Rmu_sc0013988.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013988.1
OG0013484
Physical Location & Seq
Forward (+)
12120 .. 14434
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013988.1_g000004.1.cds

Sequence Viewer

Length: 1212 bp
atgataaaagcgtctcccgcacggcgtcgtttgaagggaagcaataaaaaccgcggagttggagtaaattgcgagattgccctctcatattttccagcgaagagacctgacatcatcgataaggcagagaagaagaaaggtcgtcccgaatttcagagagcggcgatgggaggacacggagccgtagaggtcgccaagacggtgctggaggttgctgacgtggcgtggaaggcgatggagtgcggccaccaccacctcgaccacctccgccacgaacacgagcacgagcacaaccacgaagaaaccaaggccggcgcgatttccgacgaggaattggaggcgctgagagctgagaatcggcggctgagaaaatcgctggagcagaacctgaagctgctcgagaacctgactgaatcgcctactctattgaatgattgccctcctgacctgtatgcccgccttgtagctacggtgaattctgaaagcttcttgacgagaattaaagctcttcagcagaaatctgtggattgcaatcactttcctttcaaggttgctacagcttgcattcgagctgagaatcggcggctgaggaaatcgctggagcagaatctcaagctgctcgagaacctaactgaatcgcctactctattgaacgattgccctcctgacctgtatgcccgccttgtagctacggtgaattctgaaagcttcttgacgagaattaaagctcttcagcagaaatctgtggattgcaatcactttcctttcaaggttgctacagggagtgatttggaggaagctgaaattctcatcaatgttgaccagaaagaaccgagttggtgggtttgggtgacggaagatatgcttccggggaatgttgaggaaaggagtggaatcgacaatgatagttatgtggttgttagtgaggagcatgtggtggatggggttgcagattttatggccaagtgtattatgtcgaaccctaaagctgggaatatgacaccggaggagttgcagaaaattgtagcaaaagcaatgggtggtgtgagcaaattggagaaggttttgggtatttggcatgctgggaagctgttttatgccctgtccacctggggacttgctctagccgggttgtataggacccgtgctgtaataaggcttgctgcgatgggggtgcatacaacaagcaaagtgcttatgagggcaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

45.1

Weight (kDa)

7.66

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 2 cut(s) 54, 317
AcoI YGGCCR 2 cut(s) 244, 960
AcsI RAATTY 4 cut(s) 149, 475, 697, 804
AcuI CTGAAG 3 cut(s) 410, 494, 716
AcyI GRCGYC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 989
AgsI TTSAA 5 cut(s) 34, 430, 547, 652, 769
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 1 cut(s) 1109
Alw21I GWGCWC 2 cut(s) 285, 291
Alw26I GTCTC 2 cut(s) 18, 97
AlwNI CAGNNNCTG 1 cut(s) 388
Ama87I CYCGRG 2 cut(s) 398, 620
AoxI GGCC 3 cut(s) 244, 309, 960
ApeKI GCWGC 3 cut(s) 394, 616, 1163
ApoI RAATTY 4 cut(s) 149, 475, 697, 804
AspLEI GCGC 2 cut(s) 317, 343
AspS9I GGNCC 1 cut(s) 1140
AsuC2I CCSGG 2 cut(s) 870, 1129
AsuHPI GGTGA 3 cut(s) 484, 706, 862
AvaI CYCGRG 2 cut(s) 398, 620
AvaII GGWCC 1 cut(s) 1140
BalI TGGCCA 1 cut(s) 962
BauI CACGAG 2 cut(s) 278, 284
Bbv12I GWGCWC 2 cut(s) 285, 291
BbvCI CCTCAGC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 381, 603, 1150
BccI CCATC 4 cut(s) 160, 229, 935, 1162
BceAI ACGGC 2 cut(s) 38, 167
BcgI CGANNNNNNTGC 2 cut(s) 1156, 1190
BciT130I CCWGG 1 cut(s) 1111
BcnI CCSGG 2 cut(s) 870, 1129
BcoDI GTCTC 2 cut(s) 18, 97
BfaI CTAG 1 cut(s) 1124
BfmI CTRYAG 2 cut(s) 555, 777
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 7 cut(s) 162, 244, 362, 395, 584, 617, 1164
BlsI GCNGC 7 cut(s) 163, 245, 363, 396, 585, 618, 1165
Bme1390I CCNGG 3 cut(s) 870, 1111, 1129
Bme18I GGWCC 1 cut(s) 1140
BmeT110I CYCGRG 2 cut(s) 398, 620
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 1140
BmiI GGNNCC 2 cut(s) 181, 1142
BmrFI CCNGG 3 cut(s) 870, 1111, 1129
BpmI CTGGAG 3 cut(s) 227, 398, 620
Bpu10I CCTNAGC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 2 cut(s) 870, 1129
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 2 cut(s) 531, 753
BsaHI GRCGYC 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 4 cut(s) 52, 306, 869, 1110
BsaWI WCCGGW 1 cut(s) 1003
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 1041, 1212
Bse8I GATNNNNATC 2 cut(s) 531, 753
BseBI CCWGG 1 cut(s) 1111
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 52, 306, 869, 1110
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 2 cut(s) 531, 753
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMI GCAATG 2 cut(s) 1041, 1212
BseMII CTCAG 5 cut(s) 335, 342, 356, 564, 578
BseRI GAGGAG 2 cut(s) 941, 1022
BseXI GCAGC 3 cut(s) 381, 603, 1150
BseYI CCCAGC 2 cut(s) 989, 1082
Bsh1236I CGCG 2 cut(s) 54, 317
BshFI GGCC 3 cut(s) 246, 311, 962
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 285, 291
BsiHKCI CYCGRG 2 cut(s) 398, 620
BsiSI CCGG 4 cut(s) 312, 869, 1004, 1128
BslFI GGGAC 2 cut(s) 129, 1128
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 2 cut(s) 18, 97
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 129, 1128
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 3 cut(s) 246, 311, 962
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 2 cut(s) 398, 620
Bsp1286I GDGCHC 2 cut(s) 285, 291
BspANI GGCC 3 cut(s) 246, 311, 962
BspCNI CTCAG 5 cut(s) 336, 343, 357, 565, 579
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 2 cut(s) 54, 317
BspLI GGNNCC 2 cut(s) 181, 1142
BspQI GCTCTTC 2 cut(s) 513, 735
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 2 cut(s) 1041, 1212
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 52, 306, 869, 1110
BssNI GRCGYC 1 cut(s) 25
BssSI CACGAG 2 cut(s) 278, 284
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 2 cut(s) 278, 284
Bst2UI CCWGG 1 cut(s) 1111
Bst4CI ACNGT 3 cut(s) 202, 472, 694
Bst6I CTCTTC 3 cut(s) 95, 513, 735
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 6 cut(s) 313, 457, 562, 679, 1080, 1161
BstDEI CTNAG 5 cut(s) 344, 351, 365, 573, 587
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 946
BstFNI CGCG 2 cut(s) 54, 317
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 2 cut(s) 317, 343
BstMAI GTCTC 2 cut(s) 18, 97
BstMWI GCNNNNNNNGC 4 cut(s) 17, 221, 230, 347
BstNI CCWGG 1 cut(s) 1111
BstNSI RCATGY 2 cut(s) 935, 1082
BstSCI CCNGG 3 cut(s) 868, 1109, 1127
BstSFI CTRYAG 2 cut(s) 555, 777
BstUI CGCG 2 cut(s) 54, 317
BstV1I GCAGC 3 cut(s) 381, 603, 1150
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 3 cut(s) 246, 311, 962
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 3 cut(s) 179, 248, 1181
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 946
Cac8I GCNNGC 6 cut(s) 313, 457, 562, 679, 1080, 1161
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 2 cut(s) 317, 343
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 1140
Cfr42I CCGCGG 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 14
CviAII CATG 2 cut(s) 932, 1079
DdeI CTNAG 5 cut(s) 344, 351, 365, 573, 587
EaeI YGGCCR 2 cut(s) 244, 960
Eam1104I CTCTTC 3 cut(s) 95, 513, 735
EarI CTCTTC 3 cut(s) 95, 513, 735
EciI GGCGGA 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 1140
Eco57I CTGAAG 3 cut(s) 410, 494, 716
Eco88I CYCGRG 2 cut(s) 398, 620
EcoO109I RGGNCCY 1 cut(s) 1140
EcoRI GAATTC 2 cut(s) 475, 697
EcoRII CCWGG 1 cut(s) 1109
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 935, 1082
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 2 cut(s) 129, 1128
FatI CATG 2 cut(s) 931, 1078
FauI CCCGC 3 cut(s) 25, 464, 686
Fnu4HI GCNGC 7 cut(s) 162, 244, 362, 395, 584, 617, 1164
FokI GGATG 1 cut(s) 953
Fsp4HI GCNGC 7 cut(s) 162, 244, 362, 395, 584, 617, 1164
FspBI CTAG 1 cut(s) 1124
GlaI GCGC 2 cut(s) 316, 342
GluI GCNGC 7 cut(s) 162, 244, 362, 395, 584, 617, 1164
GsaI CCCAGC 2 cut(s) 993, 1086
GsuI CTGGAG 3 cut(s) 227, 398, 620
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 3 cut(s) 246, 311, 962
HapII CCGG 4 cut(s) 312, 869, 1004, 1128
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 317, 343
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 2 cut(s) 935, 1082
Hin6I GCGC 2 cut(s) 315, 341
HinP1I GCGC 2 cut(s) 315, 341
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 2 cut(s) 484, 706
HinfI GANTC 6 cut(s) 355, 413, 577, 607, 635, 894
HpaII CCGG 4 cut(s) 312, 869, 1004, 1128
HphI GGTGA 3 cut(s) 484, 706, 862
Hpy166II GTNNAC 2 cut(s) 820, 1107
Hpy188I TCNGA 4 cut(s) 156, 325, 481, 703
Hpy188III TCNNGA 7 cut(s) 146, 400, 443, 490, 622, 665, 712
Hpy8I GTNNAC 2 cut(s) 820, 1107
Hpy99I CGWCG 2 cut(s) 30, 329
HpyAV CCTTC 3 cut(s) 28, 223, 1054
HpyCH4III ACNGT 3 cut(s) 202, 472, 694
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 531, 564, 753, 950, 1015, 1177
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 221, 230, 347
HpyF3I CTNAG 5 cut(s) 344, 351, 365, 573, 587
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 2 cut(s) 935, 1082
HspAI GCGC 2 cut(s) 315, 341
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
KspI CCGCGG 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 513, 735
LmnI GCTCC 4 cut(s) 179, 379, 601, 928
Lsp1109I GCAGC 3 cut(s) 381, 603, 1150
MaeI CTAG 1 cut(s) 1124
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 850
MbiI CCGCTC 1 cut(s) 161
MboII GAAGA 7 cut(s) 112, 142, 145, 311, 500, 722, 869
MhlI GDGCHC 2 cut(s) 285, 291
MlsI TGGCCA 1 cut(s) 962
MluNI TGGCCA 1 cut(s) 962
MmeI TCCRAC 2 cut(s) 40, 348
Mox20I TGGCCA 1 cut(s) 962
MroNI GCCGGC 1 cut(s) 311
MscI TGGCCA 1 cut(s) 962
MseI TTAA 2 cut(s) 501, 723
Msp20I TGGCCA 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 4 cut(s) 312, 869, 1004, 1128
MspR9I CCNGG 3 cut(s) 870, 1111, 1129
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 1 cut(s) 1111
MvnI CGCG 2 cut(s) 54, 317
MwoI GCNNNNNNNGC 4 cut(s) 17, 221, 230, 347
NaeI GCCGGC 1 cut(s) 313
NciI CCSGG 2 cut(s) 870, 1129
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 2 cut(s) 935, 1082
NlaIV GGNNCC 2 cut(s) 181, 1142
NmuCI GTSAC 1 cut(s) 850
NspI RCATGY 2 cut(s) 935, 1082
PaeI GCATGC 1 cut(s) 1082
PaeR7I CTCGAG 2 cut(s) 398, 620
PciSI GCTCTTC 2 cut(s) 513, 735
PctI GAATGC 1 cut(s) 564
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 6 cut(s) 355, 413, 577, 607, 635, 894
PkrI GCNGC 7 cut(s) 163, 245, 363, 396, 585, 618, 1165
PpuMI RGGWCCY 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 1140
Psp6I CCWGG 1 cut(s) 1109
PspFI CCCAGC 2 cut(s) 989, 1082
PspGI CCWGG 1 cut(s) 1109
PspN4I GGNNCC 2 cut(s) 181, 1142
PspPI GGNCC 1 cut(s) 1140
PspPPI RGGWCCY 1 cut(s) 1140
PstNI CAGNNNCTG 1 cut(s) 388
SacII CCGCGG 1 cut(s) 55
SapI GCTCTTC 2 cut(s) 513, 735
SaqAI TTAA 2 cut(s) 501, 723
SatI GCNGC 7 cut(s) 162, 244, 362, 395, 584, 617, 1164
Sau96I GGNCC 1 cut(s) 1140
ScrFI CCNGG 3 cut(s) 870, 1111, 1129
SduI GDGCHC 2 cut(s) 285, 291
SfcI CTRYAG 2 cut(s) 555, 777
Sfr274I CTCGAG 2 cut(s) 398, 620
Sfr303I CCGCGG 1 cut(s) 55
SgrBI CCGCGG 1 cut(s) 55
SinI GGWCC 1 cut(s) 1140
SlaI CTCGAG 2 cut(s) 398, 620
SmlI CTYRAG 3 cut(s) 398, 611, 620
SmoI CTYRAG 3 cut(s) 398, 611, 620
SphI GCATGC 1 cut(s) 1082
SspMI CTAG 1 cut(s) 1124
StyD4I CCNGG 3 cut(s) 868, 1109, 1127
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 202, 472, 694
TaiI ACGT 1 cut(s) 222
TaqI TCGA 7 cut(s) 117, 258, 399, 568, 621, 897, 977
TauI GCSGC 4 cut(s) 164, 246, 364, 586
TfiI GAWTC 6 cut(s) 355, 413, 577, 607, 635, 894
Tru1I TTAA 2 cut(s) 501, 723
Tru9I TTAA 2 cut(s) 501, 723
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 3 cut(s) 394, 616, 1163
Tsp45I GTSAC 1 cut(s) 850
TspGWI ACGGA 2 cut(s) 192, 869
VpaK11BI GGWCC 1 cut(s) 1140
XapI RAATTY 4 cut(s) 149, 475, 697, 804
XceI RCATGY 2 cut(s) 935, 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XhoI CTCGAG 2 cut(s) 398, 620
XspI CTAG 1 cut(s) 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.