pycom15g31390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013484
Physical Location & Seq
Reverse (-)
29855017 .. 29855947
931 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31390.1

Sequence Viewer

Length: 648 bp
ATGGGAGGACATGGAGCGATAGAGGTGGCCAAGACGGTGATGGAGGTTGCCGACGTGGCGTGGACCGCCATGGAAAACGGCCGCCATCACCTCCACCACGACGACCACGAGGGGACCAAGTGTGGGGTTTCCGACGAAGAACTGGAGGCTCTGCGGGCGGAGAATCGGCGGCTGAGGAACTCGCTGGCGCAGAATCTCAAGCTGCTTCAGAACCTGTCCGAGTCGCCTGCGGTGTTGGACGATTGCCCTCCTGATCTGCATGCTCGGTTAGTGGCGACGGTGGAATCGAACAGCTTCTTGACTCGAATCGAAGCTCTTCAGAAGGAATCCATTGATGAATATCAGTTTCCTTTCAAGCCAGCCACAGAAAGCGATTTGGAGAAAGCTGAAGTTCTAATCAAAATCGACAATGAAGAACCCAGTTGGTGGGTGTGGATCACGGATGACATGATTCCGGGTAAAGTCGAGGAGAGGAGTGGGATTGACAATGAGAACTATGTTGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCCAATTTTATGGCTAAGTGTATTGTGTCAAACCCCAAAGCTCGGTTTGGCCTCATGATTTTTTGCTTCCTTGGAATTGCAGAATTTGACGCCGGAGGAGCTGCAGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.93

Weight (kDa)

4.67

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 6 cut(s) 66, 82, 154, 158, 169, 230
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 2 cut(s) 27, 79
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 3 cut(s) 191, 302, 408
AcyI GRCGYC 1 cut(s) 624
AfiI CCNNNNNNNGG 3 cut(s) 123, 426, 576
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 6 cut(s) 202, 294, 314, 386, 575, 635
AluI AGCT 6 cut(s) 202, 294, 314, 386, 575, 635
AlwI GGATC 1 cut(s) 443
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 3 cut(s) 27, 79, 583
ApeKI GCWGC 2 cut(s) 202, 635
ApoI RAATTY 1 cut(s) 617
Asp700I GAANNNNTTC 2 cut(s) 293, 315
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 63, 114
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 49, 80
AvaII GGWCC 2 cut(s) 63, 114
BalI TGGCCA 1 cut(s) 29
BauI CACGAG 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 189, 622
BccI CCATC 3 cut(s) 34, 93, 521
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 636
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 82, 170, 203, 636
BlsI GCNGC 4 cut(s) 83, 171, 204, 637
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 2 cut(s) 63, 114
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 63, 114
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 456
BmrI ACTGGG 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 69, 604
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 426, 576
Bse1I ACTGG 2 cut(s) 147, 420
Bse8I GATNNNNATC 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 69, 604
BseGI GGATG 2 cut(s) 448, 532
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 3 cut(s) 123, 426, 576
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 147, 420
BseRI GAGGAG 4 cut(s) 482, 487, 527, 645
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 2 cut(s) 189, 622
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 29, 81, 585
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 455, 627
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 123, 426, 576
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 29, 81, 585
Bsp143I GATC 2 cut(s) 253, 435
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 6 cut(s) 66, 82, 154, 158, 169, 230
BspANI GGCC 3 cut(s) 29, 81, 585
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 321
BsrI ACTGG 2 cut(s) 147, 420
BssECI CCNNGG 2 cut(s) 69, 604
BssMI GATC 2 cut(s) 253, 435
BssNI GRCGYC 1 cut(s) 624
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 69, 604
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 37, 280
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 624
BstC8I GCNNGC 5 cut(s) 156, 186, 228, 261, 360
BstDEI CTNAG 2 cut(s) 173, 549
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 448, 532
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 256, 438
BstMBI GATC 2 cut(s) 253, 435
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 155, 632
BstNSI RCATGY 2 cut(s) 263, 521
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 189, 622
BstXI CCANNNNNNTGG 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 3 cut(s) 29, 81, 585
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 448, 532
Cac8I GCNNGC 5 cut(s) 156, 186, 228, 261, 360
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 63, 114
CseI GACGC 1 cut(s) 632
CviAII CATG 6 cut(s) 11, 70, 260, 448, 518, 589
DdeI CTNAG 2 cut(s) 173, 549
DpnI GATC 2 cut(s) 255, 437
DpnII GATC 2 cut(s) 253, 435
EaeI YGGCCR 2 cut(s) 27, 79
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 69, 604
Eco47I GGWCC 2 cut(s) 63, 114
Eco52I CGGCCG 1 cut(s) 79
Eco57I CTGAAG 3 cut(s) 191, 302, 408
EcoT14I CCWWGG 2 cut(s) 69, 604
ErhI CCWWGG 2 cut(s) 69, 604
FaeI CATG 6 cut(s) 14, 73, 263, 451, 521, 592
FaiI YATR 8 cut(s) 12, 71, 261, 449, 498, 519, 545, 590
FaqI GGGAC 1 cut(s) 127
FatI CATG 6 cut(s) 10, 69, 259, 447, 517, 588
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 82, 170, 203, 636
FokI GGATG 2 cut(s) 455, 539
Fsp4HI GCNGC 4 cut(s) 82, 170, 203, 636
GlaI GCGC 1 cut(s) 189
GluI GCNGC 4 cut(s) 82, 170, 203, 636
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 3 cut(s) 29, 81, 585
HapII CCGG 2 cut(s) 455, 627
HgaI GACGC 1 cut(s) 632
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 6 cut(s) 14, 73, 263, 451, 521, 592
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 8 cut(s) 163, 193, 221, 284, 301, 306, 326, 451
HpaII CCGG 2 cut(s) 455, 627
HphI GGTGA 2 cut(s) 49, 80
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 133, 210, 220, 321
Hpy188III TCNNGA 3 cut(s) 251, 298, 589
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 4 cut(s) 56, 104, 137, 280
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 37, 280
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 259, 614, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 155, 632
HpyF3I CTNAG 2 cut(s) 173, 549
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 6 cut(s) 14, 73, 263, 451, 521, 592
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 253, 435
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 14, 514, 632
LpnPI CCDG 9 cut(s) 128, 170, 227, 240, 264, 372, 433, 468, 640
Lsp1109I GCAGC 2 cut(s) 189, 622
MaeII ACGT 1 cut(s) 54
MalI GATC 2 cut(s) 255, 437
MboI GATC 2 cut(s) 253, 435
MboII GAAGA 3 cut(s) 149, 308, 425
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 3 cut(s) 538, 609, 617
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 230, 295
MmeI TCCRAC 2 cut(s) 156, 216
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 2 cut(s) 293, 315
MscI TGGCCA 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 2 cut(s) 455, 627
MspR9I CCNGG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 155, 632
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 253, 435
NlaIII CATG 6 cut(s) 14, 73, 263, 451, 521, 592
NlaIV GGNNCC 1 cut(s) 115
NspI RCATGY 2 cut(s) 263, 521
PaeI GCATGC 1 cut(s) 263
PagI TCATGA 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 284
PdmI GAANNNNTTC 2 cut(s) 293, 315
PfeI GAWTC 6 cut(s) 163, 193, 284, 306, 326, 451
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 4 cut(s) 83, 171, 204, 637
PleI GAGTC 2 cut(s) 229, 295
PpsI GAGTC 2 cut(s) 229, 295
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 63, 114
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 321
SatI GCNGC 4 cut(s) 82, 170, 203, 636
Sau3AI GATC 2 cut(s) 253, 435
Sau96I GGNCC 2 cut(s) 63, 114
SchI GAGTC 2 cut(s) 230, 295
ScrFI CCNGG 1 cut(s) 456
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 2 cut(s) 63, 114
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 263
Sse9I AATT 3 cut(s) 538, 609, 617
SsiI CCGC 6 cut(s) 66, 82, 154, 158, 169, 230
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 69, 604
TaaI ACNGT 2 cut(s) 37, 280
TaiI ACGT 1 cut(s) 57
TaqI TCGA 5 cut(s) 287, 304, 309, 405, 465
TasI AATT 3 cut(s) 538, 609, 617
TauI GCSGC 2 cut(s) 84, 172
TfiI GAWTC 6 cut(s) 163, 193, 284, 306, 326, 451
TseI GCWGC 2 cut(s) 202, 635
TspDTI ATGAA 2 cut(s) 351, 426
TspGWI ACGGA 1 cut(s) 455
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 63, 114
XapI RAATTY 1 cut(s) 617
XceI RCATGY 2 cut(s) 263, 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmnI GAANNNNTTC 2 cut(s) 293, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.