AT1G43730

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012717
Physical Location & Seq
Reverse (-)
16508723 .. 16509784
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43730.1

Sequence Viewer

Length: 963 bp
ATGTTTATCCCTGATGTGGTGCAAGGGAATCAGGTGGGTTTCATTAAGGGTCGCCTCTTATGTGAAAACGTCCTTTTGGCTTCGGAGCTAGTCGAAAATTTTCTTGGTCAGAGGAATTTTTGGACTCTTAACTCTACAACTTCAGACAGCTGGATTTGGAGGAGGTTGTGTAAGCTCAGAGAAGTGGCTAGGCCTTTTGTTGTTTGTGATGTTGGGTCTGGGGTCACTGCGAAGTTTTGGCATGACAATTGGACTGGACACGGTCCTCTTATTGATTTAGTTGGTCCGTTAGGGCCGCAAACGGTGGGTCTGCCTATTGATGCTGTGGGATTGATTGATTGTCAGCATGACGACTCATTTATCTGGAAAACGGACCTTCATGCTCCTTCGAACATTTTCTCTACAGCGAAGACTTCGCTTGCTCTCCACCCGCAGAATCACATTGTCCCTTGGTATAAGGCGGTCTGGTTTAAGAATCATGTTCCAAAACATGCTTTCATTTGTTGGGTCGTGGCTTGGAATAGACTGCACACTCGGGATCGATTACGGAGCTGGGGGCTCTCGATTCCTGCAGTTTGTCTCCTTTGTAACTCTCATGATGAGTCCAGAGCTCATCTCTTCTTTGAGTGTCCTTTCTGTGGAGCCGTGTGGCGGTTCTTCACGGGTAGGGCTAATCTATTTCCTCCTGCGCAGCTCATGTATTGTCTAATCTGGCTTCTCAATCCCTCGAGGGATAAGAACACTACTCTCATTATCAGGCTAGCTTTTCAGGCTTATGTTTATGCTATTTGGCGTGAAAGGAATCTGTGTCTTCACACCGGAGTCGCTCGCGTCTTTGATTCGGTCCTGAAGGACATCCAGCTTACTATTCGTGCTCGATTGGATCCTATCTCTCGCATTACAGAACTTCATCCTTCTGCGCCTTCTGTTCTGAGGACTTGGTTCTCTCTATTCCAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

320

Amino Acids

36.71

Weight (kDa)

9.02

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 133 - 217 4.5e-23 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 727
Acc16I TGCGCA 1 cut(s) 690
AccII CGCG 1 cut(s) 831
AciI CCGC 4 cut(s) 296, 431, 461, 652
AclWI GGATC 3 cut(s) 546, 878, 891
AcsI RAATTY 2 cut(s) 97, 115
AcuI CTGAAG 2 cut(s) 126, 869
AfiI CCNNNNNNNGG 3 cut(s) 16, 638, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 8 cut(s) 88, 150, 175, 552, 611, 694, 764, 862
AluI AGCT 8 cut(s) 88, 150, 175, 552, 611, 694, 764, 862
Alw21I GWGCWC 2 cut(s) 613, 877
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 3 cut(s) 546, 878, 891
Ama87I CYCGRG 2 cut(s) 534, 727
AoxI GGCC 2 cut(s) 191, 293
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 2 cut(s) 97, 115
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 2 cut(s) 99, 395
AspLEI GCGC 2 cut(s) 691, 922
AspS9I GGNCC 5 cut(s) 263, 284, 293, 373, 844
AsuII TTCGAA 1 cut(s) 389
AsuNHI GCTAGC 1 cut(s) 760
AvaI CYCGRG 2 cut(s) 534, 727
AvaII GGWCC 4 cut(s) 263, 284, 373, 844
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 561, 613
BbsI GAAGAC 2 cut(s) 416, 803
Bbv12I GWGCWC 2 cut(s) 613, 877
BbvI GCAGC 1 cut(s) 703
BceAI ACGGC 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 4 cut(s) 89, 189, 761, 961
BfmI CTRYAG 2 cut(s) 402, 570
BisI GCNGC 2 cut(s) 296, 692
BlsI GCNGC 2 cut(s) 297, 693
Bme18I GGWCC 4 cut(s) 263, 284, 373, 844
BmeT110I CYCGRG 2 cut(s) 534, 727
BmgT120I GGNCC 5 cut(s) 263, 284, 293, 373, 844
BmiI GGNNCC 2 cut(s) 643, 885
BmsI GCATC 1 cut(s) 310
BmtI GCTAGC 1 cut(s) 764
BpiI GAAGAC 2 cut(s) 416, 803
BplI GAGNNNNNCTC 2 cut(s) 600, 632
Bpu14I TTCGAA 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 449
BsaWI WCCGGW 1 cut(s) 818
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 638, 651
Bse1I ACTGG 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 2 cut(s) 855, 910
BseLI CCNNNNNNNGG 3 cut(s) 16, 638, 651
BseMII CTCAG 2 cut(s) 190, 923
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 703
BseYI CCCAGC 1 cut(s) 552
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 2 cut(s) 193, 295
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 613, 877
BsiHKCI CYCGRG 2 cut(s) 534, 727
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 3 cut(s) 16, 638, 651
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 2 cut(s) 193, 295
BsoBI CYCGRG 2 cut(s) 534, 727
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 3 cut(s) 561, 613, 877
Bsp143I GATC 2 cut(s) 538, 883
BspACI CCGC 4 cut(s) 296, 431, 461, 652
BspANI GGCC 2 cut(s) 193, 295
BspCNI CTCAG 2 cut(s) 189, 924
BspDI ATCGAT 1 cut(s) 541
BspFNI CGCG 1 cut(s) 831
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 643, 885
BspMAI CTGCAG 1 cut(s) 574
BspOI GCTAGC 1 cut(s) 764
BspPI GGATC 3 cut(s) 546, 878, 891
BspT104I TTCGAA 1 cut(s) 389
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 2 cut(s) 538, 883
BssT1I CCWWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 263, 304
Bst6I CTCTTC 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 420, 762, 829
BstDEI CTNAG 2 cut(s) 176, 932
BstF5I GGATG 2 cut(s) 855, 910
BstFNI CGCG 1 cut(s) 831
BstHHI GCGC 2 cut(s) 691, 922
BstKTI GATC 2 cut(s) 541, 886
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 2 cut(s) 538, 883
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNSI RCATGY 1 cut(s) 494
BstSFI CTRYAG 2 cut(s) 402, 570
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 1 cut(s) 703
BstV2I GAAGAC 2 cut(s) 416, 803
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
Bsu15I ATCGAT 1 cut(s) 541
BsuRI GGCC 2 cut(s) 193, 295
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 2 cut(s) 855, 910
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 420, 762, 829
CciI TCATGA 1 cut(s) 595
CfoI GCGC 2 cut(s) 691, 922
Cfr13I GGNCC 5 cut(s) 263, 284, 293, 373, 844
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 1 cut(s) 820
CviAII CATG 7 cut(s) 242, 347, 380, 479, 491, 596, 697
DdeI CTNAG 2 cut(s) 176, 932
DpnI GATC 2 cut(s) 540, 885
DpnII GATC 2 cut(s) 538, 883
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Ecl136II GAGCTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 449
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 2 cut(s) 561, 613
Eco47I GGWCC 4 cut(s) 263, 284, 373, 844
Eco53kI GAGCTC 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 126, 869
Eco88I CYCGRG 2 cut(s) 534, 727
EcoICRI GAGCTC 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 449
EcoT38I GRGCYC 2 cut(s) 561, 613
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 7 cut(s) 245, 350, 383, 482, 494, 599, 700
FaqI GGGAC 1 cut(s) 431
FatI CATG 7 cut(s) 241, 346, 379, 478, 490, 595, 696
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 296, 692
FokI GGATG 2 cut(s) 842, 897
FriOI GRGCYC 2 cut(s) 561, 613
Fsp4HI GCNGC 2 cut(s) 296, 692
FspBI CTAG 4 cut(s) 89, 189, 761, 961
FspI TGCGCA 1 cut(s) 690
GlaI GCGC 2 cut(s) 690, 921
GluI GCNGC 2 cut(s) 296, 692
GsaI CCCAGC 1 cut(s) 556
HaeIII GGCC 2 cut(s) 193, 295
HapII CCGG 1 cut(s) 819
HgaI GACGC 1 cut(s) 820
HhaI GCGC 2 cut(s) 691, 922
Hin1II CATG 7 cut(s) 245, 350, 383, 482, 494, 599, 700
Hin6I GCGC 2 cut(s) 689, 920
HinP1I GCGC 2 cut(s) 689, 920
HpaII CCGG 1 cut(s) 819
Hpy188I TCNGA 5 cut(s) 85, 111, 145, 179, 933
Hpy188III TCNNGA 6 cut(s) 364, 536, 562, 596, 606, 847
HpyAV CCTTC 5 cut(s) 386, 396, 844, 924, 933
HpyCH4III ACNGT 2 cut(s) 263, 304
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 22, 529, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 2 cut(s) 176, 932
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 7 cut(s) 245, 350, 383, 482, 494, 599, 700
HspAI GCGC 2 cut(s) 689, 920
Kzo9I GATC 2 cut(s) 538, 883
LmnI GCTCC 4 cut(s) 85, 388, 549, 641
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 1 cut(s) 310
MaeI CTAG 4 cut(s) 89, 189, 761, 961
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 223, 587
MalI GATC 2 cut(s) 540, 885
MboI GATC 2 cut(s) 538, 883
MboII GAAGA 4 cut(s) 421, 610, 649, 803
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 3 cut(s) 561, 613, 877
MluCI AATT 3 cut(s) 97, 115, 247
MlyI GAGTC 4 cut(s) 118, 347, 611, 831
MnlI CCTC 9 cut(s) 65, 105, 153, 156, 276, 693, 723, 736, 927
MroXI GAANNNNTTC 2 cut(s) 99, 395
MseI TTAA 3 cut(s) 45, 129, 471
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 1 cut(s) 819
MunI CAATTG 1 cut(s) 247
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 1 cut(s) 770
NdeII GATC 2 cut(s) 538, 883
NheI GCTAGC 1 cut(s) 760
NlaIII CATG 7 cut(s) 245, 350, 383, 482, 494, 599, 700
NlaIV GGNNCC 2 cut(s) 643, 885
NmuCI GTSAC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 690
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 727
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 99, 395
PfeI GAWTC 6 cut(s) 28, 436, 475, 565, 802, 839
PflFI GACNNNGTC 1 cut(s) 261
PkrI GCNGC 2 cut(s) 297, 693
PleI GAGTC 4 cut(s) 118, 347, 610, 830
PpsI GAGTC 4 cut(s) 118, 347, 610, 830
Psp124BI GAGCTC 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 643, 885
PspPI GGNCC 5 cut(s) 263, 284, 293, 373, 844
PspXI VCTCGAGB 1 cut(s) 727
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 883
PsyI GACNNNGTC 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 613
SaqAI TTAA 3 cut(s) 45, 129, 471
SatI GCNGC 2 cut(s) 296, 692
Sau3AI GATC 2 cut(s) 538, 883
Sau96I GGNCC 5 cut(s) 263, 284, 293, 373, 844
SchI GAGTC 4 cut(s) 118, 347, 611, 831
SduI GDGCHC 3 cut(s) 561, 613, 877
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 402, 570
Sfr274I CTCGAG 1 cut(s) 727
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 4 cut(s) 263, 284, 373, 844
SlaI CTCGAG 1 cut(s) 727
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
Sse9I AATT 3 cut(s) 97, 115, 247
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 4 cut(s) 296, 431, 461, 652
SspMI CTAG 4 cut(s) 89, 189, 761, 961
SstI GAGCTC 1 cut(s) 613
StuI AGGCCT 1 cut(s) 193
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 263, 304
TaiI ACGT 1 cut(s) 72
TaqI TCGA 6 cut(s) 93, 389, 541, 563, 728, 877
TaqII GACCGA 1 cut(s) 832
TasI AATT 3 cut(s) 97, 115, 247
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 6 cut(s) 28, 436, 475, 565, 802, 839
Tru1I TTAA 3 cut(s) 45, 129, 471
Tru9I TTAA 3 cut(s) 45, 129, 471
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 31, 368, 487, 899
TspGWI ACGGA 3 cut(s) 276, 386, 562
TspRI CASTG 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 261
VpaK11BI GGWCC 4 cut(s) 263, 284, 373, 844
XapI RAATTY 2 cut(s) 97, 115
XceI RCATGY 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 727
XmnI GAANNNNTTC 2 cut(s) 99, 395
XspI CTAG 4 cut(s) 89, 189, 761, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.