AT1G60720

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012717
Physical Location & Seq
Forward (+)
22356860 .. 22357941
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60720.1

Sequence Viewer

Length: 870 bp
ATGCTCTTGTTCCTTAGACCTTTGGCGGAGCAATTTGTTAAATGCAACTTGGGTAATGGCCGCATAGCTCACTTCTGGCATGACAGTTGGACTTCCCTTGGCCCGCTGATAAAGGTTATGGGTGATTATGGCTCCAGATCACTTCGCATCCCTCTTAACGCTAGGGTGGTTGAGGCTCTTGGGGTTAATGGCTGGAAGCTCCCCCTTTCTCGGTCTGCTCCAGCTCAAGCCATCCATGACCACATCTCTACCATCACGACCCCCTCTCCTGCTACAATTGAAGACTCCTTTGATTGGGTTGTTGGTGGTGTTGTTTGTCAAGGTTTCTCTTCGGCAAGGACTTGGGATGCTATTAGACCAAGAGCACCGGAATTGGACTGGGCAAAGGCTGTTTGGTTCAAGGGTGCTGTTCCTAAGCATGCCTTCAACATGTGGATTAGTCAGTTGGATAGACTCCCAACTCGTCAAAGGCTAGCCTCTTGGGGCCATATCCAGTCTTTCGATTGTTGCTTATGCACTATTGAGACTGAATCCAGAGACCATCTCCTTTTTTCCTGTGAATTTGCGGCTCAAGTTTGGAGATTAGCGTTTTCTCGCTTATGTCCGCGTCAGAGGCTGTTTTGCTCTTGGGCAGAGCTCCTCTCTTGGATGCGTTCTTCCTCTTCTTCGGCGCCTTCCCTCCTCAGAAAAGTCTCAGCCCATGCTATCATCTACAACATTTGGCGTCAGCGCAACAATGTCCTCCATAACAATCTTAGGATCGCTCCTATTATCATCTTCAAGATTGTCGACCGCGAGATTCGTAACATCATCTCCTCTCGTTACCACAGAAAGAGATGGCGCAACCTCATGGTGCTTTGGATTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

289

Amino Acids

33.38

Weight (kDa)

10.4

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 109 - 193 5.6e-24 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 789
AccII CGCG 2 cut(s) 607, 795
AciI CCGC 6 cut(s) 26, 61, 104, 566, 605, 793
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 560
AcyI GRCGYC 2 cut(s) 671, 724
AfiI CCNNNNNNNGG 2 cut(s) 210, 294
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 4 cut(s) 281, 400, 427, 781
AluBI AGCT 4 cut(s) 68, 199, 224, 637
AluI AGCT 4 cut(s) 68, 199, 224, 637
Alw21I GWGCWC 2 cut(s) 367, 639
Alw26I GTCTC 3 cut(s) 518, 531, 697
AlwI GGATC 1 cut(s) 767
AlwNI CAGNNNCTG 1 cut(s) 616
AoxI GGCC 3 cut(s) 58, 100, 484
ApoI RAATTY 1 cut(s) 560
AspLEI GCGC 3 cut(s) 673, 732, 843
AspS9I GGNCC 2 cut(s) 101, 484
AsuHPI GGTGA 1 cut(s) 134
AsuNHI GCTAGC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 367, 639
BccI CCATC 4 cut(s) 239, 260, 549, 831
BcoDI GTCTC 3 cut(s) 518, 531, 697
BfaI CTAG 2 cut(s) 162, 473
BfoI RGCGCY 1 cut(s) 674
BisI GCNGC 2 cut(s) 61, 567
BlsI GCNGC 2 cut(s) 62, 568
BmgT120I GGNCC 2 cut(s) 101, 484
BmiI GGNNCC 3 cut(s) 133, 485, 672
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 156, 337, 639
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 4 cut(s) 528, 560, 626, 658
BpmI CTGGAG 2 cut(s) 118, 204
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 210, 555
BsaHI GRCGYC 2 cut(s) 671, 724
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 250, 280, 797, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 294
Bse1I ACTGG 2 cut(s) 383, 493
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 4 cut(s) 147, 231, 352, 654
BseLI CCNNNNNNNGG 2 cut(s) 210, 294
BseMII CTCAG 2 cut(s) 697, 708
BseNI ACTGG 2 cut(s) 383, 493
BseRI GAGGAG 3 cut(s) 629, 671, 805
Bsh1236I CGCG 2 cut(s) 607, 795
Bsh1285I CGRYCG 1 cut(s) 793
BshFI GGCC 3 cut(s) 60, 102, 486
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 793
BsiHKAI GWGCWC 2 cut(s) 367, 639
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 210, 294
BsmAI GTCTC 3 cut(s) 518, 531, 697
BsnI GGCC 3 cut(s) 60, 102, 486
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 367, 639
Bsp143I GATC 2 cut(s) 137, 759
BspACI CCGC 6 cut(s) 26, 61, 104, 566, 605, 793
BspANI GGCC 3 cut(s) 60, 102, 486
BspCNI CTCAG 2 cut(s) 696, 707
BspFNI CGCG 2 cut(s) 607, 795
BspLI GGNNCC 3 cut(s) 133, 485, 672
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 767
BspT107I GGYRCC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 531
BsrI ACTGG 2 cut(s) 383, 493
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 137, 759
BssNI GRCGYC 2 cut(s) 671, 724
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 334, 667
BstACI GRCGYC 2 cut(s) 671, 724
BstC8I GCNNGC 3 cut(s) 104, 420, 474
BstDEI CTNAG 5 cut(s) 14, 414, 683, 694, 755
BstF5I GGATG 4 cut(s) 147, 231, 352, 654
BstFNI CGCG 2 cut(s) 607, 795
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 3 cut(s) 673, 732, 843
BstKTI GATC 2 cut(s) 140, 762
BstMAI GTCTC 3 cut(s) 518, 531, 697
BstMBI GATC 2 cut(s) 137, 759
BstMCI CGRYCG 1 cut(s) 793
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNSI RCATGY 2 cut(s) 422, 433
BstUI CGCG 2 cut(s) 607, 795
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 3 cut(s) 60, 102, 486
BtsCI GGATG 4 cut(s) 147, 231, 352, 654
Cac8I GCNNGC 3 cut(s) 104, 420, 474
CaiI CAGNNNCTG 1 cut(s) 616
CfoI GCGC 3 cut(s) 673, 732, 843
Cfr13I GGNCC 2 cut(s) 101, 484
CseI GACGC 2 cut(s) 596, 713
CviAII CATG 6 cut(s) 80, 236, 419, 430, 701, 850
DdeI CTNAG 5 cut(s) 14, 414, 683, 694, 755
DinI GGCGCC 1 cut(s) 672
DpnI GATC 2 cut(s) 139, 761
DpnII GATC 2 cut(s) 137, 759
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 334, 667
EarI CTCTTC 2 cut(s) 334, 667
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 639
EgeI GGCGCC 1 cut(s) 672
EheI GGCGCC 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 6 cut(s) 83, 239, 422, 433, 704, 853
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 6 cut(s) 79, 235, 418, 429, 700, 849
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 61, 567
FokI GGATG 4 cut(s) 134, 218, 359, 661
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 2 cut(s) 61, 567
FspBI CTAG 2 cut(s) 162, 473
GlaI GCGC 3 cut(s) 672, 731, 842
GluI GCNGC 2 cut(s) 61, 567
GsuI CTGGAG 2 cut(s) 118, 204
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 3 cut(s) 60, 102, 486
HapII CCGG 1 cut(s) 368
HgaI GACGC 2 cut(s) 596, 713
HhaI GCGC 3 cut(s) 673, 732, 843
Hin1I GRCGYC 2 cut(s) 671, 724
Hin1II CATG 6 cut(s) 83, 239, 422, 433, 704, 853
Hin6I GCGC 3 cut(s) 671, 730, 841
HinP1I GCGC 3 cut(s) 671, 730, 841
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 5 cut(s) 284, 453, 530, 799, 862
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 2 cut(s) 612, 686
Hpy188III TCNNGA 4 cut(s) 135, 256, 534, 781
Hpy8I GTNNAC 1 cut(s) 790
HpyAV CCTTC 2 cut(s) 433, 684
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 45, 516
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpyF3I CTNAG 5 cut(s) 14, 414, 683, 694, 755
Hsp92I GRCGYC 2 cut(s) 671, 724
Hsp92II CATG 6 cut(s) 83, 239, 422, 433, 704, 853
HspAI GCGC 3 cut(s) 671, 730, 841
KasI GGCGCC 1 cut(s) 670
Kzo9I GATC 2 cut(s) 137, 759
LmnI GCTCC 6 cut(s) 28, 137, 204, 223, 642, 769
LweI GCATC 3 cut(s) 156, 337, 639
MaeI CTAG 2 cut(s) 162, 473
MaeIII GTNAC 2 cut(s) 803, 821
MalI GATC 2 cut(s) 139, 761
MboI GATC 2 cut(s) 137, 759
MboII GAAGA 6 cut(s) 293, 321, 648, 654, 657, 769
MfeI CAATTG 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 367, 639
MluCI AATT 4 cut(s) 32, 276, 371, 560
Mly113I GGCGCC 1 cut(s) 671
MlyI GAGTC 2 cut(s) 278, 447
MmeI TCCRAC 2 cut(s) 68, 426
MseI TTAA 3 cut(s) 39, 156, 186
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 368
MunI CAATTG 1 cut(s) 276
MvnI CGCG 2 cut(s) 607, 795
MwoI GCNNNNNNNGC 1 cut(s) 613
NarI GGCGCC 1 cut(s) 671
NdeII GATC 2 cut(s) 137, 759
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 6 cut(s) 83, 239, 422, 433, 704, 853
NlaIV GGNNCC 3 cut(s) 133, 485, 672
NspI RCATGY 2 cut(s) 422, 433
PaeI GCATGC 1 cut(s) 422
PciI ACATGT 1 cut(s) 429
PfeI GAWTC 3 cut(s) 530, 799, 862
PkrI GCNGC 2 cut(s) 62, 568
PleI GAGTC 2 cut(s) 278, 447
PluTI GGCGCC 1 cut(s) 674
PpsI GAGTC 2 cut(s) 278, 447
PscI ACATGT 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 639
PspN4I GGNNCC 3 cut(s) 133, 485, 672
PspPI GGNCC 2 cut(s) 101, 484
PstNI CAGNNNCTG 1 cut(s) 616
SacI GAGCTC 1 cut(s) 639
SalI GTCGAC 1 cut(s) 788
SaqAI TTAA 3 cut(s) 39, 156, 186
SatI GCNGC 2 cut(s) 61, 567
Sau3AI GATC 2 cut(s) 137, 759
Sau96I GGNCC 2 cut(s) 101, 484
SchI GAGTC 2 cut(s) 278, 447
SduI GDGCHC 2 cut(s) 367, 639
SetI ASST 8 cut(s) 22, 70, 117, 201, 226, 325, 639, 849
SfaNI GCATC 3 cut(s) 156, 337, 639
SfoI GGCGCC 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 225, 570
SmoI CTYRAG 2 cut(s) 225, 570
SphI GCATGC 1 cut(s) 422
Sse9I AATT 4 cut(s) 32, 276, 371, 560
SsiI CCGC 6 cut(s) 26, 61, 104, 566, 605, 793
SspDI GGCGCC 1 cut(s) 670
SspMI CTAG 2 cut(s) 162, 473
SstI GAGCTC 1 cut(s) 639
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 501, 789
TaqII GACCGA 1 cut(s) 201
TasI AATT 4 cut(s) 32, 276, 371, 560
TauI GCSGC 2 cut(s) 63, 569
TfiI GAWTC 3 cut(s) 530, 799, 862
Tru1I TTAA 3 cut(s) 39, 156, 186
Tru9I TTAA 3 cut(s) 39, 156, 186
XapI RAATTY 1 cut(s) 560
XceI RCATGY 2 cut(s) 422, 433
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 2 cut(s) 162, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.