RLG00000011785

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013484
Physical Location & Seq
Reverse (-)
12638110 .. 12639913
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011785

Sequence Viewer

Length: 810 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGACGGCCATGGAGTGCGGTCACCACCACCTCCGCCACGAACACGAGCACAACCACGAAGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCGCTGGAGCAGAATCTCAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCGCGCCTTGTAGCTACGGTGAATTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGCTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATTGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCAAACCCTAAAGCTCGGAACATGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAACGGGTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTATGCCTTGTCCACCTGGGGACTTGCTCTAGCTGGGTTGTATAGGACCCGTGCTGTAATAAGGCTTGCTGCGATGGGGGTGCATACAACAAGCAAAGTGCTTATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.96

Weight (kDa)

5.65

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 137, 277
AciI CCGC 3 cut(s) 78, 94, 181
AcoI YGGCCR 2 cut(s) 66, 558
AcsI RAATTY 2 cut(s) 295, 402
AcuI CTGAAG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 250, 367
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 707
AluBI AGCT 9 cut(s) 170, 214, 287, 326, 398, 435, 587, 688, 725
AluI AGCT 9 cut(s) 170, 214, 287, 326, 398, 435, 587, 688, 725
Alw21I GWGCWC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 3 cut(s) 66, 129, 558
ApeKI GCWGC 3 cut(s) 163, 214, 761
ApoI RAATTY 2 cut(s) 295, 402
AspLEI GCGC 4 cut(s) 137, 163, 277, 279
AspS9I GGNCC 1 cut(s) 738
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 74, 304, 460
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 560
BauI CACGAG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 150, 201, 748
BccI CCATC 2 cut(s) 533, 760
BceAI ACGGC 2 cut(s) 2, 81
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 1 cut(s) 709
BcnI CCSGG 1 cut(s) 468
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 4 cut(s) 164, 182, 215, 762
BlsI GCNGC 4 cut(s) 165, 183, 216, 763
Bme1390I CCNGG 2 cut(s) 468, 709
Bme18I GGWCC 1 cut(s) 738
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 738
BmiI GGNNCC 2 cut(s) 16, 740
BmrFI CCNGG 2 cut(s) 468, 709
BpmI CTGGAG 2 cut(s) 62, 218
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 69, 126, 467, 708
BsaWI WCCGGW 1 cut(s) 601
Bse118I RCCGGY 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 4 cut(s) 69, 126, 467, 708
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 1 cut(s) 351
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 162, 176
BsePI GCGCGC 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 539, 620
BseXI GCAGC 3 cut(s) 150, 201, 748
BseYI CCCAGC 2 cut(s) 680, 725
Bsh1236I CGCG 2 cut(s) 137, 277
BshFI GGCC 3 cut(s) 68, 131, 560
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 132, 467, 602
BslFI GGGAC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 3 cut(s) 68, 131, 560
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 3 cut(s) 78, 94, 181
BspANI GGCC 3 cut(s) 68, 131, 560
BspCNI CTCAG 2 cut(s) 163, 177
BspFNI CGCG 2 cut(s) 137, 277
BspLI GGNNCC 2 cut(s) 16, 740
BspQI GCTCTTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 810
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 4 cut(s) 69, 126, 467, 708
BssHII GCGCGC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 69, 126
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 37, 292
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 5 cut(s) 133, 168, 277, 678, 759
BstDEI CTNAG 2 cut(s) 171, 185
BstDSI CCRYGG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 2 cut(s) 137, 277
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 4 cut(s) 137, 163, 277, 279
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 167
BstNI CCWGG 1 cut(s) 709
BstNSI RCATGY 2 cut(s) 533, 680
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 466, 707
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 2 cut(s) 137, 277
BstV1I GCAGC 3 cut(s) 150, 201, 748
BsuRI GGCC 3 cut(s) 68, 131, 560
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 779
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 5 cut(s) 133, 168, 277, 678, 759
CfoI GCGC 4 cut(s) 137, 163, 277, 279
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 738
CviAII CATG 4 cut(s) 70, 530, 595, 677
DdeI CTNAG 2 cut(s) 171, 185
EaeI YGGCCR 2 cut(s) 66, 558
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 69, 126
Eco47I GGWCC 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 738
EcoO65I GGTNACC 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 69, 126
ErhI CCWWGG 2 cut(s) 69, 126
FaeI CATG 4 cut(s) 73, 533, 598, 680
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 1 cut(s) 726
FatI CATG 4 cut(s) 69, 529, 594, 676
Fnu4HI GCNGC 4 cut(s) 164, 182, 215, 762
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 4 cut(s) 164, 182, 215, 762
FspBI CTAG 1 cut(s) 722
GlaI GCGC 4 cut(s) 136, 162, 276, 278
GluI GCNGC 4 cut(s) 164, 182, 215, 762
GsaI CCCAGC 2 cut(s) 684, 729
GsuI CTGGAG 2 cut(s) 62, 218
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 68, 131, 560
HapII CCGG 3 cut(s) 132, 467, 602
HhaI GCGC 4 cut(s) 137, 163, 277, 279
Hin1II CATG 4 cut(s) 73, 533, 598, 680
Hin6I GCGC 4 cut(s) 135, 161, 275, 277
HinP1I GCGC 4 cut(s) 135, 161, 275, 277
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 3 cut(s) 175, 205, 233
HpaII CCGG 3 cut(s) 132, 467, 602
HphI GGTGA 3 cut(s) 74, 304, 460
Hpy166II GTNNAC 3 cut(s) 63, 418, 705
Hpy188I TCNGA 3 cut(s) 145, 301, 591
Hpy188III TCNNGA 3 cut(s) 220, 263, 310
Hpy8I GTNNAC 3 cut(s) 63, 418, 705
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 2 cut(s) 37, 292
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 351, 548, 613, 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 167
HpyF3I CTNAG 2 cut(s) 171, 185
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 73, 533, 598, 680
HspAI GCGC 4 cut(s) 135, 161, 275, 277
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 3 cut(s) 14, 199, 526
Lsp1109I GCAGC 3 cut(s) 150, 201, 748
MaeI CTAG 1 cut(s) 722
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 80, 448
MboII GAAGA 3 cut(s) 131, 320, 467
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 7 cut(s) 152, 295, 318, 402, 492, 618, 650
MluNI TGGCCA 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 168
Mox20I TGGCCA 1 cut(s) 560
MroNI GCCGGC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 560
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 3 cut(s) 132, 467, 602
MspR9I CCNGG 2 cut(s) 468, 709
MvaI CCWGG 1 cut(s) 709
MvnI CGCG 2 cut(s) 137, 277
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 167
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 468
NcoI CCATGG 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 73, 533, 598, 680
NlaIV GGNNCC 2 cut(s) 16, 740
NmuCI GTSAC 2 cut(s) 80, 448
NspI RCATGY 2 cut(s) 533, 680
PaeI GCATGC 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 218
PauI GCGCGC 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 175, 205, 233
PkrI GCNGC 4 cut(s) 165, 183, 216, 763
PpuMI RGGWCCY 1 cut(s) 738
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 707
PspEI GGTNACC 1 cut(s) 80
PspFI CCCAGC 2 cut(s) 680, 725
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 2 cut(s) 16, 740
PspPI GGNCC 1 cut(s) 738
PspPPI RGGWCCY 1 cut(s) 738
PteI GCGCGC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 4 cut(s) 164, 182, 215, 762
Sau96I GGNCC 1 cut(s) 738
ScrFI CCNGG 2 cut(s) 468, 709
SduI GDGCHC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 209, 218
SmoI CTYRAG 2 cut(s) 209, 218
SphI GCATGC 1 cut(s) 680
Sse9I AATT 7 cut(s) 152, 295, 318, 402, 492, 618, 650
SsiI CCGC 3 cut(s) 78, 94, 181
SspMI CTAG 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 466, 707
StyI CCWWGG 2 cut(s) 69, 126
TaaI ACNGT 2 cut(s) 37, 292
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 219
TasI AATT 7 cut(s) 152, 295, 318, 402, 492, 618, 650
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 3 cut(s) 175, 205, 233
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 2 cut(s) 80, 448
TseI GCWGC 3 cut(s) 163, 214, 761
Tsp45I GTSAC 2 cut(s) 80, 448
TspGWI ACGGA 2 cut(s) 27, 467
VpaK11BI GGWCC 1 cut(s) 738
XapI RAATTY 2 cut(s) 295, 402
XceI RCATGY 2 cut(s) 533, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.