AT2G02520

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012717
Physical Location & Seq
Reverse (-)
676771 .. 678145
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02520.1

Sequence Viewer

Length: 636 bp
ATGGAGATGCAGATGGAGATAGGAATTGGATACAATGCGGATCCCATTTTGGAAAGAAACAAGGAAATTGACCTGGAGGCCACTGCAACTTGGCTTCACTTGAACCCTATTGGAGAGAGAGTGGACTGGTTTAAGGCGATTTGGTTTAAAGGAAAAATTCCCAAGCATGCCTTCATTGCTTGGGTTAATATGAGACATAGGCTCCATACAAAGGATAGAATGATAAGCTGGGGATTTATTTTTCCGCCCCTTTGCTTATTTTGCAATACTCATGATGAGACAAGACAACATCTGTTTTTTGATTGTGAGTTTGCAAGGGAGGTTTGGATCTATTTCACTTCTCGGGTCCATGTTTTTCCTCCTCTTTTGTTTGAAGATGGAATTAGATGGCTAAAGAATCCTTGTCAGGACAAGAATGTGACGACGATTCTTAGGCTTTCCCATCATGCATCGGTGTACACGATCTGGAAGGAACGAAATGCTCGACTTCACGATTCGGCTTCAAGACCTGCAGCAGCTCTGATTTTGGAGATTAAGTCAGTTATTCGGTGTCACTTGGATCCGCTTTCAAGAGCTCAAAGATTAGGTCCTAATAGAATTTCCTTTCTCGCCACTTGGTTTGGTCTCTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

211

Amino Acids

24.95

Weight (kDa)

8.87

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 28 - 109 1.5e-23 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
AciI CCGC 3 cut(s) 38, 245, 563
AclWI GGATC 5 cut(s) 35, 48, 335, 554, 567
AcsI RAATTY 2 cut(s) 156, 597
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 103, 374, 504, 570
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 228, 518, 575
AluI AGCT 3 cut(s) 228, 518, 575
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 187, 272, 629
AlwI GGATC 5 cut(s) 35, 48, 335, 554, 567
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 512, 515
ApoI RAATTY 2 cut(s) 156, 597
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AspS9I GGNCC 2 cut(s) 346, 587
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 346, 587
BamHI GGATCC 2 cut(s) 40, 559
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 524, 527
BccI CCATC 4 cut(s) 7, 371, 381, 450
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 23
BcoDI GTCTC 3 cut(s) 187, 272, 629
BfmI CTRYAG 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 517
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 2 cut(s) 513, 516
BlsI GCNGC 2 cut(s) 514, 517
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 346, 587
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 346, 587
BmiI GGNNCC 4 cut(s) 42, 203, 347, 561
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 629
BsaXI ACNNNNNCTCC 6 cut(s) 105, 135, 186, 216, 521, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 524, 527
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 3 cut(s) 187, 272, 629
BsnI GGCC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 629
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 577
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 4 cut(s) 40, 327, 462, 559
BspACI CCGC 3 cut(s) 38, 245, 563
BspANI GGCC 1 cut(s) 80
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 4 cut(s) 42, 203, 347, 561
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 5 cut(s) 35, 48, 335, 554, 567
BspTNI GGTCTC 1 cut(s) 629
BsrDI GCAATG 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 1 cut(s) 131
BssMI GATC 4 cut(s) 40, 327, 462, 559
Bst2UI CCWGG 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 431
BstKTI GATC 4 cut(s) 43, 330, 465, 562
BstMAI GTCTC 3 cut(s) 187, 272, 629
BstMBI GATC 4 cut(s) 40, 327, 462, 559
BstMWI GCNNNNNNNGC 2 cut(s) 176, 261
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 524, 527
BstX2I RGATCY 3 cut(s) 40, 327, 559
BstYI RGATCY 3 cut(s) 40, 327, 559
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 80
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 168
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 346, 587
Csp6I GTAC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 4 cut(s) 167, 272, 350, 446
CviJI RGCY 9 cut(s) 80, 94, 202, 228, 391, 436, 500, 518, 575
CviKI_1 RGCY 9 cut(s) 80, 94, 202, 228, 391, 436, 500, 518, 575
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 431
DpnI GATC 4 cut(s) 42, 329, 464, 561
DpnII GATC 4 cut(s) 40, 327, 462, 559
DraI TTTAAA 1 cut(s) 148
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 346, 587
Eco53kI GAGCTC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 4 cut(s) 170, 275, 353, 449
FaiI YATR 7 cut(s) 168, 191, 198, 207, 273, 351, 447
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 4 cut(s) 166, 271, 349, 445
Fnu4HI GCNGC 2 cut(s) 513, 516
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 513, 516
GluI GCNGC 2 cut(s) 513, 516
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 4 cut(s) 170, 275, 353, 449
HinfI GANTC 3 cut(s) 397, 427, 494
Hpy166II GTNNAC 3 cut(s) 124, 457, 459
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 6 cut(s) 272, 407, 466, 491, 504, 570
Hpy8I GTNNAC 3 cut(s) 124, 457, 459
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 181, 463
HpyCH4V TGCA 6 cut(s) 10, 86, 264, 314, 449, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 261
HpyF3I CTNAG 1 cut(s) 431
Hsp92II CATG 4 cut(s) 170, 275, 353, 449
Kzo9I GATC 4 cut(s) 40, 327, 462, 559
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 59, 86, 112, 214, 392, 451, 522
Lsp1109I GCAGC 2 cut(s) 524, 527
LweI GCATC 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 418, 551
MalI GATC 4 cut(s) 42, 329, 464, 561
MboI GATC 4 cut(s) 40, 327, 462, 559
MboII GAAGA 1 cut(s) 386
MflI RGATCY 3 cut(s) 40, 327, 559
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 5 cut(s) 24, 66, 156, 381, 597
MnlI CCTC 4 cut(s) 70, 313, 369, 372
Mph1103I ATGCAT 1 cut(s) 451
MseI TTAA 4 cut(s) 132, 147, 186, 534
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 176, 261
NdeII GATC 4 cut(s) 40, 327, 462, 559
NlaIII CATG 4 cut(s) 170, 275, 353, 449
NlaIV GGNNCC 4 cut(s) 42, 203, 347, 561
NmuCI GTSAC 2 cut(s) 418, 551
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 2 cut(s) 458, 481
PfeI GAWTC 3 cut(s) 397, 427, 494
PkrI GCNGC 2 cut(s) 514, 517
PpuMI RGGWCCY 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 4 cut(s) 42, 203, 347, 561
PspPI GGNCC 2 cut(s) 346, 587
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 3 cut(s) 40, 327, 559
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 4 cut(s) 132, 147, 186, 534
SatI GCNGC 2 cut(s) 513, 516
Sau3AI GATC 4 cut(s) 40, 327, 462, 559
Sau96I GGNCC 2 cut(s) 346, 587
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 577
SetI ASST 7 cut(s) 75, 230, 324, 511, 520, 577, 589
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 346, 587
SphI GCATGC 1 cut(s) 170
Sse9I AATT 5 cut(s) 24, 66, 156, 381, 597
SsiI CCGC 3 cut(s) 38, 245, 563
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 484
TasI AATT 5 cut(s) 24, 66, 156, 381, 597
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 3 cut(s) 397, 427, 494
Tru1I TTAA 4 cut(s) 132, 147, 186, 534
Tru9I TTAA 4 cut(s) 132, 147, 186, 534
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 418, 551
TseI GCWGC 2 cut(s) 512, 515
Tsp45I GTSAC 2 cut(s) 418, 551
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 346, 587
XapI RAATTY 2 cut(s) 156, 597
XceI RCATGY 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.