FvH4_2g26730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013484
Physical Location & Seq
Forward (+)
21414857 .. 21416910
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26730.t1

Sequence Viewer

Length: 813 bp
ATGGGAGGACACGGAGCTATAGAGGTGGCCAAGACGGTGATCGAGGTTGCTGACGTGGCGTGGAAGGCCATGGAGTGCGTCGAACACTTTCACCACGAACACGAGCACCACCACCACGACGAAGAGCCCAAAGCCGGCGCGATTTCCGACGAGCAACTAGACGCGCTGCGAGCTGAGAATCGGCGGTTGAGGAAGTCGCTAGAGCAGAATCTGAAGCTGCTCGAAAACCTAACGGAATCGCCTTCTTTGCTGAACGATTGCCCTCCTGACTTGTATGCGCGCCTTGTAACTGCGGTGAATTCTGAAAGTTACTTAAAGAGAATTAAAGCGCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCCACAGGGAGTGATTTGGAGGAAGCTGAGATTCTGATCAATGTTGACCAGAACGAGCCAAGTTGGTGGGTGTGGGTGACGGAAGATATGATTCCGGGGAAAGTTGAGGAGAGGAGTGGAATCGACAATGATAGCTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCTGATTTTATGGCTAAGTGTATTATGGCGAATCCGAAAGCTGCGAATTTGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAATGGGTGGTGTAAACAAATTGGAGAAGGTTTTGGGAATTTGGCATGCTGGGAAGCTGTTTTATGCCCTGTCCACCTGGGGACTTGCTCTAGCAGGGTTGTATAGGACCCGTGCTGTTATAAAGCTTGCTGCGATGGGGGTGCATACAACAACCAAAGTGCTCATGAGGGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.09

Weight (kDa)

5.62

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44770 AT1G44770
fragaria_vesca FvH4_2g26730
malus_domestica MD08G1165700.v1.1 MD15G1351500.v1.1
pyrus_communis pycom12654g00110 pycom15g31390
rosa_chinensis RchiOBHm_Chr6g0295611
rosa_laevigata RLG00000011785
rosa_multiflora Rmu_sc0013988.1_g000004
rosa_roxburghii Rroxscaffold_7G00172320
rosa_rugosa Rorug06G0252700 Rorug06G0252800
rosa_samantha Rh6AG365800 Rh6BG373900 Rh6CG380200 Rh6DG366800
rosa_wichuraiana Rw6G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 755
AccII CGCG 3 cut(s) 140, 164, 280
AciI CCGC 2 cut(s) 184, 293
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 3 cut(s) 298, 595, 672
AcuI CTGAAG 2 cut(s) 233, 317
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 370
AjiI CACGTC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 710
AluBI AGCT 8 cut(s) 17, 173, 217, 401, 510, 590, 691, 760
AluI AGCT 8 cut(s) 17, 173, 217, 401, 510, 590, 691, 760
Alw21I GWGCWC 2 cut(s) 108, 798
AlwNI CAGNNNCTG 1 cut(s) 211
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 2 cut(s) 27, 66
ApeKI GCWGC 4 cut(s) 166, 217, 590, 764
ApoI RAATTY 3 cut(s) 298, 595, 672
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 5 cut(s) 140, 166, 280, 282, 331
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 4 cut(s) 49, 83, 307, 463
AvaII GGWCC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 108, 798
BbvI GCAGC 4 cut(s) 153, 204, 577, 751
BccI CCATC 2 cut(s) 536, 763
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BciT130I CCWGG 1 cut(s) 712
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 1 cut(s) 471
BfaI CTAG 3 cut(s) 158, 200, 725
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 4 cut(s) 167, 218, 591, 765
BlsI GCNGC 4 cut(s) 168, 219, 592, 766
Bme1390I CCNGG 2 cut(s) 471, 712
Bme18I GGWCC 1 cut(s) 741
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 2 cut(s) 471, 712
BpuMI CCSGG 1 cut(s) 471
BsaBI GATNNNNATC 2 cut(s) 354, 410
BsaJI CCNNGG 3 cut(s) 69, 470, 711
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 2 cut(s) 642, 813
Bse8I GATNNNNATC 2 cut(s) 354, 410
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 3 cut(s) 69, 470, 711
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 2 cut(s) 354, 410
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 2 cut(s) 642, 813
BseMII CTCAG 2 cut(s) 165, 393
BsePI GCGCGC 1 cut(s) 278
BseRI GAGGAG 4 cut(s) 497, 502, 542, 623
BseXI GCAGC 4 cut(s) 153, 204, 577, 751
BseYI CCCAGC 1 cut(s) 683
Bsh1236I CGCG 3 cut(s) 140, 164, 280
BshFI GGCC 2 cut(s) 29, 68
BsiHKAI GWGCWC 2 cut(s) 108, 798
BsiSI CCGG 3 cut(s) 135, 470, 605
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 2 cut(s) 29, 68
Bsp1286I GDGCHC 3 cut(s) 108, 129, 798
Bsp143I GATC 2 cut(s) 39, 411
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 184, 293
BspANI GGCC 2 cut(s) 29, 68
BspCNI CTCAG 2 cut(s) 166, 394
BspFNI CGCG 3 cut(s) 140, 164, 280
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 1 cut(s) 743
BspQI GCTCTTC 1 cut(s) 117
BsrDI GCAATG 2 cut(s) 642, 813
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 69, 470, 711
BssHII GCGCGC 1 cut(s) 278
BssMI GATC 2 cut(s) 39, 411
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 5 cut(s) 136, 171, 280, 681, 762
BstDEI CTNAG 3 cut(s) 174, 402, 564
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 3 cut(s) 140, 164, 280
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 5 cut(s) 140, 166, 280, 282, 331
BstKTI GATC 2 cut(s) 42, 414
BstMBI GATC 2 cut(s) 39, 411
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 170, 247
BstNI CCWGG 1 cut(s) 712
BstNSI RCATGY 2 cut(s) 536, 683
BstSCI CCNGG 2 cut(s) 469, 710
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 3 cut(s) 140, 164, 280
BstV1I GCAGC 4 cut(s) 153, 204, 577, 751
BstXI CCANNNNNNTGG 1 cut(s) 441
BsuRI GGCC 2 cut(s) 29, 68
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 782
BtrI CACGTC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 547
Cac8I GCNNGC 5 cut(s) 136, 171, 280, 681, 762
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 798
CfoI GCGC 5 cut(s) 140, 166, 280, 282, 331
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 2 cut(s) 67, 170
CviAII CATG 4 cut(s) 70, 533, 680, 799
DdeI CTNAG 3 cut(s) 174, 402, 564
DpnI GATC 2 cut(s) 41, 413
DpnII GATC 2 cut(s) 39, 411
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 741
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 2 cut(s) 233, 317
EcoO109I RGGNCCY 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 73, 536, 683, 802
FaqI GGGAC 1 cut(s) 729
FatI CATG 4 cut(s) 69, 532, 679, 798
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 167, 218, 591, 765
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 167, 218, 591, 765
FspBI CTAG 3 cut(s) 158, 200, 725
GlaI GCGC 5 cut(s) 139, 165, 279, 281, 330
GluI GCNGC 4 cut(s) 167, 218, 591, 765
GsaI CCCAGC 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 29, 68
HapII CCGG 3 cut(s) 135, 470, 605
HgaI GACGC 2 cut(s) 67, 170
HhaI GCGC 5 cut(s) 140, 166, 280, 282, 331
Hin1II CATG 4 cut(s) 73, 536, 683, 802
Hin6I GCGC 5 cut(s) 138, 164, 278, 280, 329
HinP1I GCGC 5 cut(s) 138, 164, 278, 280, 329
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 7 cut(s) 178, 208, 236, 406, 466, 495, 580
HpaII CCGG 3 cut(s) 135, 470, 605
HphI GGTGA 4 cut(s) 49, 83, 307, 463
Hpy166II GTNNAC 3 cut(s) 421, 649, 708
Hpy188I TCNGA 5 cut(s) 148, 213, 304, 411, 585
Hpy188III TCNNGA 2 cut(s) 266, 799
Hpy8I GTNNAC 3 cut(s) 421, 649, 708
Hpy99I CGWCG 3 cut(s) 83, 122, 152
HpyAV CCTTC 3 cut(s) 58, 252, 655
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 354, 616, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 170, 247
HpyF3I CTNAG 3 cut(s) 174, 402, 564
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 73, 536, 683, 802
HspAI GCGC 5 cut(s) 138, 164, 278, 280, 329
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 2 cut(s) 39, 411
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 14, 529
Lsp1109I GCAGC 4 cut(s) 153, 204, 577, 751
MaeI CTAG 3 cut(s) 158, 200, 725
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 286, 308, 451
MalI GATC 2 cut(s) 41, 413
MboI GATC 2 cut(s) 39, 411
MboII GAAGA 2 cut(s) 134, 470
MhlI GDGCHC 3 cut(s) 108, 129, 798
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 6 cut(s) 298, 321, 595, 621, 653, 672
MluNI TGGCCA 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 29
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 29
MseI TTAA 2 cut(s) 314, 324
Msp20I TGGCCA 1 cut(s) 29
MspI CCGG 3 cut(s) 135, 470, 605
MspR9I CCNGG 2 cut(s) 471, 712
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 3 cut(s) 140, 164, 280
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 170, 247
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 471
NcoI CCATGG 1 cut(s) 69
NdeII GATC 2 cut(s) 39, 411
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 4 cut(s) 73, 536, 683, 802
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 2 cut(s) 536, 683
PaeI GCATGC 1 cut(s) 683
PagI TCATGA 1 cut(s) 798
PauI GCGCGC 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 7 cut(s) 178, 208, 236, 406, 466, 495, 580
PkrI GCNGC 4 cut(s) 168, 219, 592, 766
PpuMI RGGWCCY 1 cut(s) 741
PsiI TTATAA 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 710
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 1 cut(s) 741
PspPPI RGGWCCY 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 211
PteI GCGCGC 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 314, 324
SatI GCNGC 4 cut(s) 167, 218, 591, 765
Sau3AI GATC 2 cut(s) 39, 411
Sau96I GGNCC 1 cut(s) 741
ScrFI CCNGG 2 cut(s) 471, 712
SduI GDGCHC 3 cut(s) 108, 129, 798
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 741
SphI GCATGC 1 cut(s) 683
Sse9I AATT 6 cut(s) 298, 321, 595, 621, 653, 672
SsiI CCGC 2 cut(s) 184, 293
SspMI CTAG 3 cut(s) 158, 200, 725
StyD4I CCNGG 2 cut(s) 469, 710
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 57
TaqI TCGA 4 cut(s) 42, 81, 222, 498
TasI AATT 6 cut(s) 298, 321, 595, 621, 653, 672
TfiI GAWTC 7 cut(s) 178, 208, 236, 406, 466, 495, 580
Tru1I TTAA 2 cut(s) 314, 324
Tru9I TTAA 2 cut(s) 314, 324
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 166, 217, 590, 764
Tsp45I GTSAC 1 cut(s) 451
TspGWI ACGGA 3 cut(s) 27, 248, 470
VpaK11BI GGWCC 1 cut(s) 741
XapI RAATTY 3 cut(s) 298, 595, 672
XceI RCATGY 2 cut(s) 536, 683
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 3 cut(s) 158, 200, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.