Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Forward (+)

15111769 .. 15112432

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAGAATTTGGATTTTTTGGAACTCCACCAAAATTTCTCTTGACAAATTGGATGCTTCTAGTCAAGTTGTTCACTGCAAGCTTAGACTTTGAGACCTTCAGGTCAATGTCTTTGCCTCTTTCATCTATGGTTCGAATGATGACTCAACGAGGAGAGAGCTTTGGCATAGCATGGAAAACTTTGCAGGATGATGGGAATTTTATTTCCAGAAAGTTGGACCGTGCCATGGTTAATCAGTATTGGATGAACTCTTTTCCCAATTGTAGTACTGTGTTCTTGCCCCCTGGGAAGATTTCCTTCCAATTGTCTTCGGTGTGTGGGCTACCAATGTTCGGGGATCTAAACAATTCCAAGTCTGTTGGAAGCTTAAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

8.71

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	379
AasI	GACNNNNNNGTC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	3 cut(s)	8, 35, 199
AcuI	CTGAAG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	229, 335
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	84, 162, 369
AluI	AGCT	3 cut(s)	84, 162, 369
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	348
ApoI	RAATTY	3 cut(s)	8, 35, 199
AspS9I	GGNCC	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	303
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	62
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	228, 286, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 335
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	228, 286, 287
BseGI	GGATG	3 cut(s)	60, 196, 252
BseLI	CCNNNNNNNGG	2 cut(s)	229, 335
BseRI	GAGGAG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	229, 335
BsmAI	GTCTC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	340
Bsp19I	CCATGG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	228, 286, 287
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	224, 274
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	60, 196, 252
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	340
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	60, 196, 252
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	2 cut(s)	174, 229
CviJI	RGCY	4 cut(s)	84, 162, 325, 369
CviKI_1	RGCY	4 cut(s)	84, 162, 325, 369
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	177, 232
FaiI	YATR	5 cut(s)	131, 170, 175, 230, 379
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	2 cut(s)	173, 228
FokI	GGATG	3 cut(s)	67, 203, 259
FspBI	CTAG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	177, 232
HindIII	AAGCTT	2 cut(s)	82, 367
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	43, 210
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	109, 310
HpyCH4III	ACNGT	2 cut(s)	224, 274
HpyCH4V	TGCA	2 cut(s)	80, 187
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	177, 232
Kzo9I	GATC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	88, 173, 223, 273, 300
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	62
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	17, 303, 304
MfeI	CAATTG	2 cut(s)	262, 305
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	7 cut(s)	8, 35, 49, 199, 262, 305, 349
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	198, 343
MnlI	CCTC	2 cut(s)	129, 146
MseI	TTAA	2 cut(s)	234, 371
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	2 cut(s)	262, 305
MvaI	CCWGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	177, 232
NspV	TTCGAA	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	287
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	234, 371
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	5 cut(s)	86, 101, 107, 164, 371
SfaNI	GCATC	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	7 cut(s)	8, 35, 49, 199, 262, 305, 349
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	224, 274
TaqI	TCGA	1 cut(s)	136
TasI	AATT	7 cut(s)	8, 35, 49, 199, 262, 305, 349
TatI	WGTACW	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	234, 371
Tru9I	TTAA	2 cut(s)	234, 371
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	114, 263
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	3 cut(s)	8, 35, 199
XspI	CTAG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.