Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

34168773 .. 34172431

Gene Structure 3659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCACTCAAAAAAATATTTCACGAGCTACTGGAGCTCAGAGATGACATGGGGAAAAAATCAAGAAGGGCAGAGAGAAAGCATACGCGTCGCCGAGCAAAATCACACATTGCCCCTGAACAGTCATTATCTTCATTGCCATCACCTGAATTGGTTCAACAGAGCCAATGGGCAAACTTGCCCCCCGAGTTGCTTCTTGACATAATTCAACGCTTGGAAGCGAGCGAGACCTCCTGGCCTGCTCGGAGAGATGTCGTTGCCTGTGCTTCGGTTTGCAGGTCATGGAGGGAGATTACAAAAGAGATAGTCAAGACTCCAGAGCAATGTGGCTGGCTTACCTTCCCTATCTCACTGAAGCAGCCGGGTCCAAGAGATGCTCCGATCCAGTGCTTTATTAAGAGGGAAAGAGAAACCTCGACATATCGACTGTATCTTGGTCTAAGCCCTGCTCTGTCTGGGGACATGAGTAAGCTATTGCTGGCAGCGAGAAAGATCAGACGGGCAACTAGTACAGGTTTTGTGATATCTTTGGTTGCAGATGAATTTTCTCGAGCAAGCAATACCTATGTTGGAAAACTAAGGTCTAATTTTCTGGGGTCCAAGTTTACCATTTATGACAGTCAGCCTCCACAAAACCCAGCAATCCAAACAAATTGTAGGTCACATCGCAGAATCAATTCAAAGCAGGTATCTCCAAGGGTACCTGCCGGCTGTTTTAGTGTTGCTTCTGTATCTTATGAACTCAATATCCTCCGAACAAGGGGCCCAAGGAGAATGCAATGCACCATGCAATCAATCCCCATAACAGCAGTTCAAGAAGGGGGCTTTGCTCCAACTCCAACAGAGTTATCAACTTGCTTAAACCAGAAATGCTCTCCATTGTCCACTTCGCAAGGGAAGAAGCCACTTGCTAACTTGGGCTCTAGTAGTACCACACTGGATTTGGAACATGGCATGAAGGATCCGCTCATTTTGAAAAATAAATCCCCTCGATGGCATGAACAGCTGCAGTGTTGGTGTCTAAACTTTAAGGGTCGTGTTACAGTGGCATCCGTGAAGAATTTCCAGCTGGTGGCTTCTGCAGAGCCTTGCCAAAATGTTTCATTGGCTGAACAAGAGAAAGTAATCCTGCAATTCGGGAAGATCGGTAAAGACATTTTCACTATGGATTATCGCTACCCTCTCTCTGCTTTCCAAGCTTTCGCAATTTGCTTGAGCAGCTTTGACACGAAACCAGCCTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

416

Amino Acids

46.58

Weight (kDa)

9.65

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	267, 676, 712
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	700
AccB7I	CCANNNNNTGG	1 cut(s)	1072
AccBSI	CCGCTC	1 cut(s)	967
AccII	CGCG	1 cut(s)	88
AciI	CCGC	1 cut(s)	965
AclWI	GGATC	3 cut(s)	376, 956, 969
AcsI	RAATTY	2 cut(s)	542, 1060
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	511, 702, 931
AfiI	CCNNNNNNNGG	3 cut(s)	760, 993, 1072
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	158, 209, 681, 815, 976
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	233
AloI	GAACNNNNNNTCC	2 cut(s)	732, 764
AluBI	AGCT	7 cut(s)	28, 37, 472, 1006, 1069, 1199, 1221
AluI	AGCT	7 cut(s)	28, 37, 472, 1006, 1069, 1199, 1221
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	376, 956, 969
Ama87I	CYCGRG	2 cut(s)	185, 549
AoxI	GGCC	2 cut(s)	236, 763
ApaI	GGGCCC	1 cut(s)	767
ApeKI	GCWGC	4 cut(s)	358, 482, 1006, 1218
ApoI	RAATTY	2 cut(s)	542, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
Asp700I	GAANNNNTTC	3 cut(s)	153, 676, 1061
Asp718I	GGTACC	1 cut(s)	700
AspS9I	GGNCC	4 cut(s)	365, 597, 763, 764
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	135
AvaI	CYCGRG	2 cut(s)	185, 549
AvaII	GGWCC	2 cut(s)	365, 597
BaeGI	GKGCMC	1 cut(s)	767
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	3 cut(s)	39, 767, 923
BauI	CACGAG	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	370, 494, 993, 1230
BccI	CCATC	2 cut(s)	148, 987
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	2 cut(s)	507, 924
BfmI	CTRYAG	2 cut(s)	1007, 1080
BfuAI	ACCTGC	3 cut(s)	267, 676, 712
BisI	GCNGC	4 cut(s)	359, 483, 1007, 1219
BlsI	GCNGC	4 cut(s)	360, 484, 1008, 1220
Bme1390I	CCNGG	2 cut(s)	235, 363
Bme18I	GGWCC	2 cut(s)	365, 597
BmeT110I	CYCGRG	2 cut(s)	185, 549
BmgT120I	GGNCC	4 cut(s)	365, 597, 763, 764
BmiI	GGNNCC	6 cut(s)	366, 598, 702, 764, 765, 963
BmrFI	CCNGG	2 cut(s)	235, 363
BmsI	GCATC	2 cut(s)	364, 1058
BpmI	CTGGAG	2 cut(s)	53, 300
BpuEI	CTTGAG	1 cut(s)	1234
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	695, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	760, 993, 1072
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	36, 385, 942
Bse3DI	GCAATG	4 cut(s)	108, 134, 329, 785
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	695, 767
BseGI	GGATG	1 cut(s)	1049
BseLI	CCNNNNNNNGG	3 cut(s)	760, 993, 1072
BseMI	GCAATG	4 cut(s)	108, 134, 329, 785
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	3 cut(s)	36, 385, 942
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	4 cut(s)	370, 494, 993, 1230
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	238, 765
BshNI	GGYRCC	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	2 cut(s)	185, 549
BsiSI	CCGG	2 cut(s)	362, 708
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	760, 993, 1072
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	238, 765
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	2 cut(s)	185, 549
Bsp120I	GGGCCC	1 cut(s)	763
Bsp1286I	GDGCHC	3 cut(s)	39, 767, 923
Bsp143I	GATC	4 cut(s)	381, 492, 961, 1143
BspACI	CCGC	1 cut(s)	965
BspANI	GGCC	2 cut(s)	238, 765
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	6 cut(s)	366, 598, 702, 764, 765, 963
BspMAI	CTGCAG	2 cut(s)	1011, 1084
BspMI	ACCTGC	3 cut(s)	267, 676, 712
BspPI	GGATC	3 cut(s)	376, 956, 969
BspT107I	GGYRCC	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	967
BsrDI	GCAATG	4 cut(s)	108, 134, 329, 785
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	36, 385, 942
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	695, 767
BssMI	GATC	4 cut(s)	381, 492, 961, 1143
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	695, 767
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	4 cut(s)	123, 429, 620, 1045
BstC8I	GCNNGC	6 cut(s)	223, 240, 332, 480, 556, 709
BstDEI	CTNAG	3 cut(s)	38, 440, 578
BstF5I	GGATG	1 cut(s)	1049
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	4 cut(s)	384, 495, 964, 1146
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	381, 492, 961, 1143
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 1003, 1196, 1218
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	233, 361
BstSFI	CTRYAG	2 cut(s)	1007, 1080
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	370, 494, 993, 1230
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuRI	GGCC	2 cut(s)	238, 765
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	1 cut(s)	1049
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	5 cut(s)	350, 392, 935, 1016, 1050
BveI	ACCTGC	3 cut(s)	267, 676, 712
Cac8I	GCNNGC	6 cut(s)	223, 240, 332, 480, 556, 709
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	365, 597, 763, 764
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	510, 701, 930
CviAII	CATG	7 cut(s)	49, 282, 463, 787, 950, 955, 998
CviQI	GTAC	3 cut(s)	510, 701, 930
DdeI	CTNAG	3 cut(s)	38, 440, 578
DpnI	GATC	4 cut(s)	383, 494, 963, 1145
DpnII	GATC	4 cut(s)	381, 492, 961, 1143
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	695, 767
Eco24I	GRGCYC	3 cut(s)	39, 767, 923
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	365, 597
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	2 cut(s)	185, 549
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	695, 767
EcoT38I	GRGCYC	3 cut(s)	39, 767, 923
ErhI	CCWWGG	2 cut(s)	695, 767
FaeI	CATG	7 cut(s)	52, 285, 466, 790, 953, 958, 1001
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	7 cut(s)	48, 281, 462, 786, 949, 954, 997
Fnu4HI	GCNGC	4 cut(s)	359, 483, 1007, 1219
FokI	GGATG	1 cut(s)	1036
FriOI	GRGCYC	3 cut(s)	39, 767, 923
Fsp4HI	GCNGC	4 cut(s)	359, 483, 1007, 1219
FspBI	CTAG	2 cut(s)	507, 924
GluI	GCNGC	4 cut(s)	359, 483, 1007, 1219
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	2 cut(s)	53, 300
HaeIII	GGCC	2 cut(s)	238, 765
HapII	CCGG	2 cut(s)	362, 708
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	7 cut(s)	52, 285, 466, 790, 953, 958, 1001
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	2 cut(s)	313, 672
HpaII	CCGG	2 cut(s)	362, 708
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	606, 885
Hpy188I	TCNGA	5 cut(s)	41, 246, 381, 497, 755
Hpy188III	TCNNGA	8 cut(s)	23, 63, 197, 310, 317, 549, 815, 1138
Hpy8I	GTNNAC	2 cut(s)	606, 885
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	60, 349, 812, 952
HpyCH4III	ACNGT	4 cut(s)	123, 429, 620, 1045
HpyCH4V	TGCA	8 cut(s)	276, 536, 778, 783, 790, 1009, 1082, 1132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 1003, 1196, 1218
HpyF3I	CTNAG	3 cut(s)	38, 440, 578
Hsp92II	CATG	7 cut(s)	52, 285, 466, 790, 953, 958, 1001
KpnI	GGTACC	1 cut(s)	704
KroI	GCCGGC	1 cut(s)	707
KroNI	GCCGGC	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	381, 492, 961, 1143
LmnI	GCTCC	3 cut(s)	34, 382, 835
Lsp1109I	GCAGC	4 cut(s)	370, 494, 993, 1230
LweI	GCATC	2 cut(s)	364, 1058
MaeI	CTAG	2 cut(s)	507, 924
MaeIII	GTNAC	3 cut(s)	3, 660, 1039
MalI	GATC	4 cut(s)	383, 494, 963, 1145
MbiI	CCGCTC	1 cut(s)	967
MboI	GATC	4 cut(s)	381, 492, 961, 1143
MboII	GAAGA	4 cut(s)	123, 910, 1069, 1153
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	3 cut(s)	39, 767, 923
MluCI	AATT	9 cut(s)	149, 204, 542, 586, 652, 676, 1060, 1133, 1206
MluI	ACGCGT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	3 cut(s)	550, 857, 863
MnlI	CCTC	8 cut(s)	241, 279, 393, 424, 636, 761, 999, 1191
MroNI	GCCGGC	1 cut(s)	707
MroXI	GAANNNNTTC	3 cut(s)	153, 676, 1061
MseI	TTAA	3 cut(s)	396, 860, 1029
MspA1I	CMGCKG	2 cut(s)	1006, 1069
MspI	CCGG	2 cut(s)	362, 708
MspR9I	CCNGG	2 cut(s)	235, 363
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	4 cut(s)	34, 1003, 1196, 1218
NaeI	GCCGGC	1 cut(s)	709
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	381, 492, 961, 1143
NgoMIV	GCCGGC	1 cut(s)	707
NlaIII	CATG	7 cut(s)	52, 285, 466, 790, 953, 958, 1001
NlaIV	GGNNCC	6 cut(s)	366, 598, 702, 764, 765, 963
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	3, 660
PaeR7I	CTCGAG	1 cut(s)	549
PctI	GAATGC	1 cut(s)	780
PdiI	GCCGGC	1 cut(s)	709
PdmI	GAANNNNTTC	3 cut(s)	153, 676, 1061
PfeI	GAWTC	1 cut(s)	672
PflMI	CCANNNNNTGG	1 cut(s)	1072
PkrI	GCNGC	4 cut(s)	360, 484, 1008, 1220
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	6 cut(s)	366, 598, 702, 764, 765, 963
PspOMI	GGGCCC	1 cut(s)	763
PspPI	GGNCC	4 cut(s)	365, 597, 763, 764
PstI	CTGCAG	2 cut(s)	1011, 1084
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	1006, 1069
RsaI	GTAC	3 cut(s)	511, 702, 931
RsaNI	GTAC	3 cut(s)	510, 701, 930
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	396, 860, 1029
SatI	GCNGC	4 cut(s)	359, 483, 1007, 1219
Sau3AI	GATC	4 cut(s)	381, 492, 961, 1143
Sau96I	GGNCC	4 cut(s)	365, 597, 763, 764
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	235, 363
SduI	GDGCHC	3 cut(s)	39, 767, 923
SfaNI	GCATC	2 cut(s)	364, 1058
SfcI	CTRYAG	2 cut(s)	1007, 1080
Sfr274I	CTCGAG	1 cut(s)	549
SinI	GGWCC	2 cut(s)	365, 597
SlaI	CTCGAG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	549, 1213
SmoI	CTYRAG	2 cut(s)	549, 1213
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	9 cut(s)	149, 204, 542, 586, 652, 676, 1060, 1133, 1206
SsiI	CCGC	1 cut(s)	965
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	507, 924
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	233, 361
StyI	CCWWGG	2 cut(s)	695, 767
TaaI	ACNGT	4 cut(s)	123, 429, 620, 1045
TaqI	TCGA	4 cut(s)	416, 424, 550, 991
TasI	AATT	9 cut(s)	149, 204, 542, 586, 652, 676, 1060, 1133, 1206
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	1 cut(s)	672
Tru1I	TTAA	3 cut(s)	396, 860, 1029
Tru9I	TTAA	3 cut(s)	396, 860, 1029
TscAI	CASTG	5 cut(s)	357, 392, 942, 1016, 1050
TseFI	GTSAC	2 cut(s)	3, 660
TseI	GCWGC	4 cut(s)	358, 482, 1006, 1218
Tsp45I	GTSAC	2 cut(s)	3, 660
TspDTI	ATGAA	6 cut(s)	123, 555, 753, 971, 1014, 1092
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	5 cut(s)	357, 392, 942, 1016, 1050
Van91I	CCANNNNNTGG	1 cut(s)	1072
VpaK11BI	GGWCC	2 cut(s)	365, 597
XapI	RAATTY	2 cut(s)	542, 1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XhoI	CTCGAG	1 cut(s)	549
XmnI	GAANNNNTTC	3 cut(s)	153, 676, 1061
XspI	CTAG	2 cut(s)	507, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.