Rh3BG325600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006991
Physical Location & Seq
Reverse (-)
33844512 .. 33845174
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG325600.1

Sequence Viewer

Length: 663 bp
ATGTTCTGTAATGGTGATGAAAATTTTGTTCTTACTCTCCATGATGCGCTCTCTGATTTTGAATCGTTATCTGGCCTTACTGCAAGTGTTTCTAAGAGTAAAATCTTTCTTTCTGGTGTGGATGTGAACTCAATTGAATCTATTCTTCGAATTATGAACTTTCATGTGGGGACTTGCCCTGTTCGTTACTTGGGTATTCCTCTAATTACTACCAAATTGAGAATGCAGGACTACTCTCCCTTGATTGATCAAATAGAGGCTCGTATCAAAAGTTGGGAGAATAAGGTGCTCTCTTTCGCTGGAAGATTGCAACTTATTCAATCTGTTTTATCTAGCATCCAAGTGTACTGGGCGTCTCATTTAATTCTTCCTAAAAAAGTTCTCGAGGATATCGAAAAAAGGCTTCGTTGTTTTTTATGGGCTGGTAATTGCTCAGGTAAGGCTGCTGCTAAAGTTGCTTGGTCTGATATTTGCCTCCCTAAATCTGAAGGAGGGCTTGGCATTAAAGATTTACATTGTTGGAACAAAGCTTTGATGATTCGCCACATTTGGAACCTTGTTTCAGGTTCCTCCAACTTATGGACCAATTGGGTGAAAGTTTATTTACTAAGGAATAATTCTTTCTGGAATACTCCTCATCGTGCCGTGTGTTCTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

220

Amino Acids

24.94

Weight (kDa)

9.11

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 579
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 507
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 579
AgsI TTSAA 3 cut(s) 62, 137, 320
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 1 cut(s) 530
AluI AGCT 1 cut(s) 530
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 443, 446
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 582
AsuHPI GGTGA 2 cut(s) 26, 604
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 430, 433
BceAI ACGGC 1 cut(s) 629
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 1 cut(s) 333
BisI GCNGC 2 cut(s) 444, 447
BlsI GCNGC 2 cut(s) 445, 448
Bme18I GGWCC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 582
BmiI GGNNCC 2 cut(s) 554, 568
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 34, 345
BmuI ACTGGG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse1I ACTGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 127, 336
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 624
BseXI GCAGC 2 cut(s) 430, 433
BshFI GGCC 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 1 cut(s) 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 247
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 554, 568
BspT104I TTCGAA 1 cut(s) 148
BsrI ACTGG 1 cut(s) 353
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 93, 433, 608
BstF5I GGATG 2 cut(s) 127, 336
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 430, 433
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 127, 336
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 582
CseI GACGC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 41, 164
CviJI RGCY 7 cut(s) 75, 260, 403, 422, 443, 496, 530
CviKI_1 RGCY 7 cut(s) 75, 260, 403, 422, 443, 496, 530
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 3 cut(s) 93, 433, 608
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 582
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 2 cut(s) 44, 167
FaiI YATR 5 cut(s) 42, 155, 165, 418, 580
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 40, 163
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 444, 447
FokI GGATG 2 cut(s) 134, 323
Fsp4HI GCNGC 2 cut(s) 444, 447
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 444, 447
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 2 cut(s) 44, 167
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 3 cut(s) 62, 137, 538
HphI GGTGA 2 cut(s) 26, 604
Hpy166II GTNNAC 2 cut(s) 127, 346
Hpy188I TCNGA 3 cut(s) 55, 466, 487
Hpy188III TCNNGA 2 cut(s) 383, 625
Hpy8I GTNNAC 2 cut(s) 127, 346
HpyAV CCTTC 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 83, 226, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 93, 433, 608
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 2 cut(s) 44, 167
HspAI GCGC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 430, 433
LweI GCATC 2 cut(s) 34, 345
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 3 cut(s) 137, 315, 359
MfeI CAATTG 2 cut(s) 132, 586
MhlI GDGCHC 1 cut(s) 291
MmeI TCCRAC 2 cut(s) 500, 597
MnlI CCTC 7 cut(s) 210, 250, 379, 485, 485, 580, 645
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 362, 504
MslI CAYNNNNRTG 1 cut(s) 341
MunI CAATTG 2 cut(s) 132, 586
Mva1269I GAATGC 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 44, 167
NlaIV GGNNCC 2 cut(s) 554, 568
NspV TTCGAA 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 62, 137, 538
PflMI CCANNNNNTGG 1 cut(s) 579
PkrI GCNGC 2 cut(s) 445, 448
PspN4I GGNNCC 2 cut(s) 554, 568
PspPI GGNCC 1 cut(s) 582
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 362, 504
SatI GCNGC 2 cut(s) 444, 447
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 582
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 288, 439, 532, 558, 568
SfaNI GCATC 2 cut(s) 34, 345
Sfr274I CTCGAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 582
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SspMI CTAG 1 cut(s) 333
TaqI TCGA 3 cut(s) 148, 384, 393
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 3 cut(s) 62, 137, 538
Tru1I TTAA 2 cut(s) 362, 504
Tru9I TTAA 2 cut(s) 362, 504
TseI GCWGC 2 cut(s) 443, 446
TspDTI ATGAA 3 cut(s) 33, 152, 170
Van91I CCANNNNNTGG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 582
XapI RAATTY 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.