RchiOBHm_Chr6g0301261

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008298
Physical Location & Seq
Reverse (-)
61733806 .. 61735175
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27056

Sequence Viewer

Length: 375 bp
ATGTCATTGAAAAGCATAATCCGCGATCTCTGGATCATAAGAGATGAGATGAGGAAGAAGAAGAAGCCCAAGCCTGGAGGGGCAGAGAGAAAGCAGATGCGTCGTCGCCGAACCAAAGCATATATTGCACCTGAACAGCCATTTTCATTGCCATCAACTGTGCCGCAGAGTCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATAATCCAACGCGTGGAAGAAGCCGAGATCTCCTGGCCTGCTCGGAGGGATGTCGTTGCTTGTGCTTCGGTTTGCAGATCATGGAGGGAGATTACAAAGGACATTGTCAAGACTCCGGAGCAATGTGGCTTGCTTACCTTCCCCATCTCACTGAAGCAGATTCTCTGA

Protein Analysis

124

Amino Acids

14.45

Weight (kDa)

9.89

Isoelectric Point (pI)

77.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 59 - 103 3.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AccII CGCG 2 cut(s) 24, 219
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 2 cut(s) 22, 164
AclWI GGATC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 74, 220
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 2 cut(s) 73, 239
AlwI GGATC 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 242
BccI CCATC 2 cut(s) 160, 359
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 75, 241
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 75, 241
BmrFI CCNGG 2 cut(s) 75, 241
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 220
Bse3DI GCAATG 2 cut(s) 146, 335
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 75, 241
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 74, 220
BseMI GCAATG 2 cut(s) 146, 335
BseMII CTCAG 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 24, 219
BshFI GGCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 74, 220
BsnI GGCC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 4 cut(s) 25, 33, 234, 284
BspACI CCGC 2 cut(s) 22, 164
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 2 cut(s) 24, 219
BspHI TCATGA 1 cut(s) 202
BspPI GGATC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 146, 335
BssMI GATC 4 cut(s) 25, 33, 234, 284
Bst2UI CCWGG 2 cut(s) 75, 241
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 246, 338
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 24, 219
BstKTI GATC 4 cut(s) 28, 36, 237, 287
BstMBI GATC 4 cut(s) 25, 33, 234, 284
BstMWI GCNNNNNNNGC 2 cut(s) 21, 125
BstNI CCWGG 2 cut(s) 75, 241
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 73, 239
BstUI CGCG 2 cut(s) 24, 219
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 246, 338
CciI TCATGA 1 cut(s) 202
CseI GACGC 1 cut(s) 89
CviAII CATG 3 cut(s) 184, 203, 288
CviJI RGCY 6 cut(s) 67, 73, 139, 230, 244, 336
CviKI_1 RGCY 6 cut(s) 67, 73, 139, 230, 244, 336
DdeI CTNAG 1 cut(s) 192
DpnI GATC 4 cut(s) 27, 35, 236, 286
DpnII GATC 4 cut(s) 25, 33, 234, 284
EcoRII CCWGG 2 cut(s) 73, 239
FaeI CATG 3 cut(s) 187, 206, 291
FaiI YATR 8 cut(s) 17, 38, 121, 123, 185, 204, 209, 289
FatI CATG 3 cut(s) 183, 202, 287
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 187, 206, 291
HinfI GANTC 3 cut(s) 169, 319, 367
HpaII CCGG 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 252, 374
Hpy188III TCNNGA 5 cut(s) 31, 191, 203, 316, 323
Hpy99I CGWCG 2 cut(s) 105, 108
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 128, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 125
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 3 cut(s) 187, 206, 291
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 25, 33, 234, 284
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 9 cut(s) 16, 60, 87, 144, 204, 226, 253, 258, 336
LweI GCATC 1 cut(s) 87
MalI GATC 4 cut(s) 27, 35, 236, 286
MboI GATC 4 cut(s) 25, 33, 234, 284
MboII GAAGA 4 cut(s) 67, 70, 73, 236
MflI RGATCY 1 cut(s) 234
MluI ACGCGT 1 cut(s) 217
MlyI GAGTC 2 cut(s) 178, 313
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 5 cut(s) 45, 71, 198, 246, 285
MroI TCCGGA 1 cut(s) 322
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 75, 241
MvaI CCWGG 2 cut(s) 75, 241
MvnI CGCG 2 cut(s) 24, 219
MwoI GCNNNNNNNGC 2 cut(s) 21, 125
NdeII GATC 4 cut(s) 25, 33, 234, 284
NlaIII CATG 3 cut(s) 187, 206, 291
NmeAIII GCCGAG 1 cut(s) 256
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 202
PfeI GAWTC 1 cut(s) 367
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 2 cut(s) 177, 313
PpsI GAGTC 2 cut(s) 177, 313
Psp6I CCWGG 2 cut(s) 73, 239
PspGI CCWGG 2 cut(s) 73, 239
PsuI RGATCY 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 311
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 4 cut(s) 25, 33, 234, 284
SchI GAGTC 2 cut(s) 178, 313
ScrFI CCNGG 2 cut(s) 75, 241
SetI ASST 2 cut(s) 133, 347
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 2 cut(s) 22, 164
StyD4I CCNGG 2 cut(s) 73, 239
TaaI ACNGT 1 cut(s) 160
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 135, 191
TspRI CASTG 1 cut(s) 363
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 220
XceI RCATGY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.