FvH4_2g39640

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28417539 .. 28420287
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39640.t2

Sequence Viewer

Length: 1308 bp
ATGCAACTGAAAAACGTACTCCGTGATCTGTGGATCATGAGAGATGAGCTGATGAAGAAGCCGGCCACGGCTGGAGGGCCAGAGAGAAAGAAGATGCGCCGTCGCCGGACCAGATCACATATTGCACCTGAACAGCCATTTTCACCGTTACCAGCTGAGCAGCAGAGCCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATTATCCAGCGCGTGGAAGAAGACGAGACCTCCTGGCCTGCTCGGAGGGACGTCGTTGCTTGCGCTTCGGTTTGCAGATCATGGAGGGAGATTACTAAAGAGATTGTCAAGACTCCGGAGCAATGTGGCTTGCTTACCTTCCCTATCTCACTGAAGCAGCCGGGGCAGAGAGATTCTCTGATCCAGTGCTTTATTCAGAGGGAAAGAGAAACTTCGACATATCGCCTGTTTCTCGGTTTAAGCCCTGCTCTCTCCGGGGACATGAGTAAGCTATTGTTGACAGCAAGGAAACTTAGACGGGCAACAAGTACAGAATTTGTGATATCTTTGGCTGCAGATGACTTCTCTCGAGCAAGCAGTTCTTATGTTGGAAAACTAAGGTCTAATTTTCTGGGATCCAAGTTTAACATCTATGATAGTCAGCATCCACATGGCTCTGCAATCCAAACAAGTCAGAAGTCGCATAAAAAAATGAACTCAAAGCATGTAGTTCCAAGGGTACCTGCTGGTAGTTATAATGTTGCTACTGTATCTTATGAGCTTAACATCCTCCGAACAAGGGGACCAAGAAGAATGCAGTGTGTCATGCAATCGATTCCCATCTCATCAGTTCAGGAAGGAGGTATTGCGCCTACTCCAACTGAAGGTGGCGTTGCGCCTACTCCAACTGAAGGTGGCGTTGTGCCTACTCCAACTGATTTAGAAGACTGTCTATATCAGCAAACCTCCCCATTGCCAGTTTCACAAGGAAAGAAGCTGCTGGATAATCTGAGCTGTGGTAGCCCCAGACGGGATTTGGAGCATGATGACATCAGTGACCCTCTCATTTTGAAAAACAAAGCTCCTAGATGGCACGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGCGTTACAGTGGCCTCGGTAAAGAATTTCCAGCTGGTAGCTACTGCAGAGCCTTCACAGAATGTCTCAGCGGAAGAACAAGAGAAAGTTATACTGCAATTTGGGAAAATTGGTAAAGACATCTTCACAATGGATTATCGATACCCTCTGTCTGCTTTCCAAGCCTTTGGAATTTGCTTGAGCAGCTTTGACACAAAACCAGCCTGTGAATGA

Protein Analysis

436

Amino Acids

48.86

Weight (kDa)

9.11

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 58 - 101 4.5e-06 F-box-like
Tub PF01167 119 - 430 3.6e-101 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 715
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 217
AccII CGCG 2 cut(s) 216, 1098
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 2 cut(s) 1096, 1166
AclWI GGATC 4 cut(s) 41, 379, 594, 607
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 4 cut(s) 518, 1084, 1120, 1266
AcuI CTGAAG 3 cut(s) 377, 867, 894
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 18, 514, 705
AfiI CCNNNNNNNGG 5 cut(s) 217, 763, 848, 875, 994
AgsI TTSAA 1 cut(s) 1036
AjnI CCWGG 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 224, 1165
AlwI GGATC 4 cut(s) 41, 379, 594, 607
Ama87I CYCGRG 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 5 cut(s) 63, 77, 239, 1093, 1107
ApeKI GCWGC 7 cut(s) 160, 361, 536, 961, 1063, 1066, 1278
ApoI RAATTY 4 cut(s) 518, 1084, 1120, 1266
Asp718I GGTACC 1 cut(s) 703
AspLEI GCGC 5 cut(s) 99, 216, 269, 835, 862
AspS9I GGNCC 4 cut(s) 77, 108, 767, 1093
AsuC2I CCSGG 2 cut(s) 366, 460
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 552
AvaII GGWCC 2 cut(s) 108, 767
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 703
BauI CACGAG 1 cut(s) 1058
BbsI GAAGAC 2 cut(s) 231, 915
BbvI GCAGC 7 cut(s) 172, 373, 523, 948, 1053, 1075, 1290
BccI CCATC 2 cut(s) 812, 1047
BceAI ACGGC 2 cut(s) 84, 84
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 2 cut(s) 366, 460
BcoDI GTCTC 2 cut(s) 224, 1165
BfaI CTAG 1 cut(s) 1050
BfmI CTRYAG 3 cut(s) 537, 1067, 1140
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 8 cut(s) 161, 362, 537, 962, 1064, 1067, 1096, 1279
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 8 cut(s) 162, 363, 538, 963, 1065, 1068, 1097, 1280
Bme1390I CCNGG 3 cut(s) 238, 366, 460
Bme18I GGWCC 2 cut(s) 108, 767
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 4 cut(s) 77, 108, 767, 1093
BmiI GGNNCC 4 cut(s) 601, 705, 768, 1094
BmrFI CCNGG 3 cut(s) 238, 366, 460
BmsI GCATC 2 cut(s) 84, 637
BpiI GAAGAC 2 cut(s) 231, 915
BplI GAGNNNNNCTC 2 cut(s) 364, 396
BpmI CTGGAG 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 1294
BpuMI CCSGG 2 cut(s) 366, 460
Bsa29I ATCGAT 2 cut(s) 797, 1234
BsaBI GATNNNNATC 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 5 cut(s) 66, 365, 459, 698, 1110
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 763, 848, 875, 994
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 388, 941
Bse3DI GCAATG 2 cut(s) 332, 935
Bse8I GATNNNNATC 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 238
BseCI ATCGAT 2 cut(s) 797, 1234
BseDI CCNNGG 5 cut(s) 66, 365, 459, 698, 1110
BseGI GGATG 2 cut(s) 628, 750
BseJI GATNNNNATC 1 cut(s) 803
BseLI CCNNNNNNNGG 5 cut(s) 217, 763, 848, 875, 994
BseMI GCAATG 2 cut(s) 332, 935
BseMII CTCAG 4 cut(s) 147, 180, 965, 1176
BseNI ACTGG 2 cut(s) 388, 941
BseXI GCAGC 7 cut(s) 172, 373, 523, 948, 1053, 1075, 1290
Bsh1236I CGCG 2 cut(s) 216, 1098
BshFI GGCC 5 cut(s) 65, 79, 241, 1095, 1109
BshNI GGYRCC 1 cut(s) 703
BshVI ATCGAT 2 cut(s) 797, 1234
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 5 cut(s) 62, 106, 320, 365, 459
BslFI GGGAC 3 cut(s) 266, 476, 780
BslI CCNNNNNNNGG 5 cut(s) 217, 763, 848, 875, 994
BsmAI GTCTC 2 cut(s) 224, 1165
BsmFI GGGAC 3 cut(s) 266, 476, 780
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 5 cut(s) 65, 79, 241, 1095, 1109
Bso31I GGTCTC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 552
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 6 cut(s) 25, 33, 113, 281, 384, 599
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 1096, 1166
BspANI GGCC 5 cut(s) 65, 79, 241, 1095, 1109
BspCNI CTCAG 4 cut(s) 148, 181, 966, 1175
BspDI ATCGAT 2 cut(s) 797, 1234
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 2 cut(s) 216, 1098
BspHI TCATGA 2 cut(s) 36, 199
BspLI GGNNCC 4 cut(s) 601, 705, 768, 1094
BspMAI CTGCAG 3 cut(s) 541, 1071, 1144
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 4 cut(s) 41, 379, 594, 607
BspT107I GGYRCC 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 332, 935
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 388, 941
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 5 cut(s) 66, 365, 459, 698, 1110
BssMI GATC 6 cut(s) 25, 33, 113, 281, 384, 599
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 1058
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 1 cut(s) 1058
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 4 cut(s) 147, 733, 914, 1105
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 5 cut(s) 63, 243, 265, 335, 559
BstDEI CTNAG 6 cut(s) 156, 189, 497, 581, 974, 1162
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 628, 750
BstFNI CGCG 2 cut(s) 216, 1098
BstHHI GCGC 5 cut(s) 99, 216, 269, 835, 862
BstKTI GATC 6 cut(s) 28, 36, 116, 284, 387, 602
BstMAI GTCTC 2 cut(s) 224, 1165
BstMBI GATC 6 cut(s) 25, 33, 113, 281, 384, 599
BstMWI GCNNNNNNNGC 5 cut(s) 367, 984, 1063, 1256, 1278
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 2 cut(s) 184, 692
BstSCI CCNGG 3 cut(s) 236, 364, 458
BstSFI CTRYAG 3 cut(s) 537, 1067, 1140
BstUI CGCG 2 cut(s) 216, 1098
BstV1I GCAGC 7 cut(s) 172, 373, 523, 948, 1053, 1075, 1290
BstV2I GAAGAC 2 cut(s) 231, 915
BstX2I RGATCY 1 cut(s) 599
BstXI CCANNNNNNTGG 1 cut(s) 1262
BstYI RGATCY 1 cut(s) 599
Bsu15I ATCGAT 2 cut(s) 797, 1234
BsuRI GGCC 5 cut(s) 65, 79, 241, 1095, 1109
BsuTUI ATCGAT 2 cut(s) 797, 1234
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 628, 750
BtsI GCAGTG 2 cut(s) 788, 1076
BtsIMutI CAGTG 6 cut(s) 353, 395, 788, 1024, 1076, 1110
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 5 cut(s) 63, 243, 265, 335, 559
CciI TCATGA 2 cut(s) 36, 199
CfoI GCGC 5 cut(s) 99, 216, 269, 835, 862
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 4 cut(s) 77, 108, 767, 1093
ClaI ATCGAT 2 cut(s) 797, 1234
Csp6I GTAC 3 cut(s) 17, 513, 704
CviAII CATG 9 cut(s) 37, 181, 200, 285, 466, 635, 689, 790, 1007
CviQI GTAC 3 cut(s) 17, 513, 704
DdeI CTNAG 6 cut(s) 156, 189, 497, 581, 974, 1162
DpnI GATC 6 cut(s) 27, 35, 115, 283, 386, 601
DpnII GATC 6 cut(s) 25, 33, 113, 281, 384, 599
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 108, 767
Eco57I CTGAAG 3 cut(s) 377, 867, 894
Eco88I CYCGRG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 9 cut(s) 40, 184, 203, 288, 469, 638, 692, 793, 1010
FalI AAGNNNNNCTT 4 cut(s) 400, 432, 550, 582
FaqI GGGAC 3 cut(s) 266, 476, 780
FatI CATG 9 cut(s) 36, 180, 199, 284, 465, 634, 688, 789, 1006
Fnu4HI GCNGC 8 cut(s) 161, 362, 537, 962, 1064, 1067, 1096, 1279
FokI GGATG 2 cut(s) 615, 737
Fsp4HI GCNGC 8 cut(s) 161, 362, 537, 962, 1064, 1067, 1096, 1279
FspBI CTAG 1 cut(s) 1050
GlaI GCGC 5 cut(s) 98, 215, 268, 834, 861
GluI GCNGC 8 cut(s) 161, 362, 537, 962, 1064, 1067, 1096, 1279
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 5 cut(s) 65, 79, 241, 1095, 1109
HapII CCGG 5 cut(s) 62, 106, 320, 365, 459
HhaI GCGC 5 cut(s) 99, 216, 269, 835, 862
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 9 cut(s) 40, 184, 203, 288, 469, 638, 692, 793, 1010
Hin6I GCGC 5 cut(s) 97, 214, 267, 833, 860
HinP1I GCGC 5 cut(s) 97, 214, 267, 833, 860
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HinfI GANTC 3 cut(s) 316, 377, 799
HpaII CCGG 5 cut(s) 62, 106, 320, 365, 459
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 6 cut(s) 249, 384, 402, 660, 758, 975
Hpy188III TCNNGA 7 cut(s) 37, 188, 200, 313, 320, 552, 818
Hpy8I GTNNAC 1 cut(s) 483
Hpy99I CGWCG 2 cut(s) 105, 260
HpyAV CCTTC 5 cut(s) 352, 815, 842, 869, 1158
HpyCH4III ACNGT 4 cut(s) 147, 733, 914, 1105
HpyCH4IV ACGT 2 cut(s) 15, 255
HpyF10VI GCNNNNNNNGC 5 cut(s) 367, 984, 1063, 1256, 1278
HpyF3I CTNAG 6 cut(s) 156, 189, 497, 581, 974, 1162
HpySE526I ACGT 2 cut(s) 15, 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 9 cut(s) 40, 184, 203, 288, 469, 638, 692, 793, 1010
HspAI GCGC 5 cut(s) 97, 214, 267, 833, 860
Kpn2I TCCGGA 1 cut(s) 319
KpnI GGTACC 1 cut(s) 707
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 6 cut(s) 25, 33, 113, 281, 384, 599
LmnI GCTCC 3 cut(s) 322, 1003, 1051
Lsp1109I GCAGC 7 cut(s) 172, 373, 523, 948, 1053, 1075, 1290
LweI GCATC 2 cut(s) 84, 637
MaeI CTAG 1 cut(s) 1050
MaeII ACGT 2 cut(s) 15, 255
MaeIII GTNAC 3 cut(s) 147, 1019, 1099
MalI GATC 6 cut(s) 27, 35, 115, 283, 386, 601
MboI GATC 6 cut(s) 25, 33, 113, 281, 384, 599
MboII GAAGA 8 cut(s) 67, 103, 233, 236, 786, 920, 1181, 1210
MflI RGATCY 1 cut(s) 599
MluCI AATT 7 cut(s) 518, 589, 1084, 1120, 1193, 1203, 1266
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 4 cut(s) 553, 866, 893, 920
MroI TCCGGA 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 61
MseI TTAA 3 cut(s) 443, 609, 747
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 4 cut(s) 155, 1066, 1129, 1166
MspI CCGG 5 cut(s) 62, 106, 320, 365, 459
MspR9I CCNGG 3 cut(s) 238, 366, 460
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 2 cut(s) 216, 1098
MwoI GCNNNNNNNGC 5 cut(s) 367, 984, 1063, 1256, 1278
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 366, 460
NdeII GATC 6 cut(s) 25, 33, 113, 281, 384, 599
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 9 cut(s) 40, 184, 203, 288, 469, 638, 692, 793, 1010
NlaIV GGNNCC 4 cut(s) 601, 705, 768, 1094
NmuCI GTSAC 1 cut(s) 1019
NspI RCATGY 2 cut(s) 184, 692
PaeR7I CTCGAG 1 cut(s) 552
PagI TCATGA 2 cut(s) 36, 199
PctI GAATGC 1 cut(s) 783
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 377, 799
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 8 cut(s) 162, 363, 538, 963, 1065, 1068, 1097, 1280
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PsiI TTATAA 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 601, 705, 768, 1094
PspPI GGNCC 4 cut(s) 77, 108, 767, 1093
PstI CTGCAG 3 cut(s) 541, 1071, 1144
PsuI RGATCY 1 cut(s) 599
PvuII CAGCTG 3 cut(s) 155, 1066, 1129
RsaI GTAC 3 cut(s) 18, 514, 705
RsaNI GTAC 3 cut(s) 17, 513, 704
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 3 cut(s) 443, 609, 747
SatI GCNGC 8 cut(s) 161, 362, 537, 962, 1064, 1067, 1096, 1279
Sau3AI GATC 6 cut(s) 25, 33, 113, 281, 384, 599
Sau96I GGNCC 4 cut(s) 77, 108, 767, 1093
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 3 cut(s) 238, 366, 460
SfaNI GCATC 2 cut(s) 84, 637
SfcI CTRYAG 3 cut(s) 537, 1067, 1140
Sfr274I CTCGAG 1 cut(s) 552
SinI GGWCC 2 cut(s) 108, 767
SlaI CTCGAG 1 cut(s) 552
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 552, 1273
SmoI CTYRAG 2 cut(s) 552, 1273
Sse9I AATT 7 cut(s) 518, 589, 1084, 1120, 1193, 1203, 1266
SsiI CCGC 2 cut(s) 1096, 1166
SspMI CTAG 1 cut(s) 1050
StyD4I CCNGG 3 cut(s) 236, 364, 458
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 4 cut(s) 147, 733, 914, 1105
TaiI ACGT 2 cut(s) 18, 258
TaqI TCGA 4 cut(s) 419, 553, 797, 1234
TasI AATT 7 cut(s) 518, 589, 1084, 1120, 1193, 1203, 1266
TatI WGTACW 1 cut(s) 512
TauI GCSGC 1 cut(s) 1098
TfiI GAWTC 2 cut(s) 377, 799
Tru1I TTAA 3 cut(s) 443, 609, 747
Tru9I TTAA 3 cut(s) 443, 609, 747
TscAI CASTG 6 cut(s) 360, 395, 788, 1024, 1076, 1110
TseFI GTSAC 1 cut(s) 1019
TseI GCWGC 7 cut(s) 160, 361, 536, 961, 1063, 1066, 1278
Tsp45I GTSAC 1 cut(s) 1019
TspDTI ATGAA 3 cut(s) 68, 188, 692
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 6 cut(s) 360, 395, 788, 1024, 1076, 1110
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 108, 767
XapI RAATTY 4 cut(s) 518, 1084, 1120, 1266
XceI RCATGY 2 cut(s) 184, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 997
XhoI CTCGAG 1 cut(s) 552
XspI CTAG 1 cut(s) 1050
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.