AT2G11035

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012717
Physical Location & Seq
Forward (+)
4416920 .. 4419072
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G11035.1

Sequence Viewer

Length: 882 bp
ATGTCATCAGCGAATGATACTCCGGTTTGGGCAATTGATGGTAGGCCTTACTTCTCTTTCTCTTCTAAATCTGTATGGAATGCTATTAGGATTTCAAATCAAGTTCAATCTTGGGTTCCTCTTGTATGGCACAAAGCAGTCATTCCACGTCATGCTATCACATCCTGGCTTTTTATACTCAATCGTAACCCTACTCTAGATCGTTTATCTACATGGGGTTTTGATATTGAGTTGGACTGTCTTTTGTGTGGCTTTACTGATCGATGCTTGTTAGATTTGTACTGCCTACACAAGAACTCTGTTGATTTGCCCTTGGATGTCCCGGAGGATAGCCATGAACTTTGTAACACTTGTCAACAGTGTGACCAATACGATTGCAATCTGACAGCTGAACCTTCATCATCCGTCATTGCACTTCGAGTCTTCATTTTTCCACCTTTCTTCACCATTTTTCTTCAAACTGAGCTCGCGGAAGAACAATCAATGATCAGAGAAGGAAGAATCGGTGAAGATGGAACAGAAACTGTAGAAACGAAGACATCACCCCCTCCGCTCCTCTGGGATCAAATCCTTCTTTGGCTACCTAAAGCTTCAACATCTAAACATCGTAATCTAGCTCTCCTTCAAGGTTGGCAAGGTGCAATCTATGCATTGTGGAAGGAACGAAATCGCCGATTCCATGATGGTCTCTCCCTCTCTTCGGGTACAATCGCAATGGACGTCATGTCCACCATGATTAACAAGTGTAAAGTAATGATTCAGCTGGACTTAAAGCGTGGAATTTCACTTCTCCAATGTTGGACTCACTATGGTTTAAATCAAGATTATGGCTCTGTTTTTCTTTATGCAGGTTTCTCTGTTTTTGATTCTTACTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

293

Amino Acids

33.5

Weight (kDa)

5.48

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 20 - 84 1.6e-14 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 723
Acc36I ACCTGC 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 553
AccII CGCG 1 cut(s) 470
AciI CCGC 2 cut(s) 470, 551
AclWI GGATC 1 cut(s) 570
AcsI RAATTY 1 cut(s) 780
AcyI GRCGYC 1 cut(s) 720
AfaI GTAC 2 cut(s) 281, 706
AfiI CCNNNNNNNGG 1 cut(s) 700
AgsI TTSAA 5 cut(s) 96, 107, 458, 594, 626
AhdI GACNNNNNGTC 1 cut(s) 724
AjiI CACGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 5 cut(s) 389, 466, 590, 617, 763
AluI AGCT 5 cut(s) 389, 466, 590, 617, 763
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 1 cut(s) 570
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 780
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 436, 518, 534
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BanII GRGCYC 1 cut(s) 468
BbsI GAAGAC 2 cut(s) 415, 542
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 3 cut(s) 32, 506, 677
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 3 cut(s) 197, 614, 880
BfmI CTRYAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 839
Bme1390I CCNGG 2 cut(s) 166, 323
BmeRI GACNNNNNGTC 1 cut(s) 724
BmgBI CACGTC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 166, 323
BmsI GCATC 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 415, 542
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse3DI GCAATG 2 cut(s) 408, 720
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 3 cut(s) 161, 322, 401
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMI GCAATG 2 cut(s) 408, 720
BseMII CTCAG 1 cut(s) 453
BseRI GAGGAG 1 cut(s) 545
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 23, 323
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 4 cut(s) 199, 259, 486, 562
BspACI CCGC 2 cut(s) 470, 551
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 454
BspDI ATCGAT 1 cut(s) 262
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 839
BspPI GGATC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 692
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 408, 720
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 4 cut(s) 199, 259, 486, 562
BssNI GRCGYC 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 3 cut(s) 239, 360, 526
Bst6I CTCTTC 2 cut(s) 67, 703
BstACI GRCGYC 1 cut(s) 720
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 161, 322, 401
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 4 cut(s) 202, 262, 489, 565
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 4 cut(s) 199, 259, 486, 562
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 164, 321
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 470
BstV2I GAAGAC 2 cut(s) 415, 542
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 262
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 3 cut(s) 161, 322, 401
BtsIMutI CAGTG 1 cut(s) 365
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 524
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 2 cut(s) 280, 705
CviAII CATG 6 cut(s) 152, 213, 335, 680, 724, 733
CviQI GTAC 2 cut(s) 280, 705
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 201, 261, 488, 564
DpnII GATC 4 cut(s) 199, 259, 486, 562
DraI TTTAAA 1 cut(s) 816
DriI GACNNNNNGTC 1 cut(s) 724
Eam1104I CTCTTC 2 cut(s) 67, 703
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 2 cut(s) 67, 703
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 6 cut(s) 155, 216, 338, 683, 727, 736
FaqI GGGAC 1 cut(s) 305
FatI CATG 6 cut(s) 151, 212, 334, 679, 723, 732
FbaI TGATCA 1 cut(s) 486
FokI GGATG 3 cut(s) 148, 329, 388
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 3 cut(s) 197, 614, 880
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 23, 323
Hin1I GRCGYC 1 cut(s) 720
Hin1II CATG 6 cut(s) 155, 216, 338, 683, 727, 736
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 6 cut(s) 420, 501, 675, 757, 802, 866
HpaII CCGG 2 cut(s) 23, 323
HphI GGTGA 3 cut(s) 436, 518, 534
Hpy166II GTNNAC 2 cut(s) 356, 729
Hpy188I TCNGA 2 cut(s) 384, 491
Hpy188III TCNNGA 2 cut(s) 197, 821
Hpy8I GTNNAC 2 cut(s) 356, 729
HpyAV CCTTC 5 cut(s) 405, 488, 581, 632, 652
HpyCH4III ACNGT 3 cut(s) 239, 360, 526
HpyCH4IV ACGT 2 cut(s) 148, 720
HpyCH4V TGCA 5 cut(s) 378, 413, 641, 650, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 148, 720
Hsp92I GRCGYC 1 cut(s) 720
Hsp92II CATG 6 cut(s) 155, 216, 338, 683, 727, 736
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 4 cut(s) 199, 259, 486, 562
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 7 cut(s) 36, 151, 178, 336, 544, 749, 834
LweI GCATC 1 cut(s) 254
MaeI CTAG 3 cut(s) 197, 614, 880
MaeII ACGT 2 cut(s) 148, 720
MaeIII GTNAC 3 cut(s) 185, 344, 362
MalI GATC 4 cut(s) 201, 261, 488, 564
MbiI CCGCTC 1 cut(s) 553
MboI GATC 4 cut(s) 199, 259, 486, 562
MboII GAAGA 9 cut(s) 54, 415, 433, 446, 485, 510, 521, 547, 690
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 2 cut(s) 33, 780
MlyI GAGTC 2 cut(s) 429, 796
MmeI TCCRAC 2 cut(s) 213, 779
MnlI CCTC 5 cut(s) 129, 319, 558, 566, 704
Mph1103I ATGCAT 1 cut(s) 652
MseI TTAA 3 cut(s) 738, 770, 815
MspA1I CMGCKG 2 cut(s) 389, 763
MspI CCGG 2 cut(s) 23, 323
MspR9I CCNGG 2 cut(s) 166, 323
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 647
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 199, 259, 486, 562
NlaIII CATG 6 cut(s) 155, 216, 338, 683, 727, 736
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 652
PceI AGGCCT 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 670, 717
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 501, 675, 757, 866
PfoI TCCNGGA 1 cut(s) 321
PleI GAGTC 2 cut(s) 428, 796
PpsI GAGTC 2 cut(s) 428, 796
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 524
PvuII CAGCTG 2 cut(s) 389, 763
RsaI GTAC 2 cut(s) 281, 706
RsaNI GTAC 2 cut(s) 280, 705
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 738, 770, 815
Sau3AI GATC 4 cut(s) 199, 259, 486, 562
SchI GAGTC 2 cut(s) 429, 796
ScrFI CCNGG 2 cut(s) 166, 323
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 525
Sse9I AATT 2 cut(s) 33, 780
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 2 cut(s) 470, 551
SspMI CTAG 3 cut(s) 197, 614, 880
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 2 cut(s) 164, 321
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 3 cut(s) 239, 360, 526
TaiI ACGT 2 cut(s) 151, 723
TaqI TCGA 2 cut(s) 262, 418
TasI AATT 2 cut(s) 33, 780
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 4 cut(s) 501, 675, 757, 866
Tru1I TTAA 3 cut(s) 738, 770, 815
Tru9I TTAA 3 cut(s) 738, 770, 815
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 3 cut(s) 351, 387, 415
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 1 cut(s) 365
XapI RAATTY 1 cut(s) 780
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 3 cut(s) 197, 614, 880
ZraI GACGTC 1 cut(s) 721
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.