Rw6G031920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013484
Physical Location & Seq
Forward (+)
56028987 .. 56030789
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031920.1

Sequence Viewer

Length: 825 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGAAGGCGATGGAGTGCGGCCACCACCACCTCGACCACCTCCGCCACGAACACGAGCACGAGCACAACCACGAAGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCTCTGGAGCAGAATCTCAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAATTCTGAAAGCTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATCGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGGAATATGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAATGGGTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTATGCCCTGTCCACCTGGGGACTTGCTCTAGCCGGGTTGTATAGGACCCGGGCTGTAATAAGGCTTGCTGCGATGGGGGTGCATACAACAAGCAAAGTGCTTATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.52

Weight (kDa)

5.6

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 4 cut(s) 78, 103, 196, 292
AcoI YGGCCR 2 cut(s) 79, 573
AcsI RAATTY 2 cut(s) 310, 417
AcuI CTGAAG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 2 cut(s) 265, 382
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 722
AluBI AGCT 8 cut(s) 185, 229, 302, 321, 341, 413, 602, 703
AluI AGCT 8 cut(s) 185, 229, 302, 321, 341, 413, 602, 703
Alw21I GWGCWC 2 cut(s) 120, 126
Ama87I CYCGRG 2 cut(s) 233, 756
AoxI GGCC 3 cut(s) 79, 144, 573
ApeKI GCWGC 3 cut(s) 178, 229, 776
ApoI RAATTY 2 cut(s) 310, 417
AspLEI GCGC 2 cut(s) 152, 178
AspS9I GGNCC 1 cut(s) 753
AsuC2I CCSGG 4 cut(s) 483, 742, 757, 758
AsuHPI GGTGA 2 cut(s) 319, 475
AvaI CYCGRG 2 cut(s) 233, 756
AvaII GGWCC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 575
BauI CACGAG 2 cut(s) 113, 119
Bbv12I GWGCWC 2 cut(s) 120, 126
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 165, 216, 763
BccI CCATC 3 cut(s) 64, 548, 775
BceAI ACGGC 1 cut(s) 2
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 724
BcnI CCSGG 4 cut(s) 483, 742, 757, 758
BfaI CTAG 1 cut(s) 737
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 179
BisI GCNGC 5 cut(s) 79, 179, 197, 230, 777
BlsI GCNGC 5 cut(s) 80, 180, 198, 231, 778
Bme1390I CCNGG 5 cut(s) 483, 724, 742, 757, 758
Bme18I GGWCC 1 cut(s) 753
BmeT110I CYCGRG 2 cut(s) 233, 756
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 753
BmiI GGNNCC 2 cut(s) 16, 755
BmrFI CCNGG 5 cut(s) 483, 724, 742, 757, 758
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpmI CTGGAG 2 cut(s) 62, 233
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 4 cut(s) 483, 742, 757, 758
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 141, 482, 723, 756
BsaWI WCCGGW 1 cut(s) 616
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 1 cut(s) 146
Bse3DI GCAATG 2 cut(s) 654, 825
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 4 cut(s) 141, 482, 723, 756
BseGI GGATG 1 cut(s) 559
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 2 cut(s) 654, 825
BseMII CTCAG 2 cut(s) 177, 191
BseRI GAGGAG 2 cut(s) 554, 635
BseXI GCAGC 3 cut(s) 165, 216, 763
BseYI CCCAGC 2 cut(s) 602, 695
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 81, 146, 575
BsiHKAI GWGCWC 2 cut(s) 120, 126
BsiHKCI CYCGRG 2 cut(s) 233, 756
BsiSI CCGG 5 cut(s) 147, 482, 617, 741, 757
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 3 cut(s) 81, 146, 575
BsoBI CYCGRG 2 cut(s) 233, 756
Bsp1286I GDGCHC 2 cut(s) 120, 126
BspACI CCGC 4 cut(s) 78, 103, 196, 292
BspANI GGCC 3 cut(s) 81, 146, 575
BspCNI CTCAG 2 cut(s) 178, 192
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 16, 755
BspQI GCTCTTC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 654, 825
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 141, 482, 723, 756
BssSI CACGAG 2 cut(s) 113, 119
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 2 cut(s) 113, 119
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 37, 307
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 5 cut(s) 148, 183, 292, 693, 774
BstDEI CTNAG 2 cut(s) 186, 200
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 152, 178
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 182
BstNI CCWGG 1 cut(s) 724
BstNSI RCATGY 2 cut(s) 548, 695
BstSCI CCNGG 5 cut(s) 481, 722, 740, 755, 756
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 165, 216, 763
BsuRI GGCC 3 cut(s) 81, 146, 575
BtgZI GCGATG 2 cut(s) 83, 794
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 559
Cac8I GCNNGC 5 cut(s) 148, 183, 292, 693, 774
CfoI GCGC 2 cut(s) 152, 178
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 753
Cfr9I CCCGGG 1 cut(s) 756
CviAII CATG 2 cut(s) 545, 692
DdeI CTNAG 2 cut(s) 186, 200
EaeI YGGCCR 2 cut(s) 79, 573
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 2 cut(s) 233, 756
EcoO109I RGGNCCY 1 cut(s) 753
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 548, 695
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 741
FatI CATG 2 cut(s) 544, 691
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 5 cut(s) 79, 179, 197, 230, 777
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 5 cut(s) 79, 179, 197, 230, 777
FspBI CTAG 1 cut(s) 737
GlaI GCGC 2 cut(s) 151, 177
GluI GCNGC 5 cut(s) 79, 179, 197, 230, 777
GsaI CCCAGC 2 cut(s) 606, 699
GsuI CTGGAG 2 cut(s) 62, 233
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 3 cut(s) 81, 146, 575
HapII CCGG 5 cut(s) 147, 482, 617, 741, 757
HhaI GCGC 2 cut(s) 152, 178
Hin1II CATG 2 cut(s) 548, 695
Hin6I GCGC 2 cut(s) 150, 176
HinP1I GCGC 2 cut(s) 150, 176
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 4 cut(s) 190, 220, 248, 507
HpaII CCGG 5 cut(s) 147, 482, 617, 741, 757
HphI GGTGA 2 cut(s) 319, 475
Hpy166II GTNNAC 2 cut(s) 433, 720
Hpy188I TCNGA 2 cut(s) 160, 316
Hpy188III TCNNGA 4 cut(s) 212, 235, 278, 325
Hpy8I GTNNAC 2 cut(s) 433, 720
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 58, 667
HpyCH4III ACNGT 2 cut(s) 37, 307
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 366, 563, 628, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 182
HpyF3I CTNAG 2 cut(s) 186, 200
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 548, 695
HspAI GCGC 2 cut(s) 150, 176
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 14, 214, 541
Lsp1109I GCAGC 3 cut(s) 165, 216, 763
MaeI CTAG 1 cut(s) 737
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 463
MboII GAAGA 3 cut(s) 146, 335, 482
MhlI GDGCHC 2 cut(s) 120, 126
MlsI TGGCCA 1 cut(s) 575
MluCI AATT 6 cut(s) 167, 310, 333, 417, 633, 665
MluNI TGGCCA 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 575
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 575
MspI CCGG 5 cut(s) 147, 482, 617, 741, 757
MspR9I CCNGG 5 cut(s) 483, 724, 742, 757, 758
MvaI CCWGG 1 cut(s) 724
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 182
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 4 cut(s) 483, 742, 757, 758
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 548, 695
NlaIV GGNNCC 2 cut(s) 16, 755
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 2 cut(s) 548, 695
PaeI GCATGC 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 190, 220, 248, 507
PkrI GCNGC 5 cut(s) 80, 180, 198, 231, 778
PpuMI RGGWCCY 1 cut(s) 753
Psp5II RGGWCCY 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 722
PspFI CCCAGC 2 cut(s) 602, 695
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 2 cut(s) 16, 755
PspPI GGNCC 1 cut(s) 753
PspPPI RGGWCCY 1 cut(s) 753
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 5 cut(s) 79, 179, 197, 230, 777
Sau96I GGNCC 1 cut(s) 753
ScrFI CCNGG 5 cut(s) 483, 724, 742, 757, 758
SduI GDGCHC 2 cut(s) 120, 126
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 753
SlaI CTCGAG 1 cut(s) 233
SmaI CCCGGG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 224, 233
SmoI CTYRAG 2 cut(s) 224, 233
SphI GCATGC 1 cut(s) 695
Sse9I AATT 6 cut(s) 167, 310, 333, 417, 633, 665
SsiI CCGC 4 cut(s) 78, 103, 196, 292
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 5 cut(s) 481, 722, 740, 755, 756
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 37, 307
TaiI ACGT 1 cut(s) 57
TaqI TCGA 4 cut(s) 93, 234, 510, 590
TasI AATT 6 cut(s) 167, 310, 333, 417, 633, 665
TauI GCSGC 2 cut(s) 81, 199
TfiI GAWTC 4 cut(s) 190, 220, 248, 507
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 178, 229, 776
Tsp45I GTSAC 1 cut(s) 463
TspGWI ACGGA 2 cut(s) 27, 482
TspMI CCCGGG 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 753
XapI RAATTY 2 cut(s) 310, 417
XceI RCATGY 2 cut(s) 548, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 233
XmaI CCCGGG 1 cut(s) 756
XspI CTAG 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.