pycom08g02380

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
1752673 .. 1754267
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g02380.2

Sequence Viewer

Length: 1245 bp
ATGCAGTTCAAAAACGTGTTTCACGAGCTACTCGAAATGAGAGATGACAAGGGGAAGAAATCACGAAGAGGAGGGGAAGAGAGGAAGCACACGCGCCGCCGAGCTAAATCTCACATTGCCCCAGAGCATACGTTGTCATCACCTACATCAGTTGAGCAAAGCAAGTGGGCAAACTTGCCCCCAGAGTTGCTTCTTGACATAATCCAACGCGTCGAAGCGAGTGAGACTTCCTGGCCTGCTCGGAGAGATGTGATTGCTTGTGCTTCGGTTTGCAAGTCATGGAGGGAGATTACGAAAGAGATAGTCAAGACTCCAGAGCAATGTGGCTGGCTTACCTTCCCTGTCTCACTCAAGCAGCCGGGACCAAGAGATCATCCGATCCAATGCTTTATTAAGAGGGAAAGAGAAACTTCAACGTATCTACTGTACCTTGGTCTAAGCCCCGCTCTGTGTGGGGATGTGAGTAAGTTATTGCTGGCAGCAAGAAAGGTCAGAAGGGCAACAAGTACACATTTTGTGGTGTCCTTGGCTGCAGATGAATTCTCTCGAGCAAGCAATTCTTACGTTGGAAAATTAAGGTCTAATTTTCTGGGTTCCAAGTTTACCGTTTATGACAGTCAGCCTCCACAAGGCTCAGCAATCCAAACAAATTATTGCTCACATCGAAAGATGAATCCAAAGACGGTATCTCCAAGGATACCTGCTGGTAGCTATAGTGTTGCTACCGTATGTTACGAGCTCAACATCCTCCGAACAAGGGGACCAAGGAGAATGCAGTGCATCATGCAATCAATTCCCGTGTCAGCAGTTCAAGAAGGGGGCGTTGCTCCTACTCCAACAGAGTTAGCGACTTGCCTTCCTCCAAAATGCTGTCCAATGCATGTTTCAAAGGGATCTAAGCAGCTTGCCAACTTGTGCTCTAGTGTCCCCACAACGGATTTGGAGCGAGGCACAAAAGATCCACTCATTTTGAAAAATAAGGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTGAATTTTAAAGGACGCGTTACCGTGGCCTCTGTGAAGAATTTCCAGCTGGTGGCCGGTACAGAGCCATGCCATAATGTTCCATTGGCTGAACAAGAGAGAGTAATACTGCAATTCGGGAAGATCGGTAAAGACATTTTCACAATGGATTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTTGCAGTTTGCTTGAGCAGCTTTGACACAAAACCAGCATGCGAATGA

Protein Analysis

415

Amino Acids

46.4

Weight (kDa)

9.45

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 1069
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 3 cut(s) 94, 210, 1035
AciI CCGC 2 cut(s) 97, 444
AclWI GGATC 3 cut(s) 373, 901, 953
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 3 cut(s) 539, 1021, 1057
AfaI GTAC 3 cut(s) 428, 508, 1078
AfiI CCNNNNNNNGG 4 cut(s) 629, 757, 934, 1069
AflIII ACRYGT 3 cut(s) 15, 208, 1033
AgsI TTSAA 5 cut(s) 10, 414, 812, 888, 973
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AluBI AGCT 8 cut(s) 28, 104, 711, 739, 904, 1003, 1066, 1218
AluI AGCT 8 cut(s) 28, 104, 711, 739, 904, 1003, 1066, 1218
Alw21I GWGCWC 2 cut(s) 741, 920
Alw26I GTCTC 2 cut(s) 218, 349
AlwI GGATC 3 cut(s) 373, 901, 953
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 3 cut(s) 233, 1044, 1071
ApeKI GCWGC 7 cut(s) 355, 479, 530, 901, 1000, 1003, 1215
ApoI RAATTY 3 cut(s) 539, 1021, 1057
Asp700I GAANNNNTTC 1 cut(s) 1058
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 362, 761
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 2 cut(s) 362, 761
BanII GRGCYC 1 cut(s) 741
BauI CACGAG 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 741, 920
BbvI GCAGC 7 cut(s) 367, 491, 517, 913, 990, 1012, 1227
BccI CCATC 1 cut(s) 984
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 218, 349
BfaI CTAG 2 cut(s) 921, 987
BfmI CTRYAG 3 cut(s) 531, 712, 1004
BfuAI ACCTGC 1 cut(s) 709
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 8 cut(s) 97, 356, 480, 531, 902, 1001, 1004, 1216
BlpI GCTNAGC 1 cut(s) 634
BlsI GCNGC 8 cut(s) 98, 357, 481, 532, 903, 1002, 1005, 1217
Bme1390I CCNGG 2 cut(s) 232, 360
Bme18I GGWCC 2 cut(s) 362, 761
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 362, 761
BmiI GGNNCC 4 cut(s) 363, 595, 762, 984
BmrFI CCNGG 2 cut(s) 232, 360
BmsI GCATC 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 297
Bpu1102I GCTNAGC 1 cut(s) 634
BpuEI CTTGAG 2 cut(s) 335, 1231
BpuMI CCSGG 1 cut(s) 360
BsaJI CCNNGG 5 cut(s) 430, 525, 692, 764, 1041
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 4 cut(s) 629, 757, 934, 1069
Bse118I RCCGGY 1 cut(s) 1073
Bse3DI GCAATG 2 cut(s) 114, 326
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 5 cut(s) 430, 525, 692, 764, 1041
BseGI GGATG 3 cut(s) 373, 463, 744
BseLI CCNNNNNNNGG 4 cut(s) 629, 757, 934, 1069
BseMI GCAATG 2 cut(s) 114, 326
BseMII CTCAG 1 cut(s) 648
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 7 cut(s) 367, 491, 517, 913, 990, 1012, 1227
Bsh1236I CGCG 3 cut(s) 94, 210, 1035
BshFI GGCC 3 cut(s) 235, 1046, 1073
BsiHKAI GWGCWC 2 cut(s) 741, 920
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 2 cut(s) 359, 1074
BslFI GGGAC 3 cut(s) 375, 774, 911
BslI CCNNNNNNNGG 4 cut(s) 629, 757, 934, 1069
BsmAI GTCTC 2 cut(s) 218, 349
BsmFI GGGAC 3 cut(s) 375, 774, 911
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 3 cut(s) 235, 1046, 1073
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 741, 920
Bsp143I GATC 5 cut(s) 370, 378, 893, 958, 1140
Bsp1720I GCTNAGC 1 cut(s) 634
BspACI CCGC 2 cut(s) 97, 444
BspANI GGCC 3 cut(s) 235, 1046, 1073
BspCNI CTCAG 1 cut(s) 647
BspFNI CGCG 3 cut(s) 94, 210, 1035
BspLI GGNNCC 4 cut(s) 363, 595, 762, 984
BspMAI CTGCAG 2 cut(s) 535, 1008
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 3 cut(s) 373, 901, 953
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 114, 326
BsrFI RCCGGY 1 cut(s) 1073
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 5 cut(s) 430, 525, 692, 764, 1041
BssMI GATC 5 cut(s) 370, 378, 893, 958, 1140
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 4 cut(s) 430, 525, 692, 764
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 6 cut(s) 426, 607, 617, 685, 727, 1042
Bst6I CTCTTC 2 cut(s) 61, 72
BstC8I GCNNGC 6 cut(s) 237, 329, 477, 553, 906, 1237
BstDEI CTNAG 3 cut(s) 437, 634, 897
BstDSI CCRYGG 1 cut(s) 1041
BstENI CCTNNNNNAGG 1 cut(s) 627
BstF5I GGATG 3 cut(s) 373, 463, 744
BstFNI CGCG 3 cut(s) 94, 210, 1035
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 373, 381, 896, 961, 1143
BstMAI GTCTC 2 cut(s) 218, 349
BstMBI GATC 5 cut(s) 370, 378, 893, 958, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 1000, 1193, 1215
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 884, 1239
BstSCI CCNGG 2 cut(s) 230, 358
BstSFI CTRYAG 3 cut(s) 531, 712, 1004
BstUI CGCG 3 cut(s) 94, 210, 1035
BstV1I GCAGC 7 cut(s) 367, 491, 517, 913, 990, 1012, 1227
BstX2I RGATCY 2 cut(s) 893, 958
BstYI RGATCY 2 cut(s) 893, 958
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 3 cut(s) 235, 1046, 1073
BtgI CCRYGG 1 cut(s) 1041
BtsCI GGATG 3 cut(s) 373, 463, 744
BtsI GCAGTG 2 cut(s) 782, 1013
BtsIMutI CAGTG 2 cut(s) 782, 1013
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 6 cut(s) 237, 329, 477, 553, 906, 1237
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 1073
Cfr13I GGNCC 2 cut(s) 362, 761
CseI GACGC 2 cut(s) 199, 1041
Csp6I GTAC 3 cut(s) 427, 507, 1077
CspCI CAANNNNNGTGG 4 cut(s) 146, 181, 951, 986
CviAII CATG 6 cut(s) 279, 784, 881, 995, 1086, 1236
CviQI GTAC 3 cut(s) 427, 507, 1077
DdeI CTNAG 3 cut(s) 437, 634, 897
DpnI GATC 5 cut(s) 372, 380, 895, 960, 1142
DpnII GATC 5 cut(s) 370, 378, 893, 958, 1140
DraI TTTAAA 1 cut(s) 1027
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 61, 72
EarI CTCTTC 2 cut(s) 61, 72
Ecl136II GAGCTC 1 cut(s) 739
Eco130I CCWWGG 4 cut(s) 430, 525, 692, 764
Eco24I GRGCYC 1 cut(s) 741
Eco47I GGWCC 2 cut(s) 362, 761
Eco53kI GAGCTC 1 cut(s) 739
Eco88I CYCGRG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 739
EcoNI CCTNNNNNAGG 1 cut(s) 627
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 4 cut(s) 430, 525, 692, 764
EcoT22I ATGCAT 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 4 cut(s) 430, 525, 692, 764
FaeI CATG 6 cut(s) 282, 787, 884, 998, 1089, 1239
FalI AAGNNNNNCTT 4 cut(s) 394, 426, 544, 576
FaqI GGGAC 3 cut(s) 375, 774, 911
FatI CATG 6 cut(s) 278, 783, 880, 994, 1085, 1235
FauI CCCGC 1 cut(s) 451
Fnu4HI GCNGC 8 cut(s) 97, 356, 480, 531, 902, 1001, 1004, 1216
FokI GGATG 3 cut(s) 360, 470, 731
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 8 cut(s) 97, 356, 480, 531, 902, 1001, 1004, 1216
FspBI CTAG 2 cut(s) 921, 987
GlaI GCGC 1 cut(s) 95
GluI GCNGC 8 cut(s) 97, 356, 480, 531, 902, 1001, 1004, 1216
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 235, 1046, 1073
HapII CCGG 2 cut(s) 359, 1074
HgaI GACGC 2 cut(s) 199, 1041
HhaI GCGC 1 cut(s) 96
Hin1II CATG 6 cut(s) 282, 787, 884, 998, 1089, 1239
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 310, 673
HpaII CCGG 2 cut(s) 359, 1074
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 509, 603
Hpy188I TCNGA 5 cut(s) 243, 378, 494, 752, 1020
Hpy188III TCNNGA 8 cut(s) 23, 63, 194, 307, 314, 546, 812, 1135
Hpy8I GTNNAC 2 cut(s) 509, 603
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 4 cut(s) 346, 489, 809, 866
HpyCH4III ACNGT 6 cut(s) 426, 607, 617, 685, 727, 1042
HpyCH4IV ACGT 4 cut(s) 15, 131, 416, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 1000, 1193, 1215
HpyF3I CTNAG 3 cut(s) 437, 634, 897
HpySE526I ACGT 4 cut(s) 15, 131, 416, 564
Hsp92II CATG 6 cut(s) 282, 787, 884, 998, 1089, 1239
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 5 cut(s) 370, 378, 893, 958, 1140
LmnI GCTCC 3 cut(s) 832, 943, 988
Lsp1109I GCAGC 7 cut(s) 367, 491, 517, 913, 990, 1012, 1227
LweI GCATC 1 cut(s) 789
MaeI CTAG 2 cut(s) 921, 987
MaeII ACGT 4 cut(s) 15, 131, 416, 564
MaeIII GTNAC 2 cut(s) 731, 1036
MalI GATC 5 cut(s) 372, 380, 895, 960, 1142
MbiI CCGCTC 1 cut(s) 446
MboI GATC 5 cut(s) 370, 378, 893, 958, 1140
MboII GAAGA 5 cut(s) 67, 78, 89, 1066, 1150
MflI RGATCY 2 cut(s) 893, 958
MhlI GDGCHC 2 cut(s) 741, 920
MluCI AATT 9 cut(s) 539, 556, 572, 583, 649, 792, 1021, 1057, 1130
MluI ACGCGT 2 cut(s) 208, 1033
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 3 cut(s) 229, 547, 860
Mph1103I ATGCAT 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 1058
MseI TTAA 3 cut(s) 393, 575, 1026
MslI CAYNNNNRTG 1 cut(s) 1240
MspA1I CMGCKG 2 cut(s) 1003, 1066
MspI CCGG 2 cut(s) 359, 1074
MspR9I CCNGG 2 cut(s) 232, 360
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 3 cut(s) 94, 210, 1035
MwoI GCNNNNNNNGC 3 cut(s) 1000, 1193, 1215
NciI CCSGG 1 cut(s) 360
NdeII GATC 5 cut(s) 370, 378, 893, 958, 1140
NlaIII CATG 6 cut(s) 282, 787, 884, 998, 1089, 1239
NlaIV GGNNCC 4 cut(s) 363, 595, 762, 984
NmeAIII GCCGAG 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 2 cut(s) 884, 1239
PaeI GCATGC 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 30
PctI GAATGC 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 1058
PfeI GAWTC 1 cut(s) 673
PflMI CCANNNNNTGG 1 cut(s) 1069
PkrI GCNGC 8 cut(s) 98, 357, 481, 532, 903, 1002, 1005, 1217
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 4 cut(s) 363, 595, 762, 984
PspPI GGNCC 2 cut(s) 362, 761
PstI CTGCAG 2 cut(s) 535, 1008
PsuI RGATCY 2 cut(s) 893, 958
PvuII CAGCTG 2 cut(s) 1003, 1066
RsaI GTAC 3 cut(s) 428, 508, 1078
RsaNI GTAC 3 cut(s) 427, 507, 1077
RseI CAYNNNNRTG 1 cut(s) 1240
SacI GAGCTC 1 cut(s) 741
SaqAI TTAA 3 cut(s) 393, 575, 1026
SatI GCNGC 8 cut(s) 97, 356, 480, 531, 902, 1001, 1004, 1216
Sau3AI GATC 5 cut(s) 370, 378, 893, 958, 1140
Sau96I GGNCC 2 cut(s) 362, 761
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 232, 360
SduI GDGCHC 2 cut(s) 741, 920
SfaNI GCATC 1 cut(s) 789
SfcI CTRYAG 3 cut(s) 531, 712, 1004
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 362, 761
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 1240
SmlI CTYRAG 3 cut(s) 350, 546, 1210
SmoI CTYRAG 3 cut(s) 350, 546, 1210
SphI GCATGC 1 cut(s) 1239
Sse9I AATT 9 cut(s) 539, 556, 572, 583, 649, 792, 1021, 1057, 1130
SsiI CCGC 2 cut(s) 97, 444
SspMI CTAG 2 cut(s) 921, 987
SstI GAGCTC 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 230, 358
StyI CCWWGG 4 cut(s) 430, 525, 692, 764
TaaI ACNGT 6 cut(s) 426, 607, 617, 685, 727, 1042
TaiI ACGT 4 cut(s) 18, 134, 419, 567
TaqI TCGA 4 cut(s) 33, 213, 547, 664
TasI AATT 9 cut(s) 539, 556, 572, 583, 649, 792, 1021, 1057, 1130
TatI WGTACW 1 cut(s) 506
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 3 cut(s) 393, 575, 1026
Tru9I TTAA 3 cut(s) 393, 575, 1026
TscAI CASTG 2 cut(s) 782, 1013
TseI GCWGC 7 cut(s) 355, 479, 530, 901, 1000, 1003, 1215
TspDTI ATGAA 2 cut(s) 552, 686
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 2 cut(s) 782, 1013
Van91I CCANNNNNTGG 1 cut(s) 1069
VpaK11BI GGWCC 2 cut(s) 362, 761
XagI CCTNNNNNAGG 1 cut(s) 627
XapI RAATTY 3 cut(s) 539, 1021, 1057
XceI RCATGY 2 cut(s) 884, 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 1058
XspI CTAG 2 cut(s) 921, 987
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.