Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

17326530 .. 17328772

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGATTTGTCGCTTTTGTTGCCAAAACGGAGCTGGGAAATTTCTGGGGGAGCAGATAAAATCAGCAGAGTAGCAATGTCATTGAAGAACATAGTGAAGAACAAATACAAAGCTATTGGTAGAAGAGGGAGGTCACACATTGCACCAGAAGGATCATCTGTGTCTTCTTCTTTATCAACTAATGAAGGTTTAAACCAGAGTATTTGGGTTGATTTGCCTCCAGAGTTACTTCTTGATATAATCCAAAGGATTGAGTCTGAACAGAGTTTATGGCCGGGGAGGAGAGATGTTGTTGCTTGTGCTTCGGTTTGTAAGTCATGGAGGGAGATGACTAAAGAAGTTGTTAAAGTTCCTGAGCTCTCTGGTTTGATCACGTTTCCGATTTCTTTAAGACAGCCTGGACCTAGAGATGCTCCAATTCAATGCTTTATTAAACGTGAAAGAGCTACGGGGATATACCGTCTCTATCTTGGTTTAAGCCCTGCTCTTTCCGGTGACAAGAGTAAGTTGTTGTTATCTGCAAAGAGAGTCAGGAGAGCGACGGGTGCGGAGTTTGTTGTATCGTTATCGGGGAATGACTTCTCGAGAAGTAGTAGTAATTACATAGGAAAACTGAGATCAAATTTCCTGGGAACGAAGTTCACAGTCTACGAAAACCAACCTCCTCCGTTTAACCGAAAGCTCCCACCATCGATGCAAGTGTCTCCATGGGTATCGTCGTCATCTAGTAGTTACAACATAGCTTCAATCTTGTATGAGCTGAATGTTCTGAGAACCAGAGGTCCAAGAAGAATGCAATGTATAATGCACAGTATCCCGATTTCAGCGATTCAAGAAGGCGGCAAAATCCAGTCGCCAACGGAGTTCACAAACCAAGGAAAGAAGAAGAAGAAGCCGCTGATGGATTTCTGCTCAGGGAACCTGGGAGGAGAATCCGTTATAAAAGAACCATTAATTCTGAAAAACAAGTCGCCGAGATGGCACGAACAGCTTCAGTGCTGGTGTCTAAACTTCAAAGGTCGAGTCACAGTCGCCTCGGTGAAAAACTTCCAGCTAGTGGCAGCTGCTGCAGAAGCAGGGAAGAACATGAACATACCAGAAGAGGAACAAGATAGAGTGATATTACAGTTTGGGAAGATAGGCAAAGACATTTTCACAATGGATTATCGTTACCCGATCTCTGCATTCCAAGCTTTTGCTATTTGTTTAAGCAGCTTCGACACGAAGCCAGTCTGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

413

Amino Acids

46.06

Weight (kDa)

9.74

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	68 - 110	5.1e-07	F-box-like
Tub	PF01167	129 - 407	2.7e-100	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	648
AciI	CCGC	3 cut(s)	548, 840, 896
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	39, 622
AcuI	CTGAAG	1 cut(s)	977
AfiI	CCNNNNNNNGG	1 cut(s)	1057
AgsI	TTSAA	5 cut(s)	85, 422, 747, 833, 1015
AjnI	CCWGG	3 cut(s)	397, 627, 921
AloI	GAACNNNNNNTCC	2 cut(s)	766, 798
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	467, 708
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	1067
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	4 cut(s)	1061, 1064, 1067, 1212
ApoI	RAATTY	2 cut(s)	39, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	1008, 1040
AseI	ATTAAT	1 cut(s)	953
Asp700I	GAANNNNTTC	3 cut(s)	578, 990, 1046
AspS9I	GGNCC	2 cut(s)	401, 782
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	506, 1051
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	2 cut(s)	401, 782
BanII	GRGCYC	1 cut(s)	360
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	4 cut(s)	1051, 1054, 1073, 1224
BccI	CCATC	3 cut(s)	697, 895, 972
BciT130I	CCWGG	3 cut(s)	399, 629, 923
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	467, 708
BfaI	CTAG	3 cut(s)	405, 726, 1055
BfmI	CTRYAG	1 cut(s)	1068
BfuI	GTATCC	1 cut(s)	824
BglI	GCCNNNNNGGC	1 cut(s)	979
BisI	GCNGC	6 cut(s)	841, 896, 1062, 1065, 1068, 1213
BlsI	GCNGC	6 cut(s)	842, 897, 1063, 1066, 1069, 1214
Bme1390I	CCNGG	4 cut(s)	276, 399, 629, 923
Bme18I	GGWCC	2 cut(s)	401, 782
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	401, 782
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	4 cut(s)	276, 399, 629, 923
BmsI	GCATC	2 cut(s)	400, 684
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	354, 913
BpuMI	CCSGG	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	692
BsaJI	CCNNGG	6 cut(s)	275, 628, 707, 874, 922, 1035
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	1 cut(s)	1057
Bse1I	ACTGG	2 cut(s)	850, 1229
Bse3DI	GCAATG	3 cut(s)	81, 138, 803
BseBI	CCWGG	3 cut(s)	399, 629, 923
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	6 cut(s)	275, 628, 707, 874, 922, 1035
BseLI	CCNNNNNNNGG	1 cut(s)	1057
BseMI	GCAATG	3 cut(s)	81, 138, 803
BseMII	CTCAG	4 cut(s)	345, 605, 761, 927
BseNI	ACTGG	2 cut(s)	850, 1229
BseRI	GAGGAG	3 cut(s)	295, 654, 942
BseXI	GCAGC	4 cut(s)	1051, 1054, 1073, 1224
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	275, 492
BslI	CCNNNNNNNGG	1 cut(s)	1057
BsmAI	GTCTC	2 cut(s)	467, 708
BsmBI	CGTCTC	1 cut(s)	467
BsmI	GAATGC	2 cut(s)	798, 1184
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	152, 369, 617, 1176
Bsp19I	CCATGG	1 cut(s)	707
BspACI	CCGC	3 cut(s)	548, 840, 896
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	4 cut(s)	346, 606, 762, 926
BspDI	ATCGAT	1 cut(s)	692
BspLI	GGNNCC	1 cut(s)	920
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	1 cut(s)	160
BsrDI	GCAATG	3 cut(s)	81, 138, 803
BsrI	ACTGG	2 cut(s)	850, 1229
BssECI	CCNNGG	6 cut(s)	275, 628, 707, 874, 922, 1035
BssMI	GATC	4 cut(s)	152, 369, 617, 1176
BssT1I	CCWWGG	2 cut(s)	707, 874
Bst2UI	CCWGG	3 cut(s)	399, 629, 923
Bst4CI	ACNGT	5 cut(s)	461, 646, 812, 1030, 1128
Bst6I	CTCTTC	2 cut(s)	118, 1095
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstDEI	CTNAG	4 cut(s)	354, 614, 770, 913
BstDSI	CCRYGG	1 cut(s)	707
BstKTI	GATC	4 cut(s)	155, 372, 620, 1179
BstMAI	GTCTC	2 cut(s)	467, 708
BstMBI	GATC	4 cut(s)	152, 369, 617, 1176
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 545, 979, 988, 1067, 1073, 1190
BstNI	CCWGG	3 cut(s)	399, 629, 923
BstSCI	CCNGG	4 cut(s)	274, 397, 627, 921
BstSFI	CTRYAG	1 cut(s)	1068
BstV1I	GCAGC	4 cut(s)	1051, 1054, 1073, 1224
BstV2I	GAAGAC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	692
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	692
BtgI	CCRYGG	1 cut(s)	707
BtsIMutI	CAGTG	1 cut(s)	1001
CaiI	CAGNNNCTG	1 cut(s)	1067
Cfr13I	GGNCC	2 cut(s)	401, 782
ClaI	ATCGAT	1 cut(s)	692
CviAII	CATG	3 cut(s)	318, 708, 1087
DdeI	CTNAG	4 cut(s)	354, 614, 770, 913
DpnI	GATC	4 cut(s)	154, 371, 619, 1178
DpnII	GATC	4 cut(s)	152, 369, 617, 1176
DraI	TTTAAA	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	118, 1095
EarI	CTCTTC	2 cut(s)	118, 1095
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	707, 874
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	401, 782
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	397, 627, 921
EcoT14I	CCWWGG	2 cut(s)	707, 874
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	2 cut(s)	707, 874
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	3 cut(s)	321, 711, 1090
FatI	CATG	3 cut(s)	317, 707, 1086
FbaI	TGATCA	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	6 cut(s)	841, 896, 1062, 1065, 1068, 1213
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	6 cut(s)	841, 896, 1062, 1065, 1068, 1213
FspBI	CTAG	3 cut(s)	405, 726, 1055
GluI	GCNGC	6 cut(s)	841, 896, 1062, 1065, 1068, 1213
GsaI	CCCAGC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	275, 492
Hin1II	CATG	3 cut(s)	321, 711, 1090
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	5 cut(s)	254, 528, 829, 932, 1023
HpaII	CCGG	2 cut(s)	275, 492
HphI	GGTGA	2 cut(s)	506, 1051
Hpy166II	GTNNAC	3 cut(s)	642, 649, 867
Hpy188I	TCNGA	4 cut(s)	259, 381, 771, 960
Hpy188III	TCNNGA	8 cut(s)	221, 233, 353, 532, 583, 585, 817, 833
Hpy8I	GTNNAC	3 cut(s)	642, 649, 867
Hpy99I	CGWCG	2 cut(s)	544, 721
HpyAV	CCTTC	3 cut(s)	143, 179, 830
HpyCH4III	ACNGT	5 cut(s)	461, 646, 812, 1030, 1128
HpyCH4IV	ACGT	2 cut(s)	374, 436
HpyCH4V	TGCA	7 cut(s)	143, 521, 697, 796, 808, 1070, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 545, 979, 988, 1067, 1073, 1190
HpyF3I	CTNAG	4 cut(s)	354, 614, 770, 913
HpySE526I	ACGT	2 cut(s)	374, 436
Hsp92II	CATG	3 cut(s)	321, 711, 1090
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	152, 369, 617, 1176
LmnI	GCTCC	4 cut(s)	30, 50, 418, 687
Lsp1109I	GCAGC	4 cut(s)	1051, 1054, 1073, 1224
LweI	GCATC	2 cut(s)	400, 684
MaeI	CTAG	3 cut(s)	405, 726, 1055
MaeII	ACGT	2 cut(s)	374, 436
MaeIII	GTNAC	6 cut(s)	132, 225, 494, 731, 1024, 1169
MalI	GATC	4 cut(s)	154, 371, 619, 1178
MboI	GATC	4 cut(s)	152, 369, 617, 1176
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	5 cut(s)	39, 417, 598, 622, 954
MlyI	GAGTC	3 cut(s)	263, 537, 1032
MroXI	GAANNNNTTC	3 cut(s)	578, 990, 1046
MseI	TTAA	8 cut(s)	191, 345, 389, 432, 476, 672, 953, 1208
MspA1I	CMGCKG	2 cut(s)	898, 1064
MspI	CCGG	2 cut(s)	275, 492
MspR9I	CCNGG	4 cut(s)	276, 399, 629, 923
MssI	GTTTAAAC	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	798, 1184
MvaI	CCWGG	3 cut(s)	399, 629, 923
MwoI	GCNNNNNNNGC	7 cut(s)	19, 545, 979, 988, 1067, 1073, 1190
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	707
NdeII	GATC	4 cut(s)	152, 369, 617, 1176
NlaIII	CATG	3 cut(s)	321, 711, 1090
NlaIV	GGNNCC	1 cut(s)	920
NmeAIII	GCCGAG	1 cut(s)	999
NmuCI	GTSAC	3 cut(s)	132, 494, 1024
PaeR7I	CTCGAG	1 cut(s)	583
PctI	GAATGC	2 cut(s)	798, 1184
PdmI	GAANNNNTTC	3 cut(s)	578, 990, 1046
PfeI	GAWTC	2 cut(s)	829, 932
PflMI	CCANNNNNTGG	1 cut(s)	1057
PkrI	GCNGC	6 cut(s)	842, 897, 1063, 1066, 1069, 1214
PleI	GAGTC	3 cut(s)	262, 536, 1031
PmeI	GTTTAAAC	1 cut(s)	192
PpsI	GAGTC	3 cut(s)	262, 536, 1031
PshBI	ATTAAT	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	397, 627, 921
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	3 cut(s)	397, 627, 921
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	2 cut(s)	401, 782
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	1064
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	8 cut(s)	191, 345, 389, 432, 476, 672, 953, 1208
SatI	GCNGC	6 cut(s)	841, 896, 1062, 1065, 1068, 1213
Sau3AI	GATC	4 cut(s)	152, 369, 617, 1176
Sau96I	GGNCC	2 cut(s)	401, 782
SchI	GAGTC	3 cut(s)	263, 537, 1032
ScrFI	CCNGG	4 cut(s)	276, 399, 629, 923
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	400, 684
SfcI	CTRYAG	1 cut(s)	1068
Sfr274I	CTCGAG	1 cut(s)	583
SinI	GGWCC	2 cut(s)	401, 782
SlaI	CTCGAG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	5 cut(s)	39, 417, 598, 622, 954
SsiI	CCGC	3 cut(s)	548, 840, 896
SspMI	CTAG	3 cut(s)	405, 726, 1055
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	274, 397, 627, 921
StyI	CCWWGG	2 cut(s)	707, 874
TaaI	ACNGT	5 cut(s)	461, 646, 812, 1030, 1128
TaiI	ACGT	2 cut(s)	377, 439
TaqI	TCGA	4 cut(s)	584, 692, 1021, 1218
TasI	AATT	5 cut(s)	39, 417, 598, 622, 954
TauI	GCSGC	2 cut(s)	843, 898
TfiI	GAWTC	2 cut(s)	829, 932
Tru1I	TTAA	8 cut(s)	191, 345, 389, 432, 476, 672, 953, 1208
Tru9I	TTAA	8 cut(s)	191, 345, 389, 432, 476, 672, 953, 1208
TscAI	CASTG	1 cut(s)	1001
TseFI	GTSAC	3 cut(s)	132, 494, 1024
TseI	GCWGC	4 cut(s)	1061, 1064, 1067, 1212
Tsp45I	GTSAC	3 cut(s)	132, 494, 1024
TspDTI	ATGAA	2 cut(s)	198, 1103
TspGWI	ACGGA	4 cut(s)	43, 657, 875, 925
TspRI	CASTG	1 cut(s)	1001
Van91I	CCANNNNNTGG	1 cut(s)	1057
VpaK11BI	GGWCC	2 cut(s)	401, 782
VspI	ATTAAT	1 cut(s)	953
XapI	RAATTY	2 cut(s)	39, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	3 cut(s)	578, 990, 1046
XspI	CTAG	3 cut(s)	405, 726, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.