FvH4_2g05581

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006991
Physical Location & Seq
Forward (+)
4581304 .. 4583189
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05581.t1

Sequence Viewer

Length: 1272 bp
ATGAAGGGTGCATCTAGAAGGGTTGTGATCACGGTTCTTTCTAGGCTTTTACATAAGAAAATTCAAGCTCTTCCTGCCTTTAGGTACCACTGGAGATGTGAATCAATCAAGCTTGCACATTTAGCTTTTGCTGATGACCTCTTTTTATTTTGTGGTGGTGATTATCAATCAGCTCGGGTGTTAAAGGAGACCTTAAATTCATTCTATGGTCTCTCAGGTCTGGCTGCAAATGCAAATAAGAGCAACATTTATCTCTTGGGTGTTCAAGTTGATGAAGCCTCTCAGATTAGAAATTGTTTTGGCTTTCCAATGGGCTCCACTCCTTTTAAGTATCTTGGAATCCCTCTTATTACCACAAAACTTTCCTTAAGTGATTGTTCGCCTTTGGTAGAGCGGGTGGTTTCAAGAATTCAAAGTTGGGAGAATAAGCTGCTCTCTTATGCCGGTCGTCTGCAACTTGTCAAATCTGTTTTATGTAGTTTGCAGGTGTTTTGGGCTTCTCATCTCTTTTTGCCGAAAAAGATCCATATGTTAATTGAGCAGAATTTAAGATGTTTTTTGTGGTCTGGAAGTTGTACAAGCCATTATTCTTCAAAAGTGGCTTGGGAGGTTGTTTGTGCTTCTACAAGTGAGGGAGGTCTGGGAATCAAAAGTCTTCACATCTGGAACAAGGCTCTAATGGCGAGGCATATTTGGATTCTTTTGACAGATGATTCTAGTCTTTGGTCTTCTTGGATCAAAGTTAATTTCTTGAGAGATAAAAGCTTTTGGATGGTGTCTACACCCCAAATTTGCTCCTGGAATTGGAGGAAGTTGTTGAAGATTCGAGATCTTATTCGTCCTCTTATTAAGCATATTATTTGTGATGGAAAATCTACTTATTTTTGGCATGATTATTGGCACCCTTTTGGCCCTTTGCTGCCTAGGTTGGGGCCTGGTGCTATGATTAATTCTGGTATTTCTTCCAATGCCTTGGTTAGTTCTATTGTGATGGGTGAGTCTTGGTGTTGGCCTCTTTCTACTAATTCTGCCATTCTTAGAGTTGCAAGTAATCTAGAAGGTCTTATTCCAAAATCAAGTTGCAAGGATTCTTGTATTTGGTTACCTTCTACTTCTGGAATTTTCTCTACAGCTTCTACGATGGATCAGATTCTGATTCATCATCTTGTTGTTGATTGGGCAAAGATTGTGTGGTTTACCAATAATATTCCTAGAGCCAGTTTCATCCTTTGGTTGGCTGTTCATGGTTTTGTTTTGCTTTCCTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

424

Amino Acids

47.81

Weight (kDa)

9.51

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 15 - 115 6.5e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 475
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 2 cut(s) 84, 900
AccBSI CCGCTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 779
AciI CCGC 1 cut(s) 394
AclWI GGATC 3 cut(s) 517, 743, 1152
AcsI RAATTY 6 cut(s) 60, 196, 408, 544, 789, 1119
AfaI GTAC 2 cut(s) 86, 577
AfiI CCNNNNNNNGG 3 cut(s) 804, 929, 1234
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 6 cut(s) 65, 266, 405, 413, 594, 820
AjnI CCWGG 2 cut(s) 797, 934
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AluBI AGCT 7 cut(s) 68, 112, 125, 173, 430, 765, 1133
AluI AGCT 7 cut(s) 68, 112, 125, 173, 430, 765, 1133
Alw26I GTCTC 2 cut(s) 182, 215
AlwI GGATC 3 cut(s) 517, 743, 1152
AlwNI CAGNNNCTG 1 cut(s) 1153
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 3 cut(s) 910, 932, 1010
ApeKI GCWGC 3 cut(s) 224, 430, 919
ApoI RAATTY 6 cut(s) 60, 196, 408, 544, 789, 1119
AseI ATTAAT 1 cut(s) 948
Asp718I GGTACC 1 cut(s) 84
AspA2I CCTAGG 1 cut(s) 923
AspS9I GGNCC 2 cut(s) 911, 932
AsuHPI GGTGA 2 cut(s) 170, 1007
AvaI CYCGRG 1 cut(s) 174
AvrII CCTAGG 1 cut(s) 923
BanI GGYRCC 2 cut(s) 84, 900
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 2 cut(s) 647, 720
BbvI GCAGC 3 cut(s) 211, 417, 906
BccI CCATC 4 cut(s) 766, 860, 985, 1135
BciT130I CCWGG 2 cut(s) 799, 936
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 182, 215
BfaI CTAG 6 cut(s) 15, 42, 717, 924, 1055, 1212
BfmI CTRYAG 1 cut(s) 1128
BfrI CTTAAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 475
BglII AGATCT 1 cut(s) 829
BisI GCNGC 3 cut(s) 225, 431, 920
BlnI CCTAGG 1 cut(s) 923
BlsI GCNGC 3 cut(s) 226, 432, 921
Bme1390I CCNGG 2 cut(s) 799, 936
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 911, 932
BmiI GGNNCC 4 cut(s) 86, 316, 902, 933
BmrFI CCNGG 2 cut(s) 799, 936
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 647, 720
BpmI CTGGAG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 100
BsaI GGTCTC 2 cut(s) 182, 215
BsaJI CCNNGG 2 cut(s) 923, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 804, 929, 1234
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 95, 1218
Bse8I GATNNNNATC 1 cut(s) 100
BseBI CCWGG 2 cut(s) 799, 936
BseDI CCNNGG 2 cut(s) 923, 972
BseGI GGATG 2 cut(s) 777, 1224
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 804, 929, 1234
BseMII CTCAG 2 cut(s) 228, 296
BseNI ACTGG 2 cut(s) 95, 1218
BseXI GCAGC 3 cut(s) 211, 417, 906
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 3 cut(s) 912, 934, 1012
BshNI GGYRCC 2 cut(s) 84, 900
BsiEI CGRYCG 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 804, 929, 1234
BsmAI GTCTC 2 cut(s) 182, 215
BsnI GGCC 3 cut(s) 912, 934, 1012
Bso31I GGTCTC 2 cut(s) 182, 215
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 5 cut(s) 27, 522, 735, 829, 1144
BspACI CCGC 1 cut(s) 394
BspANI GGCC 3 cut(s) 912, 934, 1012
BspCNI CTCAG 2 cut(s) 227, 295
BspLI GGNNCC 4 cut(s) 86, 316, 902, 933
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 3 cut(s) 517, 743, 1152
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 2 cut(s) 84, 900
BspTI CTTAAG 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 182, 215
BsrBI CCGCTC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 575
BsrI ACTGG 2 cut(s) 95, 1218
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 923, 972
BssMI GATC 5 cut(s) 27, 522, 735, 829, 1144
BssT1I CCWWGG 2 cut(s) 923, 972
Bst2UI CCWGG 2 cut(s) 799, 936
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 214, 282, 1037
BstEII GGTNACC 1 cut(s) 1101
BstF5I GGATG 2 cut(s) 777, 1224
BstKTI GATC 5 cut(s) 30, 525, 738, 832, 1147
BstMAI GTCTC 2 cut(s) 182, 215
BstMBI GATC 5 cut(s) 27, 522, 735, 829, 1144
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 4 cut(s) 74, 122, 230, 680
BstNI CCWGG 2 cut(s) 799, 936
BstPI GGTNACC 1 cut(s) 1101
BstSCI CCNGG 2 cut(s) 797, 934
BstSFI CTRYAG 1 cut(s) 1128
BstV1I GCAGC 3 cut(s) 211, 417, 906
BstV2I GAAGAC 2 cut(s) 647, 720
BstX2I RGATCY 2 cut(s) 522, 829
BstXI CCANNNNNNTGG 1 cut(s) 973
BstYI RGATCY 2 cut(s) 522, 829
BsuRI GGCC 3 cut(s) 912, 934, 1012
BtsCI GGATG 2 cut(s) 777, 1224
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 1153
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 911, 932
Csp6I GTAC 2 cut(s) 85, 576
CviAII CATG 2 cut(s) 890, 1244
CviQI GTAC 2 cut(s) 85, 576
DdeI CTNAG 3 cut(s) 214, 282, 1037
DpnI GATC 5 cut(s) 29, 524, 737, 831, 1146
DpnII GATC 5 cut(s) 27, 522, 735, 829, 1144
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 923, 972
Eco24I GRGCYC 1 cut(s) 317
Eco31I GGTCTC 2 cut(s) 182, 215
Eco88I CYCGRG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 1101
EcoO109I RGGNCCY 1 cut(s) 932
EcoO65I GGTNACC 1 cut(s) 1101
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 797, 934
EcoT14I CCWWGG 2 cut(s) 923, 972
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 923, 972
FaeI CATG 2 cut(s) 893, 1247
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 2 cut(s) 889, 1243
FauI CCCGC 1 cut(s) 387
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 3 cut(s) 225, 431, 920
FokI GGATG 2 cut(s) 784, 1211
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 225, 431, 920
FspBI CTAG 6 cut(s) 15, 42, 717, 924, 1055, 1212
GluI GCNGC 3 cut(s) 225, 431, 920
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 3 cut(s) 912, 934, 1012
HapII CCGG 1 cut(s) 444
Hin1II CATG 2 cut(s) 893, 1247
HindIII AAGCTT 2 cut(s) 110, 763
HpaII CCGG 1 cut(s) 444
HphI GGTGA 2 cut(s) 170, 1007
Hpy166II GTNNAC 2 cut(s) 780, 1197
Hpy188I TCNGA 3 cut(s) 285, 1149, 1155
Hpy188III TCNNGA 8 cut(s) 15, 405, 567, 664, 751, 827, 1055, 1116
Hpy8I GTNNAC 2 cut(s) 780, 1197
HpyAV CCTTC 3 cut(s) 12, 1052, 1116
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 8 cut(s) 11, 116, 227, 233, 454, 484, 1046, 1083
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 122, 230, 680
HpyF3I CTNAG 3 cut(s) 214, 282, 1037
Hsp92II CATG 2 cut(s) 893, 1247
KpnI GGTACC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 5 cut(s) 27, 522, 735, 829, 1144
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 320, 800
Lsp1109I GCAGC 3 cut(s) 211, 417, 906
LweI GCATC 1 cut(s) 20
MaeI CTAG 6 cut(s) 15, 42, 717, 924, 1055, 1212
MaeIII GTNAC 1 cut(s) 1101
MalI GATC 5 cut(s) 29, 524, 737, 831, 1146
MbiI CCGCTC 1 cut(s) 394
MboI GATC 5 cut(s) 27, 522, 735, 829, 1144
MboII GAAGA 6 cut(s) 62, 582, 647, 720, 832, 954
MflI RGATCY 2 cut(s) 522, 829
MhlI GDGCHC 1 cut(s) 317
MlyI GAGTC 1 cut(s) 1007
MseI TTAA 9 cut(s) 182, 194, 327, 368, 533, 548, 744, 849, 948
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 799, 936
MvaI CCWGG 2 cut(s) 799, 936
MwoI GCNNNNNNNGC 4 cut(s) 74, 122, 230, 680
NdeI CATATG 1 cut(s) 528
NdeII GATC 5 cut(s) 27, 522, 735, 829, 1144
NlaIII CATG 2 cut(s) 893, 1247
NlaIV GGNNCC 4 cut(s) 86, 316, 902, 933
PaqCI CACCTGC 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 9 cut(s) 101, 339, 645, 697, 713, 823, 1088, 1150, 1156
PfoI TCCNGGA 1 cut(s) 797
PkrI GCNGC 3 cut(s) 226, 432, 921
PleI GAGTC 1 cut(s) 1006
PpsI GAGTC 1 cut(s) 1006
PshBI ATTAAT 1 cut(s) 948
Psp6I CCWGG 2 cut(s) 797, 934
PspEI GGTNACC 1 cut(s) 1101
PspGI CCWGG 2 cut(s) 797, 934
PspN4I GGNNCC 4 cut(s) 86, 316, 902, 933
PspPI GGNCC 2 cut(s) 911, 932
PstNI CAGNNNCTG 1 cut(s) 1153
PsuI RGATCY 2 cut(s) 522, 829
RsaI GTAC 2 cut(s) 86, 577
RsaNI GTAC 2 cut(s) 85, 576
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 9 cut(s) 182, 194, 327, 368, 533, 548, 744, 849, 948
SatI GCNGC 3 cut(s) 225, 431, 920
Sau3AI GATC 5 cut(s) 27, 522, 735, 829, 1144
Sau96I GGNCC 2 cut(s) 911, 932
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 2 cut(s) 799, 936
SduI GDGCHC 1 cut(s) 317
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 1128
SmlI CTYRAG 2 cut(s) 367, 751
SmoI CTYRAG 2 cut(s) 367, 751
SsiI CCGC 1 cut(s) 394
SspI AATATT 1 cut(s) 1207
SspMI CTAG 6 cut(s) 15, 42, 717, 924, 1055, 1212
StyD4I CCNGG 2 cut(s) 797, 934
StyI CCWWGG 2 cut(s) 923, 972
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 826
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 9 cut(s) 101, 339, 645, 697, 713, 823, 1088, 1150, 1156
Tru1I TTAA 9 cut(s) 182, 194, 327, 368, 533, 548, 744, 849, 948
Tru9I TTAA 9 cut(s) 182, 194, 327, 368, 533, 548, 744, 849, 948
TscAI CASTG 1 cut(s) 95
TseI GCWGC 3 cut(s) 224, 430, 919
TspDTI ATGAA 6 cut(s) 17, 189, 288, 1148, 1213, 1232
TspRI CASTG 1 cut(s) 95
Vha464I CTTAAG 1 cut(s) 367
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 6 cut(s) 60, 196, 408, 544, 789, 1119
XbaI TCTAGA 2 cut(s) 14, 1054
XmaJI CCTAGG 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 6 cut(s) 15, 42, 717, 924, 1055, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.