, 1200
AspLEI	GCGC	2 cut(s)	141, 452
AspS9I	GGNCC	4 cut(s)	480, 616, 805, 1649
AsuC2I	CCSGG	2 cut(s)	381, 1647
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	4 cut(s)	480, 616, 805, 1649
BanII	GRGCYC	2 cut(s)	257, 1493
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	390, 653
BccI	CCATC	4 cut(s)	327, 411, 1331, 1551
BciT130I	CCWGG	4 cut(s)	409, 668, 962, 1261
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	2 cut(s)	703, 1398
BcnI	CCSGG	2 cut(s)	381, 1647
BcoDI	GTCTC	5 cut(s)	478, 502, 1212, 1578, 1583
BfaI	CTAG	5 cut(s)	291, 795, 900, 1292, 1872
BfmI	CTRYAG	2 cut(s)	279, 1767
BfoI	RGCGCY	2 cut(s)	142, 453
BfuI	GTATCC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	980
BmcAI	AGTACT	1 cut(s)	1708
Bme1390I	CCNGG	6 cut(s)	381, 409, 668, 962, 1261, 1647
Bme18I	GGWCC	4 cut(s)	480, 616, 805, 1649
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	480, 616, 805, 1649
BmiI	GGNNCC	7 cut(s)	481, 482, 617, 618, 806, 1644, 1650
BmrFI	CCNGG	6 cut(s)	381, 409, 668, 962, 1261, 1647
BpiI	GAAGAC	2 cut(s)	390, 653
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	17, 1736
BpuMI	CCSGG	2 cut(s)	381, 1647
Bsa29I	ATCGAT	1 cut(s)	1199
BsaBI	GATNNNNATC	3 cut(s)	605, 837, 1542
BsaHI	GRCGYC	2 cut(s)	421, 1571
BsaI	GGTCTC	2 cut(s)	478, 502
BsaJI	CCNNGG	2 cut(s)	158, 249
Bsc4I	CCNNNNNNNGG	7 cut(s)	159, 358, 386, 673, 740, 800, 1486
Bse1I	ACTGG	3 cut(s)	144, 1572, 1744
Bse3DI	GCAATG	2 cut(s)	1564, 1632
Bse8I	GATNNNNATC	3 cut(s)	605, 837, 1542
BseBI	CCWGG	4 cut(s)	409, 668, 962, 1261
BseCI	ATCGAT	1 cut(s)	1199
BseDI	CCNNGG	2 cut(s)	158, 249
BseGI	GGATG	3 cut(s)	1021, 1423, 1543
BseJI	GATNNNNATC	3 cut(s)	605, 837, 1542
BseLI	CCNNNNNNNGG	7 cut(s)	159, 358, 386, 673, 740, 800, 1486
BseMI	GCAATG	2 cut(s)	1564, 1632
BseMII	CTCAG	7 cut(s)	19, 188, 303, 489, 507, 1223, 1460
BseNI	ACTGG	3 cut(s)	144, 1572, 1744
BseRI	GAGGAG	3 cut(s)	764, 1073, 1739
BsgI	GTGCAG	1 cut(s)	1822
BshVI	ATCGAT	1 cut(s)	1199
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	380, 1646
BslFI	GGGAC	5 cut(s)	301, 466, 629, 689, 1024
BslI	CCNNNNNNNGG	7 cut(s)	159, 358, 386, 673, 740, 800, 1486
BsmAI	GTCTC	5 cut(s)	478, 502, 1212, 1578, 1583
BsmBI	CGTCTC	2 cut(s)	1578, 1583
BsmFI	GGGAC	5 cut(s)	301, 466, 629, 689, 1024
Bso31I	GGTCTC	2 cut(s)	478, 502
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	257, 1493
BspACI	CCGC	2 cut(s)	1616, 1667
BspCNI	CTCAG	7 cut(s)	18, 187, 304, 488, 508, 1222, 1459
BspDI	ATCGAT	1 cut(s)	1199
BspLI	GGNNCC	7 cut(s)	481, 482, 617, 618, 806, 1644, 1650
BspPI	GGATC	4 cut(s)	514, 614, 658, 660
BspTNI	GGTCTC	2 cut(s)	478, 502
BsrDI	GCAATG	2 cut(s)	1564, 1632
BsrI	ACTGG	3 cut(s)	144, 1572, 1744
BssECI	CCNNGG	2 cut(s)	158, 249
BssNI	GRCGYC	2 cut(s)	421, 1571
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	2 cut(s)	158, 249
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	4 cut(s)	409, 668, 962, 1261
Bst4CI	ACNGT	6 cut(s)	220, 240, 764, 1048, 1356, 1843
Bst6I	CTCTTC	3 cut(s)	109, 407, 895
BstACI	GRCGYC	2 cut(s)	421, 1571
BstF5I	GGATG	3 cut(s)	1021, 1423, 1543
BstH2I	RGCGCY	2 cut(s)	142, 453
BstHHI	GCGC	2 cut(s)	141, 452
BstMAI	GTCTC	5 cut(s)	478, 502, 1212, 1578, 1583
BstMWI	GCNNNNNNNGC	4 cut(s)	447, 1385, 1497, 1622
BstNI	CCWGG	4 cut(s)	409, 668, 962, 1261
BstNSI	RCATGY	2 cut(s)	1087, 1256
BstSCI	CCNGG	6 cut(s)	379, 407, 666, 960, 1259, 1645
BstSFI	CTRYAG	2 cut(s)	279, 1767
BstV2I	GAAGAC	2 cut(s)	390, 653
BstX2I	RGATCY	1 cut(s)	980
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	980
Bsu15I	ATCGAT	1 cut(s)	1199
BsuI	GTATCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	1199
BtsCI	GGATG	3 cut(s)	1021, 1423, 1543
BtsI	GCAGTG	1 cut(s)	1662
BtsIMutI	CAGTG	3 cut(s)	13, 1565, 1662
CfoI	GCGC	2 cut(s)	141, 452
Cfr13I	GGNCC	4 cut(s)	480, 616, 805, 1649
ClaI	ATCGAT	1 cut(s)	1199
CseI	GACGC	3 cut(s)	410, 1352, 1560
Csp6I	GTAC	2 cut(s)	150, 1707
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	4 cut(s)	736, 1084, 1253, 1414
CviQI	GTAC	2 cut(s)	150, 1707
DraI	TTTAAA	1 cut(s)	1107
Eam1104I	CTCTTC	3 cut(s)	109, 407, 895
EarI	CTCTTC	3 cut(s)	109, 407, 895
Eco130I	CCWWGG	2 cut(s)	158, 249
Eco24I	GRGCYC	2 cut(s)	257, 1493
Eco31I	GGTCTC	2 cut(s)	478, 502
Eco32I	GATATC	1 cut(s)	1540
Eco47I	GGWCC	4 cut(s)	480, 616, 805, 1649
Eco47III	AGCGCT	2 cut(s)	140, 451
Eco88I	CYCGRG	1 cut(s)	499
EcoO109I	RGGNCCY	3 cut(s)	480, 616, 1649
EcoRI	GAATTC	1 cut(s)	1670
EcoRII	CCWGG	4 cut(s)	407, 666, 960, 1259
EcoRV	GATATC	1 cut(s)	1540
EcoT14I	CCWWGG	2 cut(s)	158, 249
EcoT38I	GRGCYC	2 cut(s)	257, 1493
ErhI	CCWWGG	2 cut(s)	158, 249
Esp3I	CGTCTC	2 cut(s)	1578, 1583
FaeI	CATG	4 cut(s)	739, 1087, 1256, 1417
FalI	AAGNNNNNCTT	4 cut(s)	1259, 1291, 1359, 1391
FaqI	GGGAC	5 cut(s)	301, 466, 629, 689, 1024
FatI	CATG	4 cut(s)	735, 1083, 1252, 1413
FbaI	TGATCA	2 cut(s)	703, 1398
FblI	GTMKAC	1 cut(s)	275
FokI	GGATG	3 cut(s)	1008, 1430, 1530
FriOI	GRGCYC	2 cut(s)	257, 1493
FspBI	CTAG	5 cut(s)	291, 795, 900, 1292, 1872
GlaI	GCGC	2 cut(s)	140, 451
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	2 cut(s)	142, 453
HapII	CCGG	2 cut(s)	380, 1646
HgaI	GACGC	3 cut(s)	410, 1352, 1560
HhaI	GCGC	2 cut(s)	141, 452
Hin1I	GRCGYC	2 cut(s)	421, 1571
Hin1II	CATG	4 cut(s)	739, 1087, 1256, 1417
Hin6I	GCGC	2 cut(s)	139, 450
HinP1I	GCGC	2 cut(s)	139, 450
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HindIII	AAGCTT	2 cut(s)	35, 1130
HpaII	CCGG	2 cut(s)	380, 1646
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	125, 276
Hpy8I	GTNNAC	2 cut(s)	125, 276
Hpy99I	CGWCG	2 cut(s)	358, 1346
HpyAV	CCTTC	8 cut(s)	75, 103, 222, 560, 630, 728, 1018, 1236
HpyCH4III	ACNGT	6 cut(s)	220, 240, 764, 1048, 1356, 1843
HpyCH4V	TGCA	5 cut(s)	1333, 1379, 1557, 1625, 1839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	447, 1385, 1497, 1622
Hsp92I	GRCGYC	2 cut(s)	421, 1571
Hsp92II	CATG	4 cut(s)	739, 1087, 1256, 1417
HspAI	GCGC	2 cut(s)	139, 450
KflI	GGGWCCC	2 cut(s)	480, 616
Ksp22I	TGATCA	2 cut(s)	703, 1398
LmnI	GCTCC	3 cut(s)	146, 1060, 1648
MaeI	CTAG	5 cut(s)	291, 795, 900, 1292, 1872
MaeIII	GTNAC	2 cut(s)	1441, 1792
MboII	GAAGA	9 cut(s)	126, 205, 314, 390, 424, 658, 882, 1351, 1400
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	2 cut(s)	257, 1493
MluCI	AATT	5 cut(s)	574, 656, 1320, 1670, 1727
MlyI	GAGTC	2 cut(s)	323, 1304
MmeI	TCCRAC	4 cut(s)	336, 539, 578, 837
MroXI	GAANNNNTTC	2 cut(s)	992, 1200
MseI	TTAA	7 cut(s)	642, 767, 1106, 1217, 1323, 1722, 1879
MslI	CAYNNNNRTG	1 cut(s)	831
MspI	CCGG	2 cut(s)	380, 1646
MspR9I	CCNGG	6 cut(s)	381, 409, 668, 962, 1261, 1647
MunI	CAATTG	1 cut(s)	656
MvaI	CCWGG	4 cut(s)	409, 668, 962, 1261
MwoI	GCNNNNNNNGC	4 cut(s)	447, 1385, 1497, 1622
NciI	CCSGG	2 cut(s)	381, 1647
NlaIII	CATG	4 cut(s)	739, 1087, 1256, 1417
NlaIV	GGNNCC	7 cut(s)	481, 482, 617, 618, 806, 1644, 1650
NspI	RCATGY	2 cut(s)	1087, 1256
PciI	ACATGT	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PdmI	GAANNNNTTC	2 cut(s)	992, 1200
PflMI	CCANNNNNTGG	1 cut(s)	1486
PfoI	TCCNGGA	2 cut(s)	407, 960
PleI	GAGTC	2 cut(s)	322, 1303
PpsI	GAGTC	2 cut(s)	322, 1303
PpuMI	RGGWCCY	3 cut(s)	480, 616, 1649
PscI	ACATGT	1 cut(s)	1083
Psp5II	RGGWCCY	3 cut(s)	480, 616, 1649
Psp6I	CCWGG	4 cut(s)	407, 666, 960, 1259
PspGI	CCWGG	4 cut(s)	407, 666, 960, 1259
PspN4I	GGNNCC	7 cut(s)	481, 482, 617, 618, 806, 1644, 1650
PspPI	GGNCC	4 cut(s)	480, 616, 805, 1649
PspPPI	RGGWCCY	3 cut(s)	480, 616, 1649
PsuI	RGATCY	1 cut(s)	980
RsaI	GTAC	2 cut(s)	151, 1708
RsaNI	GTAC	2 cut(s)	150, 1707
RseI	CAYNNNNRTG	1 cut(s)	831
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	7 cut(s)	642, 767, 1106, 1217, 1323, 1722, 1879
Sau96I	GGNCC	4 cut(s)	480, 616, 805, 1649
ScaI	AGTACT	1 cut(s)	1708
SchI	GAGTC	2 cut(s)	323, 1304
ScrFI	CCNGG	6 cut(s)	381, 409, 668, 962, 1261, 1647
SduI	GDGCHC	2 cut(s)	257, 1493
SfcI	CTRYAG	2 cut(s)	279, 1767
SinI	GGWCC	4 cut(s)	480, 616, 805, 1649
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	32, 1751
SmoI	CTYRAG	2 cut(s)	32, 1751
Sse9I	AATT	5 cut(s)	574, 656, 1320, 1670, 1727
SsiI	CCGC	2 cut(s)	1616, 1667
SspI	AATATT	2 cut(s)	82, 199
SspMI	CTAG	5 cut(s)	291, 795, 900, 1292, 1872
StyD4I	CCNGG	6 cut(s)	379, 407, 666, 960, 1259, 1645
StyI	CCWWGG	2 cut(s)	158, 249
TaaI	ACNGT	6 cut(s)	220, 240, 764, 1048, 1356, 1843
TaqI	TCGA	3 cut(s)	73, 275, 1199
TasI	AATT	5 cut(s)	574, 656, 1320, 1670, 1727
TatI	WGTACW	1 cut(s)	1706
Tru1I	TTAA	7 cut(s)	642, 767, 1106, 1217, 1323, 1722, 1879
Tru9I	TTAA	7 cut(s)	642, 767, 1106, 1217, 1323, 1722, 1879
TscAI	CASTG	3 cut(s)	13, 1572, 1669
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	3 cut(s)	13, 1572, 1669
Van91I	CCANNNNNTGG	1 cut(s)	1486
VpaK11BI	GGWCC	4 cut(s)	480, 616, 805, 1649
XapI	RAATTY	2 cut(s)	1670, 1727
XbaI	TCTAGA	1 cut(s)	1291
XceI	RCATGY	2 cut(s)	1087, 1256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1180
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	2 cut(s)	992, 1200
XspI	CTAG	5 cut(s)	291, 795, 900, 1292, 1872
ZrmI	AGTACT	1 cut(s)	1708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.