AT5G11565

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012717
Physical Location & Seq
Reverse (-)
3714655 .. 3714912
258 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11565.1

Sequence Viewer

Length: 258 bp
ATGAAGTTAACTTGGAACTACTTCAGGTCCCGTGAAGAGGAAAAACCTTGGGTTCCTACGGTTTGGTTTAAGAATGCTGTTCCAAAACATGCTTTCACCTTTTGGATTGCTAATCTTGATAGGCTTCCTGTTAAATCAAGGCTCCATGATTGGGGAATGCAAATCTCTCCTCTTTGTGGAGTTTGTAACACTGATGTGGAATCCAGAGATCCCTCCTTCTTCACTGCAACTTTGCAGAGGAGATTTGGTATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 zf-RVT

Protein Analysis

85

Amino Acids

10.12

Weight (kDa)

9.51

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 2 - 80 6.9e-19 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 7
AfiI CCNNNNNNNGG 3 cut(s) 37, 151, 176
AleI CACNNNNGTG 1 cut(s) 194
AlwI GGATC 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 3 cut(s) 29, 54, 143
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 151, 176
BseDI CCNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 3 cut(s) 37, 151, 176
BseRI GAGGAG 2 cut(s) 159, 253
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 3 cut(s) 37, 151, 176
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 2 cut(s) 79, 162
Bsp143I GATC 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 29, 54, 143
BspPI GGATC 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 30
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 189, 222
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 2 cut(s) 89, 146
CviJI RGCY 2 cut(s) 124, 142
CviKI_1 RGCY 2 cut(s) 124, 142
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 92, 149
FaiI YATR 3 cut(s) 90, 147, 256
FaqI GGGAC 1 cut(s) 13
FatI CATG 2 cut(s) 88, 145
Hin1II CATG 2 cut(s) 92, 149
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 200
HpaI GTTAAC 1 cut(s) 9
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 116, 204
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 160, 227, 235
Hsp92II CATG 2 cut(s) 92, 149
KspAI GTTAAC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 10, 141, 217
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 47, 211
MflI RGATCY 1 cut(s) 208
MnlI CCTC 4 cut(s) 31, 180, 223, 231
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 3 cut(s) 8, 69, 132
MslI CAYNNNNRTG 1 cut(s) 194
Mva1269I GAATGC 2 cut(s) 79, 162
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 92, 149
NlaIV GGNNCC 3 cut(s) 29, 54, 143
NspI RCATGY 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 194
PctI GAATGC 2 cut(s) 79, 162
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 29, 54, 143
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
PsuI RGATCY 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 8, 69, 132
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 27
SetI ASST 3 cut(s) 29, 49, 101
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 61
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 3 cut(s) 8, 69, 132
Tru9I TTAA 3 cut(s) 8, 69, 132
TscAI CASTG 2 cut(s) 196, 229
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 196, 229
VpaK11BI GGWCC 1 cut(s) 27
XceI RCATGY 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.