Rh6CG380200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013484
Physical Location & Seq
Forward (+)
56656503 .. 56658281
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG380200.1

Sequence Viewer

Length: 813 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGACGGCCATGGAGTACGGCCACCACCACCTCCACCACGAACACGAGCACGAGCACAACGAGGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCTCTGGAGCAGAATCTCAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAATTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATCGACAATGATAGTTATGTGGTTGTTAGCGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGGAATATGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAATGGGTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTATGCCTTGTCCACCTGGGGACTTGCTCTAGCCGGGTTGTATAGGACCCGTGCTGTAATAAGGCTTGCCGCGATGGGGGTGCATACAACAAGCAAAGTGCTTATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.06

Weight (kDa)

5.45

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 140, 767
AciI CCGC 3 cut(s) 184, 280, 765
AcoI YGGCCR 3 cut(s) 66, 79, 561
AcsI RAATTY 2 cut(s) 298, 405
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 590, 771
AgsI TTSAA 2 cut(s) 253, 370
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 710
AluBI AGCT 7 cut(s) 173, 217, 290, 329, 401, 590, 691
AluI AGCT 7 cut(s) 173, 217, 290, 329, 401, 590, 691
Alw21I GWGCWC 2 cut(s) 111, 117
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 4 cut(s) 66, 79, 132, 561
ApeKI GCWGC 2 cut(s) 166, 217
ApoI RAATTY 2 cut(s) 298, 405
AspLEI GCGC 2 cut(s) 140, 166
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 2 cut(s) 471, 730
AsuHPI GGTGA 2 cut(s) 307, 463
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 563
BauI CACGAG 2 cut(s) 104, 110
Bbv12I GWGCWC 2 cut(s) 111, 117
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 153, 204
BccI CCATC 2 cut(s) 536, 763
BceAI ACGGC 3 cut(s) 2, 81, 94
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 1 cut(s) 712
BcnI CCSGG 2 cut(s) 471, 730
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 4 cut(s) 167, 185, 218, 765
BlsI GCNGC 4 cut(s) 168, 186, 219, 766
Bme1390I CCNGG 3 cut(s) 471, 712, 730
Bme18I GGWCC 1 cut(s) 741
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 2 cut(s) 16, 743
BmrFI CCNGG 3 cut(s) 471, 712, 730
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 2 cut(s) 62, 221
Bpu10I CCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 471, 730
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 69, 129, 470, 711
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 771
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 2 cut(s) 642, 813
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 4 cut(s) 69, 129, 470, 711
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 590, 771
BseMI GCAATG 2 cut(s) 642, 813
BseMII CTCAG 2 cut(s) 165, 179
BseRI GAGGAG 2 cut(s) 542, 623
BseXI GCAGC 2 cut(s) 153, 204
BseYI CCCAGC 2 cut(s) 590, 683
Bsh1236I CGCG 2 cut(s) 140, 767
BshFI GGCC 4 cut(s) 68, 81, 134, 563
BsiHKAI GWGCWC 2 cut(s) 111, 117
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 135, 470, 605, 729
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 590, 771
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 4 cut(s) 68, 81, 134, 563
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 111, 117
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 3 cut(s) 184, 280, 765
BspANI GGCC 4 cut(s) 68, 81, 134, 563
BspCNI CTCAG 2 cut(s) 166, 180
BspFNI CGCG 2 cut(s) 140, 767
BspLI GGNNCC 2 cut(s) 16, 743
BspQI GCTCTTC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 642, 813
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 69, 129, 470, 711
BssSI CACGAG 2 cut(s) 104, 110
BssT1I CCWWGG 2 cut(s) 69, 129
Bst2BI CACGAG 2 cut(s) 104, 110
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 2 cut(s) 37, 295
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 5 cut(s) 136, 171, 280, 681, 762
BstDEI CTNAG 2 cut(s) 174, 188
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 2 cut(s) 140, 767
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 140, 166
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 170
BstNI CCWGG 1 cut(s) 712
BstNSI RCATGY 2 cut(s) 536, 683
BstSCI CCNGG 3 cut(s) 469, 710, 728
BstSFI CTRYAG 1 cut(s) 378
BstUI CGCG 2 cut(s) 140, 767
BstV1I GCAGC 2 cut(s) 153, 204
BsuRI GGCC 4 cut(s) 68, 81, 134, 563
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 782
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 547
Cac8I GCNNGC 5 cut(s) 136, 171, 280, 681, 762
CfoI GCGC 2 cut(s) 140, 166
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 741
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 70, 533, 680
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 174, 188
EaeI YGGCCR 3 cut(s) 66, 79, 561
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 69, 129
Eco47I GGWCC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 69, 129
ErhI CCWWGG 2 cut(s) 69, 129
FaeI CATG 3 cut(s) 73, 536, 683
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 729
FatI CATG 3 cut(s) 69, 532, 679
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 4 cut(s) 167, 185, 218, 765
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 4 cut(s) 167, 185, 218, 765
FspBI CTAG 1 cut(s) 725
GlaI GCGC 2 cut(s) 139, 165
GluI GCNGC 4 cut(s) 167, 185, 218, 765
GsaI CCCAGC 2 cut(s) 594, 687
GsuI CTGGAG 2 cut(s) 62, 221
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 4 cut(s) 68, 81, 134, 563
HapII CCGG 4 cut(s) 135, 470, 605, 729
HhaI GCGC 2 cut(s) 140, 166
Hin1II CATG 3 cut(s) 73, 536, 683
Hin6I GCGC 2 cut(s) 138, 164
HinP1I GCGC 2 cut(s) 138, 164
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 4 cut(s) 178, 208, 236, 495
HpaII CCGG 4 cut(s) 135, 470, 605, 729
HphI GGTGA 2 cut(s) 307, 463
Hpy166II GTNNAC 3 cut(s) 63, 421, 708
Hpy188I TCNGA 2 cut(s) 148, 304
Hpy188III TCNNGA 4 cut(s) 200, 223, 266, 313
Hpy8I GTNNAC 3 cut(s) 63, 421, 708
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 2 cut(s) 37, 295
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 354, 551, 616, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 170
HpyF3I CTNAG 2 cut(s) 174, 188
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 73, 536, 683
HspAI GCGC 2 cut(s) 138, 164
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 3 cut(s) 14, 202, 529
Lsp1109I GCAGC 2 cut(s) 153, 204
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 451
MboII GAAGA 2 cut(s) 323, 470
MhlI GDGCHC 2 cut(s) 111, 117
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 6 cut(s) 155, 298, 321, 405, 621, 653
MluNI TGGCCA 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 563
MroNI GCCGGC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 563
MseI TTAA 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 563
MspI CCGG 4 cut(s) 135, 470, 605, 729
MspR9I CCNGG 3 cut(s) 471, 712, 730
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 2 cut(s) 140, 767
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 170
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 471, 730
NcoI CCATGG 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 3 cut(s) 73, 536, 683
NlaIV GGNNCC 2 cut(s) 16, 743
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 2 cut(s) 536, 683
PaeI GCATGC 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 4 cut(s) 178, 208, 236, 495
PkrI GCNGC 4 cut(s) 168, 186, 219, 766
PpuMI RGGWCCY 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 710
PspFI CCCAGC 2 cut(s) 590, 683
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 16, 743
PspPI GGNCC 1 cut(s) 741
PspPPI RGGWCCY 1 cut(s) 741
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 4 cut(s) 167, 185, 218, 765
Sau96I GGNCC 1 cut(s) 741
ScrFI CCNGG 3 cut(s) 471, 712, 730
SduI GDGCHC 2 cut(s) 111, 117
SfcI CTRYAG 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 741
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 212, 221
SmoI CTYRAG 2 cut(s) 212, 221
SphI GCATGC 1 cut(s) 683
Sse9I AATT 6 cut(s) 155, 298, 321, 405, 621, 653
SsiI CCGC 3 cut(s) 184, 280, 765
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 3 cut(s) 469, 710, 728
StyI CCWWGG 2 cut(s) 69, 129
TaaI ACNGT 2 cut(s) 37, 295
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 222, 498, 578
TasI AATT 6 cut(s) 155, 298, 321, 405, 621, 653
TauI GCSGC 2 cut(s) 187, 767
TfiI GAWTC 4 cut(s) 178, 208, 236, 495
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 166, 217
Tsp45I GTSAC 1 cut(s) 451
TspGWI ACGGA 2 cut(s) 27, 470
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 2 cut(s) 298, 405
XceI RCATGY 2 cut(s) 536, 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 221
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.