Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Reverse (-)

22127742 .. 22129059

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29012.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAAGATTGTTCCCCTTTGCTTGATCGAATTGAGACTCGTATAAAAAGTTGGGAGAATAAGGTGCTCTCCTTTGCTGGCAGACTGCAGCTCATTCAATCTGTTTTATCTAGCATCCAAGTGTATTGGGCTTCTCATTTGATCCTTCCTAAAAAAGTTCTCAAGGATATCGAAAAAAGACTTCGTTGTTTCTTATGGGCAGGTAATTGCTCGGGTAGGGCTGCTACTAAAGTTGCTTGGTCTGAAATTTGTCTCCCTAAATGTGAAGGAGGGCTTGGCATTAAAGACTTGCATTGCTGGAATAAAGCTTTAATGATCAGCCACATTTGGAACCTTGTCTCTAGTTCCTCCAACTTTTGGACTGATTGGGTAAAGGTTTATTTACTAAAAGGTAATTCGTTCTGGAATGCTCCTCTTCCTTCTATTTGCTCTTGGAATTGGAGAAAATTGCTTAAAATTAGGGAGCTTTGTTGTTCTTTCTTTGTCAATATCATTGGTGACGGTCGTGCTACTTCATTATGGTTTGATAATTGGCATCCTCTTGGCCCTCTTACTCTTAGATGGTCTTCTAATATTATTGGTGAATCTGGTCTCTCTAAGTCTGCCATGCTTACTCCTAATGGGTTTTATTCAACTTCTTCTGCTTGGAATACTCTTCGTCCTTCTAGGTTTATTGTTCCTTGGTATCGCCTAGTTTGGTTTGTTGCTGAGACTCACAACCATCTGTTCTTTGATTGTGCTTATTCTTTTGGTATATGGACTCATGTGTTGTCCAAGTGTGATGTGAGTAAGCCTCTCCTCCCTTGGTCTGATTTCATCTTTTGGGTGGCTACAAACTGGAAAGGTAATAGTTTACCTGTTGTGATCTTAAAGTTAGCTTTACAAGCTGTGGTTTATGCAATTTGGCGCGAGAGAAATAACCGCAGGTTTCGTAATGAGAGCCTTCCTCCCGCTGTTGTGTTCAAAGGAATTGTGGAGTCCATTCGCCTCTGCTTATTGTCTTGGAAGATCCCTCATACTCCTTCTAACGCTTACATTTTTCATGAATGGAGACTAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

355

Amino Acids

40.97

Weight (kDa)

9.62

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	191, 915
AccB7I	CCANNNNNTGG	1 cut(s)	357
AccII	CGCG	1 cut(s)	909
AciI	CCGC	2 cut(s)	922, 951
AclWI	GGATC	2 cut(s)	136, 1003
AcsI	RAATTY	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	98, 633, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	6 cut(s)	91, 308, 466, 878, 887, 1058
AluI	AGCT	6 cut(s)	91, 308, 466, 878, 887, 1058
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	6 cut(s)	29, 257, 343, 596, 704, 1045
AlwI	GGATC	2 cut(s)	136, 1003
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	88, 221
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	509, 593
AvaI	CYCGRG	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	100, 208
BccI	CCATC	2 cut(s)	555, 729
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	6 cut(s)	29, 257, 343, 596, 704, 1045
BfaI	CTAG	5 cut(s)	111, 342, 666, 692, 1055
BfmI	CTRYAG	1 cut(s)	86
BfuAI	ACCTGC	2 cut(s)	191, 915
BisI	GCNGC	2 cut(s)	89, 222
BlsI	GCNGC	2 cut(s)	90, 223
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	332
BmsI	GCATC	2 cut(s)	123, 544
BpiI	GAAGAC	1 cut(s)	558
BplI	GAGNNNNNCTC	4 cut(s)	778, 810, 931, 963
BpuEI	CTTGAG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	680, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	842
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	680, 803
BseGI	GGATG	2 cut(s)	114, 535
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	842
BseRI	GAGGAG	2 cut(s)	402, 788
BseXI	GCAGC	2 cut(s)	100, 208
Bsh1236I	CGCG	1 cut(s)	909
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	6 cut(s)	29, 257, 343, 596, 704, 1045
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	546
Bso31I	GGTCTC	1 cut(s)	596
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	5 cut(s)	25, 141, 315, 864, 1008
BspACI	CCGC	2 cut(s)	922, 951
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	909
BspHI	TCATGA	1 cut(s)	1042
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	90
BspMI	ACCTGC	2 cut(s)	191, 915
BspPI	GGATC	2 cut(s)	136, 1003
BspTNI	GGTCTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	842
BssECI	CCNNGG	2 cut(s)	680, 803
BssMI	GATC	5 cut(s)	25, 141, 315, 864, 1008
BssT1I	CCWWGG	2 cut(s)	680, 803
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	420, 660
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	4 cut(s)	557, 597, 708, 1062
BstF5I	GGATG	2 cut(s)	114, 535
BstFNI	CGCG	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	5 cut(s)	28, 144, 318, 867, 1011
BstMAI	GTCTC	6 cut(s)	29, 257, 343, 596, 704, 1045
BstMBI	GATC	5 cut(s)	25, 141, 315, 864, 1008
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	2 cut(s)	100, 208
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	1 cut(s)	1008
BstYI	RGATCY	1 cut(s)	1008
BsuRI	GGCC	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	114, 535
BveI	ACCTGC	2 cut(s)	191, 915
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	1042
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	545
CviAII	CATG	3 cut(s)	607, 764, 1043
DdeI	CTNAG	4 cut(s)	557, 597, 708, 1062
DpnI	GATC	5 cut(s)	27, 143, 317, 866, 1010
DpnII	GATC	5 cut(s)	25, 141, 315, 864, 1008
Eam1104I	CTCTTC	2 cut(s)	420, 660
EarI	CTCTTC	2 cut(s)	420, 660
Eco130I	CCWWGG	2 cut(s)	680, 803
Eco31I	GGTCTC	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	680, 803
ErhI	CCWWGG	2 cut(s)	680, 803
FaeI	CATG	3 cut(s)	610, 767, 1046
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	3 cut(s)	606, 763, 1042
FauI	CCCGC	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	89, 222
FokI	GGATG	2 cut(s)	101, 522
Fsp4HI	GCNGC	2 cut(s)	89, 222
FspBI	CTAG	5 cut(s)	111, 342, 666, 692, 1055
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	2 cut(s)	89, 222
HaeIII	GGCC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	3 cut(s)	610, 767, 1046
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	5 cut(s)	37, 584, 712, 760, 977
HphI	GGTGA	2 cut(s)	509, 593
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	2 cut(s)	244, 811
Hpy188III	TCNNGA	2 cut(s)	403, 1043
Hpy8I	GTNNAC	1 cut(s)	854
HpyAV	CCTTC	6 cut(s)	155, 260, 429, 672, 953, 1032
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	4 cut(s)	4, 88, 292, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	4 cut(s)	557, 597, 708, 1062
Hsp92II	CATG	3 cut(s)	610, 767, 1046
HspAI	GCGC	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	5 cut(s)	25, 141, 315, 864, 1008
LmnI	GCTCC	2 cut(s)	415, 463
LpnPI	CCDG	8 cut(s)	63, 186, 283, 388, 573, 823, 870, 910
Lsp1109I	GCAGC	2 cut(s)	100, 208
LweI	GCATC	2 cut(s)	123, 544
MaeI	CTAG	5 cut(s)	111, 342, 666, 692, 1055
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	5 cut(s)	27, 143, 317, 866, 1010
MboI	GATC	5 cut(s)	25, 141, 315, 864, 1008
MboII	GAAGA	5 cut(s)	407, 558, 630, 647, 1018
MflI	RGATCY	1 cut(s)	1008
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	4 cut(s)	31, 706, 754, 986
MmeI	TCCRAC	1 cut(s)	375
MseI	TTAA	4 cut(s)	282, 311, 453, 869
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	953
Mva1269I	GAATGC	1 cut(s)	412
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	1 cut(s)	884
NdeII	GATC	5 cut(s)	25, 141, 315, 864, 1008
NlaIII	CATG	3 cut(s)	610, 767, 1046
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	497
PagI	TCATGA	1 cut(s)	1042
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	90, 223
PleI	GAGTC	4 cut(s)	31, 706, 754, 985
PpsI	GAGTC	4 cut(s)	31, 706, 754, 985
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	1008
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	282, 311, 453, 869
SatI	GCNGC	2 cut(s)	89, 222
Sau3AI	GATC	5 cut(s)	25, 141, 315, 864, 1008
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	4 cut(s)	31, 706, 754, 986
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	123, 544
SfcI	CTRYAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SsiI	CCGC	2 cut(s)	922, 951
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	5 cut(s)	111, 342, 666, 692, 1055
StyI	CCWWGG	2 cut(s)	680, 803
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	28, 171
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	4 cut(s)	282, 311, 453, 869
Tru9I	TTAA	4 cut(s)	282, 311, 453, 869
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	88, 221
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	504, 805, 1031, 1059
Van91I	CCANNNNNTGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	5 cut(s)	111, 342, 666, 692, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.