Rroxscaffold_7G00172320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013484
Physical Location & Seq
Reverse (-)
12576413 .. 12578417
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172320.1

Sequence Viewer

Length: 819 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGACGGCCATGGAGTGCGGTCACCACCACCTCGACCACCTCCGCCACGAGCACGAGCACGAGCACGAAGAAACCAAGGCCGGCGCGATCTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCGCTGGAGCAGAATCTCAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAATTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTGGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATCGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGCAACATGACGCCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAACGGGTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTACGCCCTGTCCACCTGGGGACTTGCTCTAGCCGGATTGTATAGGACCCGTGCTGTAATAAGGCTTGCTGCGATGGGGGTGCGTACAACAAGCAAAGTGCTTATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

5.48

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 78, 103, 190, 286
AcoI YGGCCR 2 cut(s) 66, 567
AcsI RAATTY 2 cut(s) 304, 411
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 1 cut(s) 787
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 2 cut(s) 259, 376
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 716
AluBI AGCT 7 cut(s) 179, 223, 296, 335, 407, 596, 697
AluI AGCT 7 cut(s) 179, 223, 296, 335, 407, 596, 697
Alw21I GWGCWC 3 cut(s) 114, 120, 126
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 3 cut(s) 66, 138, 567
ApeKI GCWGC 3 cut(s) 172, 223, 770
ApoI RAATTY 2 cut(s) 304, 411
AspLEI GCGC 2 cut(s) 146, 172
AspS9I GGNCC 2 cut(s) 427, 747
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 74, 313, 469
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 2 cut(s) 427, 747
BalI TGGCCA 1 cut(s) 569
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BauI CACGAG 3 cut(s) 107, 113, 119
Bbv12I GWGCWC 3 cut(s) 114, 120, 126
BbvCI CCTCAGC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 159, 210, 757
BccI CCATC 2 cut(s) 542, 769
BceAI ACGGC 2 cut(s) 2, 81
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BciT130I CCWGG 1 cut(s) 718
BcnI CCSGG 1 cut(s) 477
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 4 cut(s) 173, 191, 224, 771
BlsI GCNGC 4 cut(s) 174, 192, 225, 772
Bme1390I CCNGG 2 cut(s) 477, 718
Bme18I GGWCC 2 cut(s) 427, 747
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 427, 747
BmiI GGNNCC 2 cut(s) 16, 749
BmrFI CCNGG 2 cut(s) 477, 718
BpmI CTGGAG 2 cut(s) 62, 227
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 608
BsaJI CCNNGG 4 cut(s) 69, 135, 476, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 4 cut(s) 69, 135, 476, 717
BseGI GGATG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 171, 185
BseRI GAGGAG 2 cut(s) 548, 629
BseXI GCAGC 3 cut(s) 159, 210, 757
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 68, 140, 569
BsiHKAI GWGCWC 3 cut(s) 114, 120, 126
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 4 cut(s) 141, 476, 611, 735
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 735
BsnI GGCC 3 cut(s) 68, 140, 569
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 3 cut(s) 114, 120, 126
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 4 cut(s) 78, 103, 190, 286
BspANI GGCC 3 cut(s) 68, 140, 569
BspCNI CTCAG 2 cut(s) 172, 186
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 16, 749
BspQI GCTCTTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 69, 135, 476, 717
BssMI GATC 1 cut(s) 147
BssNI GRCGYC 1 cut(s) 608
BssSI CACGAG 3 cut(s) 107, 113, 119
BssT1I CCWWGG 2 cut(s) 69, 135
Bst2BI CACGAG 3 cut(s) 107, 113, 119
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 2 cut(s) 37, 301
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 1 cut(s) 608
BstC8I GCNNGC 6 cut(s) 142, 177, 286, 598, 687, 768
BstDEI CTNAG 2 cut(s) 180, 194
BstDSI CCRYGG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 2 cut(s) 146, 172
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 176
BstNI CCWGG 1 cut(s) 718
BstNSI RCATGY 2 cut(s) 542, 689
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 475, 716
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 159, 210, 757
BsuRI GGCC 3 cut(s) 68, 140, 569
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 788
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 553
Cac8I GCNNGC 6 cut(s) 142, 177, 286, 598, 687, 768
CfoI GCGC 2 cut(s) 146, 172
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 427, 747
CseI GACGC 1 cut(s) 616
Csp6I GTAC 1 cut(s) 786
CviAII CATG 4 cut(s) 70, 539, 604, 686
CviQI GTAC 1 cut(s) 786
DdeI CTNAG 2 cut(s) 180, 194
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EaeI YGGCCR 2 cut(s) 66, 567
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 69, 135
Eco47I GGWCC 2 cut(s) 427, 747
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 747
EcoO65I GGTNACC 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 69, 135
ErhI CCWWGG 2 cut(s) 69, 135
FaeI CATG 4 cut(s) 73, 542, 607, 689
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 1 cut(s) 735
FatI CATG 4 cut(s) 69, 538, 603, 685
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 173, 191, 224, 771
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 4 cut(s) 173, 191, 224, 771
FspBI CTAG 1 cut(s) 731
GlaI GCGC 2 cut(s) 145, 171
GluI GCNGC 4 cut(s) 173, 191, 224, 771
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 2 cut(s) 62, 227
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 3 cut(s) 68, 140, 569
HapII CCGG 4 cut(s) 141, 476, 611, 735
HgaI GACGC 1 cut(s) 616
HhaI GCGC 2 cut(s) 146, 172
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 4 cut(s) 73, 542, 607, 689
Hin6I GCGC 2 cut(s) 144, 170
HinP1I GCGC 2 cut(s) 144, 170
HinfI GANTC 4 cut(s) 184, 214, 242, 501
HpaII CCGG 4 cut(s) 141, 476, 611, 735
HphI GGTGA 3 cut(s) 74, 313, 469
Hpy166II GTNNAC 3 cut(s) 63, 427, 714
Hpy188I TCNGA 2 cut(s) 154, 310
Hpy188III TCNNGA 3 cut(s) 229, 272, 319
Hpy8I GTNNAC 3 cut(s) 63, 427, 714
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 37, 301
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 360, 557, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 176
HpyF3I CTNAG 2 cut(s) 180, 194
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 4 cut(s) 73, 542, 607, 689
HspAI GCGC 2 cut(s) 144, 170
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 3 cut(s) 14, 208, 535
Lsp1109I GCAGC 3 cut(s) 159, 210, 757
MaeI CTAG 1 cut(s) 731
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 80, 457
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 140, 329, 476
MhlI GDGCHC 3 cut(s) 114, 120, 126
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 6 cut(s) 161, 304, 327, 411, 627, 659
MluNI TGGCCA 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 569
MroNI GCCGGC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 4 cut(s) 141, 476, 611, 735
MspR9I CCNGG 2 cut(s) 477, 718
MvaI CCWGG 1 cut(s) 718
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 176
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 69
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 73, 542, 607, 689
NlaIV GGNNCC 2 cut(s) 16, 749
NmuCI GTSAC 2 cut(s) 80, 457
NspI RCATGY 2 cut(s) 542, 689
PaeI GCATGC 1 cut(s) 689
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 4 cut(s) 184, 214, 242, 501
PkrI GCNGC 4 cut(s) 174, 192, 225, 772
PpuMI RGGWCCY 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 716
PspEI GGTNACC 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 16, 749
PspPI GGNCC 2 cut(s) 427, 747
PspPPI RGGWCCY 1 cut(s) 747
RsaI GTAC 1 cut(s) 787
RsaNI GTAC 1 cut(s) 786
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 173, 191, 224, 771
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 427, 747
ScrFI CCNGG 2 cut(s) 477, 718
SduI GDGCHC 3 cut(s) 114, 120, 126
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 2 cut(s) 427, 747
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 218, 227
SmoI CTYRAG 2 cut(s) 218, 227
SphI GCATGC 1 cut(s) 689
Sse9I AATT 6 cut(s) 161, 304, 327, 411, 627, 659
SsiI CCGC 4 cut(s) 78, 103, 190, 286
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 2 cut(s) 475, 716
StyI CCWWGG 2 cut(s) 69, 135
TaaI ACNGT 2 cut(s) 37, 301
TaiI ACGT 1 cut(s) 57
TaqI TCGA 4 cut(s) 93, 228, 504, 584
TasI AATT 6 cut(s) 161, 304, 327, 411, 627, 659
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 184, 214, 242, 501
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 2 cut(s) 80, 457
TseI GCWGC 3 cut(s) 172, 223, 770
Tsp45I GTSAC 2 cut(s) 80, 457
TspGWI ACGGA 2 cut(s) 27, 476
VpaK11BI GGWCC 2 cut(s) 427, 747
XapI RAATTY 2 cut(s) 304, 411
XceI RCATGY 2 cut(s) 542, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.