Rh6DG366800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013484
Physical Location & Seq
Forward (+)
56324091 .. 56326278
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG366800.1

Sequence Viewer

Length: 681 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGACGGCGATGGAGTGCGGCCACCACCACCTCGACCACCTCCGCCACGAGCACGAAGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCGCTGGAGCAGAACCTGAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAATTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTCTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATTGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGGAACATGACACCGGAGGAGTTGCAGAAAAGTAAGTTTCTTCAAGTTCTTTCTGGATTAACTGGCTCTGTGTTTGAAATTTGTTTAGTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.21

Weight (kDa)

4.77

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 4 cut(s) 78, 103, 178, 274
AcoI YGGCCR 2 cut(s) 79, 555
AcsI RAATTY 3 cut(s) 292, 399, 663
AcuI CTGAAG 2 cut(s) 227, 311
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 4 cut(s) 247, 364, 629, 662
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 6 cut(s) 167, 211, 284, 323, 395, 584
AluI AGCT 6 cut(s) 167, 211, 284, 323, 395, 584
Alw21I GWGCWC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 79, 126, 555
ApeKI GCWGC 2 cut(s) 160, 211
ApoI RAATTY 3 cut(s) 292, 399, 663
AspLEI GCGC 2 cut(s) 134, 160
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 301, 457
AvaI CYCGRG 1 cut(s) 215
BalI TGGCCA 1 cut(s) 557
BauI CACGAG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 147, 198
BccI CCATC 2 cut(s) 64, 530
BceAI ACGGC 2 cut(s) 2, 81
BcnI CCSGG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 4 cut(s) 79, 161, 179, 212
BlsI GCNGC 4 cut(s) 80, 162, 180, 213
Bme1390I CCNGG 1 cut(s) 465
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 62, 215
Bpu10I CCTNAGC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 123, 464
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 123, 464
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 159, 173
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 2 cut(s) 536, 617
BseXI GCAGC 2 cut(s) 147, 198
BseYI CCCAGC 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 81, 128, 557
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 129, 464, 599
BslI CCNNNNNNNGG 1 cut(s) 584
BsnI GGCC 3 cut(s) 81, 128, 557
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 114
BspACI CCGC 4 cut(s) 78, 103, 178, 274
BspANI GGCC 3 cut(s) 81, 128, 557
BspCNI CTCAG 2 cut(s) 160, 174
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 123, 464
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 37, 289
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 130, 165, 274
BstDEI CTNAG 2 cut(s) 168, 182
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 134, 160
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 164
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 147, 198
BsuRI GGCC 3 cut(s) 81, 128, 557
BtgZI GCGATG 1 cut(s) 83
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 130, 165, 274
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 2 cut(s) 134, 160
Cfr10I RCCGGY 1 cut(s) 128
CviAII CATG 2 cut(s) 527, 592
DdeI CTNAG 2 cut(s) 168, 182
EaeI YGGCCR 2 cut(s) 79, 555
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 227, 311
Eco88I CYCGRG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 530, 595
FaiI YATR 7 cut(s) 270, 458, 507, 528, 554, 569, 593
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 2 cut(s) 526, 591
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 4 cut(s) 79, 161, 179, 212
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 4 cut(s) 79, 161, 179, 212
GlaI GCGC 2 cut(s) 133, 159
GluI GCNGC 4 cut(s) 79, 161, 179, 212
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 62, 215
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 81, 128, 557
HapII CCGG 3 cut(s) 129, 464, 599
HhaI GCGC 2 cut(s) 134, 160
Hin1II CATG 2 cut(s) 530, 595
Hin6I GCGC 2 cut(s) 132, 158
HinP1I GCGC 2 cut(s) 132, 158
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 172, 230
HpaII CCGG 3 cut(s) 129, 464, 599
HphI GGTGA 2 cut(s) 301, 457
Hpy166II GTNNAC 2 cut(s) 63, 415
Hpy188I TCNGA 2 cut(s) 142, 298
Hpy188III TCNNGA 5 cut(s) 217, 260, 307, 341, 639
Hpy8I GTNNAC 2 cut(s) 63, 415
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 37, 289
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 348, 545, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 164
HpyF3I CTNAG 2 cut(s) 168, 182
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 530, 595
HspAI GCGC 2 cut(s) 132, 158
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 3 cut(s) 14, 196, 523
Lsp1109I GCAGC 2 cut(s) 147, 198
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 445
MboII GAAGA 4 cut(s) 128, 317, 464, 617
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 6 cut(s) 149, 292, 315, 399, 489, 663
MluNI TGGCCA 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 165
Mox20I TGGCCA 1 cut(s) 557
MroNI GCCGGC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 557
MseI TTAA 2 cut(s) 318, 644
Msp20I TGGCCA 1 cut(s) 557
MspI CCGG 3 cut(s) 129, 464, 599
MspR9I CCNGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 164
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 465
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 530, 595
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 172, 230
PkrI GCNGC 4 cut(s) 80, 162, 180, 213
PspFI CCCAGC 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 318, 644
SatI GCNGC 4 cut(s) 79, 161, 179, 212
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 6 cut(s) 149, 292, 315, 399, 489, 663
SsiI CCGC 4 cut(s) 78, 103, 178, 274
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 37, 289
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 93, 216, 572
TasI AATT 6 cut(s) 149, 292, 315, 399, 489, 663
TauI GCSGC 2 cut(s) 81, 181
TfiI GAWTC 2 cut(s) 172, 230
Tru1I TTAA 2 cut(s) 318, 644
Tru9I TTAA 2 cut(s) 318, 644
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 160, 211
Tsp45I GTSAC 1 cut(s) 445
TspGWI ACGGA 2 cut(s) 27, 464
XapI RAATTY 3 cut(s) 292, 399, 663
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.