Rh7CG451500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012717
Physical Location & Seq
Reverse (-)
59362748 .. 59363077
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG451500.1

Sequence Viewer

Length: 330 bp
ATGGGCGTTCTTCATCTTATTGTTGGGCCTTCCCAATCTGCCTTCATTCCTGGGCGCAGAATTGGAGACAATATCCTTCTTGCTCAAGAACTCCTTCGTGATTACCATAAAGCTACTGGTCATCCTAGATGTGCTCTTATGGTGGACATTATGAAAGCTTATGACACTGTCGAGTGGGATTTCATTCTTGCGACCCTTGAAGCTTTTAAAATTCCTTCCACTTTGATTAGCTGGATCAAGAGCTGCATTTCTTCCCCGAGATTTTCAGTGGCTGTTAATGGTGAATTGGTAGGTTTCTTTGCTAGCAAGAATCAATATTTTTTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos RVT_1 zf-RVT

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

7.82

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 8 - 100 2.7e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 210
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 5 cut(s) 113, 158, 203, 231, 243
AluI AGCT 5 cut(s) 113, 158, 203, 231, 243
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 293
AsuNHI GCTAGC 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 2 cut(s) 126, 303
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 51
BmtI GCTAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 60
BsnI GGCC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 234
BspANI GGCC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 304
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 165, 273
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 26
CviJI RGCY 7 cut(s) 28, 113, 158, 203, 231, 243, 272
CviKI_1 RGCY 7 cut(s) 28, 113, 158, 203, 231, 243, 272
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraI TTTAAA 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 49
FaiI YATR 4 cut(s) 108, 140, 152, 162
FalI AAGNNNNNCTT 2 cut(s) 78, 110
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 2 cut(s) 126, 303
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 28
HhaI GCGC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HindIII AAGCTT 2 cut(s) 156, 201
HinfI GANTC 1 cut(s) 310
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 86, 98, 238
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 5 cut(s) 39, 52, 86, 104, 225
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 246
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 36, 63, 102, 217
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 2 cut(s) 126, 303
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 3 cut(s) 60, 210, 284
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 207, 276
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NdeII GATC 1 cut(s) 234
NheI GCTAGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 207, 276
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 136
SetI ASST 6 cut(s) 115, 160, 205, 233, 245, 295
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 60, 210, 284
SspI AATATT 1 cut(s) 317
SspMI CTAG 2 cut(s) 126, 303
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 60, 210, 284
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 207, 276
Tru9I TTAA 2 cut(s) 207, 276
TscAI CASTG 2 cut(s) 172, 273
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 34, 167, 172
TspRI CASTG 2 cut(s) 172, 273
Tth111I GACNNNGTC 1 cut(s) 167
XapI RAATTY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 126, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.