AT1G44770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013484
Physical Location & Seq
Reverse (-)
16907537 .. 16909572
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44770.1

Sequence Viewer

Length: 816 bp
ATGACGAGTCACCACGCGATCGAAGTGACGAAGACGGTGCTGGAAGTAGCCGACGTAGCATGGACCGCGGTGGAAACTTACCATCACCACCACCACCACCAAGACGAAAATCACGAGTCAACGAATCCAATTTCTGATCCACGAGATCGTGAATTAGAAGCTCTTCGTCAAGAGAATCGTCGTCTCAGGACTTTGCTTGAATCGAATCTTAAACTCTTTGAGACTCTCGCTGAATCTGCTGCGTTCTCTCATGATTGCCCTAGCGACCTCTATGCTAGGCTTGTAACGATGGTTACTTCAAGAGATTTCTTGGCTAGATTAGAGAATCTAAGACAAGCTTTATCTAATGGAACTCAGAATCAATTTCCATTCAAGGAACCAACAGAAGATGATGTGAAGACTGTTGAAGTTCTTATAGAGATGGATCATCAAGAGCCAAGTTGGTGGGTTTTAGTTACTGATGATATGGTTCCTAGTAATGTCGAGGAACAAAGCGCGATCGATAACGAACATTACATTGTTGTGAATGAAGAACATGTGATTGATGCTGTTGCTCACTTTTTGGCTAAATGTATTATGTCAAATCCCAAAGCTAAGAATCTCAAACCTGAAGAGCTTCAGAAACTTTTGGTGCAAGAAGTTACTGCTCTGAGCAAGGTAGGGAAGGTAGTGGATATATGGCATGCTGGGAAAATGTTCTACACACTGTCCACTTGGGGACTTGCATTTGGAGGGTTATACCAAGCTCGTGGTGTGCTGAAGATAGCTGCTAAGGGTGTTCATGCGACCAGCAAGGTTGTTCTTAGGGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.76

Weight (kDa)

5.63

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 17, 68, 497
AciI CCGC 2 cut(s) 66, 68
AclWI GGATC 2 cut(s) 131, 432
AcuI CTGAAG 3 cut(s) 602, 630, 779
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 4 cut(s) 200, 300, 373, 407
AluBI AGCT 6 cut(s) 161, 338, 593, 616, 746, 767
AluI AGCT 6 cut(s) 161, 338, 593, 616, 746, 767
Alw26I GTCTC 2 cut(s) 188, 215
AlwI GGATC 2 cut(s) 131, 432
ApeKI GCWGC 2 cut(s) 239, 767
Asp700I GAANNNNTTC 3 cut(s) 162, 615, 695
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 811
BauI CACGAG 3 cut(s) 113, 141, 747
BbsI GAAGAC 2 cut(s) 38, 404
BbvI GCAGC 2 cut(s) 226, 754
BccI CCATC 3 cut(s) 90, 283, 415
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 254, 288
BcoDI GTCTC 2 cut(s) 188, 215
BfaI CTAG 4 cut(s) 261, 276, 315, 474
BisI GCNGC 2 cut(s) 240, 768
BlsI GCNGC 2 cut(s) 241, 769
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 378, 471
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 38, 404
Bpu10I CCTNAGC 1 cut(s) 771
Bsa29I ATCGAT 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 199, 368, 641
BseXI GCAGC 2 cut(s) 226, 754
BseYI CCCAGC 1 cut(s) 686
Bsh1236I CGCG 3 cut(s) 17, 68, 497
Bsh1285I CGRYCG 2 cut(s) 21, 501
BshVI ATCGAT 1 cut(s) 501
BsiEI CGRYCG 2 cut(s) 21, 501
BslFI GGGAC 1 cut(s) 732
BsmAI GTCTC 2 cut(s) 188, 215
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 811
Bsp143I GATC 5 cut(s) 18, 136, 145, 424, 498
BspACI CCGC 2 cut(s) 66, 68
BspCNI CTCAG 3 cut(s) 198, 367, 642
BspDI ATCGAT 1 cut(s) 501
BspFNI CGCG 3 cut(s) 17, 68, 497
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 378, 471
BspPI GGATC 2 cut(s) 131, 432
BspQI GCTCTTC 2 cut(s) 168, 606
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 5 cut(s) 18, 136, 145, 424, 498
BssSI CACGAG 3 cut(s) 113, 141, 747
Bst2BI CACGAG 3 cut(s) 113, 141, 747
Bst4CI ACNGT 3 cut(s) 37, 403, 708
Bst6I CTCTTC 2 cut(s) 168, 606
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 7 cut(s) 185, 329, 354, 594, 650, 771, 803
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 3 cut(s) 17, 68, 497
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 5 cut(s) 21, 139, 148, 427, 501
BstMAI GTCTC 2 cut(s) 188, 215
BstMBI GATC 5 cut(s) 18, 136, 145, 424, 498
BstMCI CGRYCG 2 cut(s) 21, 501
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 236
BstNSI RCATGY 2 cut(s) 539, 686
BstUI CGCG 3 cut(s) 17, 68, 497
BstV1I GCAGC 2 cut(s) 226, 754
BstV2I GAAGAC 2 cut(s) 38, 404
BstXI CCANNNNNNTGG 2 cut(s) 444, 749
Bsu15I ATCGAT 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 684
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 501
CviAII CATG 5 cut(s) 60, 251, 536, 683, 782
DdeI CTNAG 7 cut(s) 185, 329, 354, 594, 650, 771, 803
DpnI GATC 5 cut(s) 20, 138, 147, 426, 500
DpnII GATC 5 cut(s) 18, 136, 145, 424, 498
Eam1104I CTCTTC 2 cut(s) 168, 606
EarI CTCTTC 2 cut(s) 168, 606
Eco24I GRGCYC 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 3 cut(s) 602, 630, 779
EcoT38I GRGCYC 1 cut(s) 811
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 5 cut(s) 63, 254, 539, 686, 785
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 732
FatI CATG 5 cut(s) 59, 250, 535, 682, 781
Fnu4HI GCNGC 2 cut(s) 240, 768
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 2 cut(s) 240, 768
FspBI CTAG 4 cut(s) 261, 276, 315, 474
GlaI GCGC 1 cut(s) 496
GluI GCNGC 2 cut(s) 240, 768
GsaI CCCAGC 1 cut(s) 690
HhaI GCGC 1 cut(s) 497
Hin1II CATG 5 cut(s) 63, 254, 539, 686, 785
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 336
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 120, 711
Hpy188I TCNGA 4 cut(s) 136, 357, 621, 651
Hpy188III TCNNGA 7 cut(s) 113, 149, 170, 187, 251, 300, 431
Hpy8I GTNNAC 2 cut(s) 120, 711
Hpy99I CGWCG 2 cut(s) 56, 183
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 3 cut(s) 37, 403, 708
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 634, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 236
HpyF3I CTNAG 7 cut(s) 185, 329, 354, 594, 650, 771, 803
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 5 cut(s) 63, 254, 539, 686, 785
HspAI GCGC 1 cut(s) 495
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 5 cut(s) 18, 136, 145, 424, 498
LguI GCTCTTC 2 cut(s) 168, 606
LpnPI CCDG 5 cut(s) 26, 172, 621, 672, 802
Lsp1109I GCAGC 2 cut(s) 226, 754
LweI GCATC 1 cut(s) 535
MaeI CTAG 4 cut(s) 261, 276, 315, 474
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 6 cut(s) 8, 25, 283, 292, 454, 640
MalI GATC 5 cut(s) 20, 138, 147, 426, 500
MboI GATC 5 cut(s) 18, 136, 145, 424, 498
MboII GAAGA 7 cut(s) 43, 155, 398, 409, 542, 623, 772
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 3 cut(s) 129, 152, 362
MlyI GAGTC 3 cut(s) 16, 125, 217
MnlI CCTC 3 cut(s) 278, 478, 725
MroXI GAANNNNTTC 3 cut(s) 162, 615, 695
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 68
MvnI CGCG 3 cut(s) 17, 68, 497
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 236
NdeII GATC 5 cut(s) 18, 136, 145, 424, 498
NlaIII CATG 5 cut(s) 63, 254, 539, 686, 785
NlaIV GGNNCC 2 cut(s) 378, 471
NmuCI GTSAC 2 cut(s) 8, 25
NspI RCATGY 2 cut(s) 539, 686
PaeI GCATGC 1 cut(s) 686
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 535
PciSI GCTCTTC 2 cut(s) 168, 606
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 3 cut(s) 162, 615, 695
PfeI GAWTC 8 cut(s) 124, 175, 200, 205, 233, 325, 358, 598
PkrI GCNGC 2 cut(s) 241, 769
Ple19I CGATCG 2 cut(s) 21, 501
PleI GAGTC 3 cut(s) 15, 124, 217
PpsI GAGTC 3 cut(s) 15, 124, 217
PscI ACATGT 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 378, 471
PspPI GGNCC 1 cut(s) 63
PvuI CGATCG 2 cut(s) 21, 501
RseI CAYNNNNRTG 1 cut(s) 521
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 2 cut(s) 168, 606
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 240, 768
Sau3AI GATC 5 cut(s) 18, 136, 145, 424, 498
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 3 cut(s) 16, 125, 217
SduI GDGCHC 1 cut(s) 811
SfaNI GCATC 1 cut(s) 535
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 521
SphI GCATGC 1 cut(s) 686
Sse9I AATT 3 cut(s) 129, 152, 362
SsiI CCGC 2 cut(s) 66, 68
SspMI CTAG 4 cut(s) 261, 276, 315, 474
TaaI ACNGT 3 cut(s) 37, 403, 708
TaiI ACGT 1 cut(s) 57
TaqI TCGA 4 cut(s) 21, 203, 483, 501
TasI AATT 3 cut(s) 129, 152, 362
TfiI GAWTC 8 cut(s) 124, 175, 200, 205, 233, 325, 358, 598
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 2 cut(s) 8, 25
TseI GCWGC 2 cut(s) 239, 767
Tsp45I GTSAC 2 cut(s) 8, 25
TspDTI ATGAA 2 cut(s) 543, 770
TspRI CASTG 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 63
XceI RCATGY 2 cut(s) 539, 686
XmnI GAANNNNTTC 3 cut(s) 162, 615, 695
XspI CTAG 4 cut(s) 261, 276, 315, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.