Rh6BG373900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013484
Physical Location & Seq
Forward (+)
60306081 .. 60307888
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG373900.1

Sequence Viewer

Length: 816 bp
ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGACGGCCATGGAGTGCGGCCACCACCACCTCCGCCACGAGCACGAGCACGAGCACAACCACGAAGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCGCTGGAGCAGAACCTGAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTATTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAACTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTCTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACGGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATCGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGGAACATGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAACGGGTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTATGCCTTGTCCACCTGGGGACTTGCTCTAGCCGGGTTGTATAGGACCCGTGCTGTAATAAGGCTTGCTGCGATGGGGGTGCATACAACAAGCAAAGTGCTTATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.14

Weight (kDa)

5.54

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 78, 94, 187, 283
AcoI YGGCCR 3 cut(s) 66, 79, 564
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 2 cut(s) 236, 320
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 2 cut(s) 256, 373
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 713
AluBI AGCT 7 cut(s) 176, 220, 293, 332, 404, 593, 694
AluI AGCT 7 cut(s) 176, 220, 293, 332, 404, 593, 694
Alw21I GWGCWC 3 cut(s) 105, 111, 117
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 4 cut(s) 66, 79, 135, 564
ApeKI GCWGC 3 cut(s) 169, 220, 767
ApoI RAATTY 1 cut(s) 408
AspLEI GCGC 2 cut(s) 143, 169
AspS9I GGNCC 1 cut(s) 744
AsuC2I CCSGG 2 cut(s) 474, 733
AsuHPI GGTGA 2 cut(s) 310, 466
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 744
BalI TGGCCA 1 cut(s) 566
BauI CACGAG 3 cut(s) 98, 104, 110
Bbv12I GWGCWC 3 cut(s) 105, 111, 117
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 156, 207, 754
BccI CCATC 2 cut(s) 539, 766
BceAI ACGGC 2 cut(s) 2, 81
BcgI CGANNNNNNTGC 2 cut(s) 760, 794
BciT130I CCWGG 1 cut(s) 715
BcnI CCSGG 2 cut(s) 474, 733
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 5 cut(s) 79, 170, 188, 221, 768
BlsI GCNGC 5 cut(s) 80, 171, 189, 222, 769
Bme1390I CCNGG 3 cut(s) 474, 715, 733
Bme18I GGWCC 1 cut(s) 744
BmeT110I CYCGRG 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 2 cut(s) 16, 746
BmrFI CCNGG 3 cut(s) 474, 715, 733
BpmI CTGGAG 2 cut(s) 62, 224
Bpu10I CCTNAGC 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 474, 733
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 4 cut(s) 69, 132, 473, 714
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 715
BseDI CCNNGG 4 cut(s) 69, 132, 473, 714
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 2 cut(s) 168, 182
BseRI GAGGAG 2 cut(s) 545, 626
BseXI GCAGC 3 cut(s) 156, 207, 754
BseYI CCCAGC 2 cut(s) 593, 686
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 68, 81, 137, 566
BsiHKAI GWGCWC 3 cut(s) 105, 111, 117
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 138, 473, 608, 732
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 732
BsnI GGCC 4 cut(s) 68, 81, 137, 566
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 105, 111, 117
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 4 cut(s) 78, 94, 187, 283
BspANI GGCC 4 cut(s) 68, 81, 137, 566
BspCNI CTCAG 2 cut(s) 169, 183
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 16, 746
BspQI GCTCTTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 816
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 4 cut(s) 69, 132, 473, 714
BssSI CACGAG 3 cut(s) 98, 104, 110
BssT1I CCWWGG 2 cut(s) 69, 132
Bst2BI CACGAG 3 cut(s) 98, 104, 110
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 2 cut(s) 37, 298
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 5 cut(s) 139, 174, 283, 684, 765
BstDEI CTNAG 2 cut(s) 177, 191
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 2 cut(s) 143, 169
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 173
BstNI CCWGG 1 cut(s) 715
BstNSI RCATGY 2 cut(s) 539, 686
BstSCI CCNGG 3 cut(s) 472, 713, 731
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 156, 207, 754
BsuRI GGCC 4 cut(s) 68, 81, 137, 566
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 785
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 550
Cac8I GCNNGC 5 cut(s) 139, 174, 283, 684, 765
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 2 cut(s) 143, 169
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 744
CviAII CATG 4 cut(s) 70, 536, 601, 683
DdeI CTNAG 2 cut(s) 177, 191
EaeI YGGCCR 3 cut(s) 66, 79, 564
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 69, 132
Eco47I GGWCC 1 cut(s) 744
Eco57I CTGAAG 2 cut(s) 236, 320
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 744
EcoRII CCWGG 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 69, 132
ErhI CCWWGG 2 cut(s) 69, 132
FaeI CATG 4 cut(s) 73, 539, 604, 686
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 732
FatI CATG 4 cut(s) 69, 535, 600, 682
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 5 cut(s) 79, 170, 188, 221, 768
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 5 cut(s) 79, 170, 188, 221, 768
FspBI CTAG 1 cut(s) 728
GlaI GCGC 2 cut(s) 142, 168
GluI GCNGC 5 cut(s) 79, 170, 188, 221, 768
GsaI CCCAGC 2 cut(s) 597, 690
GsuI CTGGAG 2 cut(s) 62, 224
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 4 cut(s) 68, 81, 137, 566
HapII CCGG 4 cut(s) 138, 473, 608, 732
HhaI GCGC 2 cut(s) 143, 169
Hin1II CATG 4 cut(s) 73, 539, 604, 686
Hin6I GCGC 2 cut(s) 141, 167
HinP1I GCGC 2 cut(s) 141, 167
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 181, 239, 498
HpaII CCGG 4 cut(s) 138, 473, 608, 732
HphI GGTGA 2 cut(s) 310, 466
Hpy166II GTNNAC 4 cut(s) 63, 301, 424, 711
Hpy188I TCNGA 2 cut(s) 151, 307
Hpy188III TCNNGA 4 cut(s) 226, 269, 316, 350
Hpy8I GTNNAC 4 cut(s) 63, 301, 424, 711
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 2 cut(s) 37, 298
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 357, 554, 619, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 173
HpyF3I CTNAG 2 cut(s) 177, 191
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 73, 539, 604, 686
HspAI GCGC 2 cut(s) 141, 167
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 14, 205, 532
Lsp1109I GCAGC 3 cut(s) 156, 207, 754
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 454
MboII GAAGA 3 cut(s) 137, 326, 473
MhlI GDGCHC 3 cut(s) 105, 111, 117
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 5 cut(s) 158, 324, 408, 624, 656
MluNI TGGCCA 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 566
MroNI GCCGGC 1 cut(s) 137
MscI TGGCCA 1 cut(s) 566
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 566
MspI CCGG 4 cut(s) 138, 473, 608, 732
MspR9I CCNGG 3 cut(s) 474, 715, 733
MvaI CCWGG 1 cut(s) 715
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 173
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 2 cut(s) 474, 733
NcoI CCATGG 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 73, 539, 604, 686
NlaIV GGNNCC 2 cut(s) 16, 746
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 2 cut(s) 539, 686
PaeI GCATGC 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 181, 239, 498
PkrI GCNGC 5 cut(s) 80, 171, 189, 222, 769
PpuMI RGGWCCY 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 713
PspFI CCCAGC 2 cut(s) 593, 686
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 2 cut(s) 16, 746
PspPI GGNCC 1 cut(s) 744
PspPPI RGGWCCY 1 cut(s) 744
PstNI CAGNNNCTG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 5 cut(s) 79, 170, 188, 221, 768
Sau96I GGNCC 1 cut(s) 744
ScrFI CCNGG 3 cut(s) 474, 715, 733
SduI GDGCHC 3 cut(s) 105, 111, 117
SfcI CTRYAG 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 744
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SphI GCATGC 1 cut(s) 686
Sse9I AATT 5 cut(s) 158, 324, 408, 624, 656
SsiI CCGC 4 cut(s) 78, 94, 187, 283
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 3 cut(s) 472, 713, 731
StyI CCWWGG 2 cut(s) 69, 132
TaaI ACNGT 2 cut(s) 37, 298
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 225, 501, 581
TasI AATT 5 cut(s) 158, 324, 408, 624, 656
TauI GCSGC 2 cut(s) 81, 190
TfiI GAWTC 3 cut(s) 181, 239, 498
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 169, 220, 767
Tsp45I GTSAC 1 cut(s) 454
TspGWI ACGGA 2 cut(s) 27, 473
VpaK11BI GGWCC 1 cut(s) 744
XapI RAATTY 1 cut(s) 408
XceI RCATGY 2 cut(s) 539, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.