Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

1486862 .. 1488899

Gene Structure 2038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1025400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCAATTCAGAAACGTGTTTCACGAGCTATTCGAGATGAGAGATGACAAGGGGAAGAAATCAAGAAGAGGAGGGGAAGAGAGGAAGCACACGCGCCGCCGTGCGAAATCTCACATTGCCCCGGAACATACATTGTCATCACCTGCATCAGTTGAGCAAACCAAGTGGGCAAACTTGCCCCCGGAGTTGCTTCTCGACATAATCCAACGCGTTGAAGCGAGTGAGACTTCCTGGCCTGCTCGGAGGGATGTGATTGCTTGCGCTTCGGTTTGCAAGTCGTGGAGGGAGATTACGAAAGGGATCGTCAAGACTCCAGAGCAATGTGGCTGGCTTACCTTCCCTGTCTCACTCAAGCAGCCGGGACCAAGAGATCATCCGATCCAGTGCTTTATTAAGAGGGAAAGAGAAACTTCAACATTCCTACTGTATCTTGGTCTTAGCCCTGCTCTGTGTGGGGACGTGAGTAAGTTATTGCTGGCAGCAAGGAAGGTCAGACGGGCAACAAGCACACATTTTGTTGTGTCCTTGGCCGCAGATGAATTCTCTCGAGCAAGCATTACTTATGTTGGACAATTGAGGCAAGCTTTACTATGCATCTTTATCGTTGCCACGATTTTTTTCAATTTGTCTAATTTTCTGGGATCCAAGTTTACCGTTTATGACAGTCAGCCTCCACAGGACTCAGCAATCCAAACAAATTATCAGTCACATCGAAAAATCAATCCAAAGAAGGTATCTCCAAGGATGACTGCTGGTAGCTATAGTGTTGCTACTGTATCGTACGAGCTCAATATCCTCCGAACAAGGGGACCAAGGAGAATGCAATGCATCATGCAATCAATCCCCATGTCAGCAGTTCAAGAAGGGGGCGTTGCTCCTACTCCAACAGAGTTAGCGACCTGCCTTCCTCCAAAATGCTGTGCATTGCAAGTTTCAAAGGGATCGAAGCAGCTTGCCAACTTTTGCTCTAGTGACCCCACAACGGATTTGGAACAAGGCACAAAAGATCCGGTCATTTTGAAAAACAAAGCTCCTAGATGGCACGAGCAGCTGCAGTGTTGGTGTCTGAATTTTAAGGGACGCGTTACAGTGGCCTCTGTGAAGAATTTCCAGCTGGTGGCCGCTGCAGAGCCTTGCCATAATGTTCCATTGGCTGAAGAAGAGAAAGTAATACTGCAATTCGGGAAGATTGGTAAAGACATTTTCACAATGGACTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTCGCAATTTGCTTGAGCAGCTTTGACACGAAACCAGCCTGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

431

Amino Acids

48.23

Weight (kDa)

9.36

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	56 - 98	4e-07	F-box-like
Tub	PF01167	117 - 425	6.4e-92	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	2 cut(s)	151, 908
AccB7I	CCANNNNNTGG	1 cut(s)	1117
AccII	CGCG	3 cut(s)	94, 210, 1083
AciI	CCGC	3 cut(s)	97, 531, 1122
AclWI	GGATC	6 cut(s)	308, 373, 636, 649, 949, 1001
AcoI	YGGCCR	2 cut(s)	528, 1119
AcsI	RAATTY	3 cut(s)	539, 1069, 1105
AcuI	CTGAAG	1 cut(s)	1176
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	3 cut(s)	805, 982, 1117
AflIII	ACRYGT	3 cut(s)	15, 208, 1081
AgsI	TTSAA	6 cut(s)	215, 414, 622, 860, 936, 1021
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	9 cut(s)	28, 584, 759, 787, 952, 1031, 1051, 1114, 1266
AluI	AGCT	9 cut(s)	28, 584, 759, 787, 952, 1031, 1051, 1114, 1266
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	2 cut(s)	218, 349
AlwI	GGATC	6 cut(s)	308, 373, 636, 649, 949, 1001
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	4 cut(s)	233, 528, 1092, 1119
ApeKI	GCWGC	7 cut(s)	355, 479, 949, 1048, 1051, 1124, 1263
ApoI	RAATTY	3 cut(s)	539, 1069, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
Asp700I	GAANNNNTTC	1 cut(s)	1106
AspLEI	GCGC	2 cut(s)	96, 263
AspS9I	GGNCC	2 cut(s)	362, 809
AsuC2I	CCSGG	3 cut(s)	122, 182, 360
AsuHPI	GGTGA	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	2 cut(s)	362, 809
BamHI	GGATCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	789
BauI	CACGAG	2 cut(s)	23, 1043
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	7 cut(s)	367, 491, 961, 1038, 1060, 1111, 1275
BccI	CCATC	1 cut(s)	1032
BceAI	ACGGC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	122, 182, 360
BcoDI	GTCTC	2 cut(s)	218, 349
BfaI	CTAG	2 cut(s)	969, 1035
BfmI	CTRYAG	3 cut(s)	760, 1052, 1125
BfuAI	ACCTGC	2 cut(s)	151, 908
Bme1390I	CCNGG	4 cut(s)	122, 182, 232, 360
Bme18I	GGWCC	2 cut(s)	362, 809
BmeT110I	CYCGRG	1 cut(s)	546
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	362, 809
BmiI	GGNNCC	3 cut(s)	363, 643, 810
BmrFI	CCNGG	4 cut(s)	122, 182, 232, 360
BmsI	GCATC	3 cut(s)	155, 603, 837
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	335, 1279
BpuMI	CCSGG	3 cut(s)	122, 182, 360
BsaJI	CCNNGG	5 cut(s)	120, 180, 525, 740, 812
BsaWI	WCCGGW	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	805, 982, 1117
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	4 cut(s)	114, 326, 830, 923
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	5 cut(s)	120, 180, 525, 740, 812
BseGI	GGATG	3 cut(s)	253, 373, 750
BseLI	CCNNNNNNNGG	3 cut(s)	805, 982, 1117
BseMI	GCAATG	4 cut(s)	114, 326, 830, 923
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	7 cut(s)	367, 491, 961, 1038, 1060, 1111, 1275
Bsh1236I	CGCG	3 cut(s)	94, 210, 1083
BshFI	GGCC	4 cut(s)	235, 530, 1094, 1121
BsiHKAI	GWGCWC	1 cut(s)	789
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	122, 182, 359, 1010
BsiWI	CGTACG	1 cut(s)	780
BslFI	GGGAC	4 cut(s)	375, 470, 822, 1092
BslI	CCNNNNNNNGG	3 cut(s)	805, 982, 1117
BsmAI	GTCTC	2 cut(s)	218, 349
BsmFI	GGGAC	4 cut(s)	375, 470, 822, 1092
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	4 cut(s)	235, 530, 1094, 1121
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
BspACI	CCGC	3 cut(s)	97, 531, 1122
BspANI	GGCC	4 cut(s)	235, 530, 1094, 1121
BspCNI	CTCAG	1 cut(s)	695
BspFNI	CGCG	3 cut(s)	94, 210, 1083
BspLI	GGNNCC	3 cut(s)	363, 643, 810
BspMAI	CTGCAG	2 cut(s)	1056, 1129
BspMI	ACCTGC	2 cut(s)	151, 908
BspPI	GGATC	6 cut(s)	308, 373, 636, 649, 949, 1001
BsrDI	GCAATG	4 cut(s)	114, 326, 830, 923
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	5 cut(s)	120, 180, 525, 740, 812
BssMI	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
BssSI	CACGAG	2 cut(s)	23, 1043
BssT1I	CCWWGG	3 cut(s)	525, 740, 812
Bst2BI	CACGAG	2 cut(s)	23, 1043
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	5 cut(s)	426, 655, 665, 775, 1090
Bst6I	CTCTTC	3 cut(s)	61, 72, 1155
BstC8I	GCNNGC	8 cut(s)	237, 259, 329, 477, 553, 582, 954, 1285
BstDEI	CTNAG	2 cut(s)	437, 682
BstF5I	GGATG	3 cut(s)	253, 373, 750
BstFNI	CGCG	3 cut(s)	94, 210, 1083
BstHHI	GCGC	2 cut(s)	96, 263
BstKTI	GATC	6 cut(s)	303, 373, 381, 644, 944, 1009
BstMAI	GTCTC	2 cut(s)	218, 349
BstMBI	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	1048, 1241, 1263
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	120, 180, 230, 358
BstSFI	CTRYAG	3 cut(s)	760, 1052, 1125
BstUI	CGCG	3 cut(s)	94, 210, 1083
BstV1I	GCAGC	7 cut(s)	367, 491, 961, 1038, 1060, 1111, 1275
BstX2I	RGATCY	2 cut(s)	641, 1006
BstYI	RGATCY	2 cut(s)	641, 1006
BsuRI	GGCC	4 cut(s)	235, 530, 1094, 1121
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	253, 373, 750
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	3 cut(s)	389, 1061, 1095
BveI	ACCTGC	2 cut(s)	151, 908
Cac8I	GCNNGC	8 cut(s)	237, 259, 329, 477, 553, 582, 954, 1285
CfoI	GCGC	2 cut(s)	96, 263
Cfr13I	GGNCC	2 cut(s)	362, 809
CseI	GACGC	1 cut(s)	1089
Csp6I	GTAC	1 cut(s)	781
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	2 cut(s)	832, 847
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	2 cut(s)	437, 682
DpnI	GATC	6 cut(s)	302, 372, 380, 643, 943, 1008
DpnII	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
EaeI	YGGCCR	2 cut(s)	528, 1119
Eam1104I	CTCTTC	3 cut(s)	61, 72, 1155
EarI	CTCTTC	3 cut(s)	61, 72, 1155
Ecl136II	GAGCTC	1 cut(s)	787
Eco130I	CCWWGG	3 cut(s)	525, 740, 812
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	2 cut(s)	362, 809
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	1176
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	787
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	3 cut(s)	525, 740, 812
EcoT22I	ATGCAT	2 cut(s)	596, 830
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	3 cut(s)	525, 740, 812
FaeI	CATG	2 cut(s)	835, 850
FaiI	YATR	9 cut(s)	129, 200, 564, 592, 660, 762, 833, 848, 1140
FalI	AAGNNNNNCTT	4 cut(s)	394, 426, 544, 576
FaqI	GGGAC	4 cut(s)	375, 470, 822, 1092
FatI	CATG	2 cut(s)	831, 846
FokI	GGATG	3 cut(s)	260, 360, 757
FriOI	GRGCYC	1 cut(s)	789
FspBI	CTAG	2 cut(s)	969, 1035
GlaI	GCGC	2 cut(s)	95, 262
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	235, 530, 1094, 1121
HapII	CCGG	4 cut(s)	122, 182, 359, 1010
HgaI	GACGC	1 cut(s)	1089
HhaI	GCGC	2 cut(s)	96, 263
Hin1II	CATG	2 cut(s)	835, 850
Hin6I	GCGC	2 cut(s)	94, 261
HinP1I	GCGC	2 cut(s)	94, 261
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	2 cut(s)	310, 680
HpaII	CCGG	4 cut(s)	122, 182, 359, 1010
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	6 cut(s)	11, 243, 378, 494, 800, 1068
Hpy188III	TCNNGA	9 cut(s)	23, 34, 63, 194, 307, 314, 546, 860, 1183
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	6 cut(s)	346, 481, 724, 857, 914, 1255
HpyCH4III	ACNGT	5 cut(s)	426, 655, 665, 775, 1090
HpyCH4IV	ACGT	2 cut(s)	15, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1048, 1241, 1263
HpyF3I	CTNAG	2 cut(s)	437, 682
HpySE526I	ACGT	2 cut(s)	15, 459
Hsp92II	CATG	2 cut(s)	835, 850
HspAI	GCGC	2 cut(s)	94, 261
Kzo9I	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
LmnI	GCTCC	2 cut(s)	880, 1036
Lsp1109I	GCAGC	7 cut(s)	367, 491, 961, 1038, 1060, 1111, 1275
LweI	GCATC	3 cut(s)	155, 603, 837
MaeI	CTAG	2 cut(s)	969, 1035
MaeII	ACGT	2 cut(s)	15, 459
MaeIII	GTNAC	3 cut(s)	705, 971, 1084
MalI	GATC	6 cut(s)	302, 372, 380, 643, 943, 1008
MboI	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
MboII	GAAGA	7 cut(s)	67, 78, 89, 1114, 1169, 1172, 1198
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	2 cut(s)	641, 1006
MhlI	GDGCHC	1 cut(s)	789
MluI	ACGCGT	2 cut(s)	208, 1081
MlyI	GAGTC	2 cut(s)	304, 674
MmeI	TCCRAC	3 cut(s)	229, 547, 908
Mph1103I	ATGCAT	2 cut(s)	596, 830
MroXI	GAANNNNTTC	1 cut(s)	1106
MseI	TTAA	2 cut(s)	393, 1074
MspA1I	CMGCKG	3 cut(s)	1051, 1114, 1124
MspI	CCGG	4 cut(s)	122, 182, 359, 1010
MspR9I	CCNGG	4 cut(s)	122, 182, 232, 360
MunI	CAATTG	1 cut(s)	572
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	3 cut(s)	94, 210, 1083
MwoI	GCNNNNNNNGC	3 cut(s)	1048, 1241, 1263
NciI	CCSGG	3 cut(s)	122, 182, 360
NdeII	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
NlaIII	CATG	2 cut(s)	835, 850
NlaIV	GGNNCC	3 cut(s)	363, 643, 810
NmuCI	GTSAC	2 cut(s)	705, 971
NsiI	ATGCAT	2 cut(s)	596, 830
PaeR7I	CTCGAG	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 30
PctI	GAATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	1106
Pfl23II	CGTACG	1 cut(s)	780
PflMI	CCANNNNNTGG	1 cut(s)	1117
PleI	GAGTC	2 cut(s)	304, 674
PpsI	GAGTC	2 cut(s)	304, 674
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspLI	CGTACG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	363, 643, 810
PspPI	GGNCC	2 cut(s)	362, 809
PstI	CTGCAG	2 cut(s)	1056, 1129
PsuI	RGATCY	2 cut(s)	641, 1006
PvuII	CAGCTG	2 cut(s)	1051, 1114
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	2 cut(s)	393, 1074
Sau3AI	GATC	6 cut(s)	300, 370, 378, 641, 941, 1006
Sau96I	GGNCC	2 cut(s)	362, 809
SchI	GAGTC	2 cut(s)	304, 674
ScrFI	CCNGG	4 cut(s)	122, 182, 232, 360
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	3 cut(s)	155, 603, 837
SfcI	CTRYAG	3 cut(s)	760, 1052, 1125
Sfr274I	CTCGAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	362, 809
SlaI	CTCGAG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	350, 546, 1258
SmoI	CTYRAG	3 cut(s)	350, 546, 1258
SsiI	CCGC	3 cut(s)	97, 531, 1122
SspMI	CTAG	2 cut(s)	969, 1035
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	4 cut(s)	120, 180, 230, 358
StyI	CCWWGG	3 cut(s)	525, 740, 812
TaaI	ACNGT	5 cut(s)	426, 655, 665, 775, 1090
TaiI	ACGT	2 cut(s)	18, 462
TaqI	TCGA	5 cut(s)	33, 195, 547, 712, 944
TauI	GCSGC	3 cut(s)	99, 533, 1124
Tru1I	TTAA	2 cut(s)	393, 1074
Tru9I	TTAA	2 cut(s)	393, 1074
TscAI	CASTG	3 cut(s)	389, 1061, 1095
TseFI	GTSAC	2 cut(s)	705, 971
TseI	GCWGC	7 cut(s)	355, 479, 949, 1048, 1051, 1124, 1263
Tsp45I	GTSAC	2 cut(s)	705, 971
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	3 cut(s)	389, 1061, 1095
Van91I	CCANNNNNTGG	1 cut(s)	1117
VpaK11BI	GGWCC	2 cut(s)	362, 809
XapI	RAATTY	3 cut(s)	539, 1069, 1105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XhoI	CTCGAG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	1106
XspI	CTAG	2 cut(s)	969, 1035
Zsp2I	ATGCAT	2 cut(s)	596, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.