Rh6DG416000

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
59978115 .. 59983438
5324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG416000.1

Sequence Viewer

Length: 1260 bp
ATGTCATTGAAAAGCATAATCCGCGATCTCTGGATCATAAGAGATGAGATGAGGAAGAAGAAGCCCAAGCCTGGAGGGGCAGAAGAGAGAAAGCAGATGCGTCTTCGTCGCCGAACCAAAGCATATATTGCACCTGAACAGCCATTTTCATTGCCATCAACTGTGCCGCAGAGTCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATAATCCAACGCGTGGAACAAGCCGAGATCTCCTGGCCTGCTCGGAGGGATGTCGTTGCTTGTGCTTCCGTTTGCAGATCATGGAGGGAGATTACAAACGAGATTGTCAAGACTCCGGAGCAATGTGGCTTGCTTACCTTCCCCATCTCACTCAAGCAGCCCGGGCCGAGAGATTCTCTGATCCAGTGCTTTATTCAGAGGGAAAGAGAAACTTCCACATATCGCCTGTTTCTTGGTCTAAGCCCTGCTCTCTCCGGGGACATGAGTAAGCTACTGTTGACAGCCAGGAAAATTAGACGGGCAACAAGTACAGAGTTTGTGATATCCTTGGCTGCAGATGATTTCTCTCGAGCAAGCACTACTTATGTTGGAAAACTAAGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCTCCAATCCAAACAAATCAGGAGTCACATAAAAAAATGAATTCGAAGCATGCAATTTCAAGGATACCTGCCAGTAGTTATAATGTTGCTACAGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCATCATGCAATCGATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCCCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGAGCATGATGACATGAGTGACCCGCTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACAGTGGCTTCGGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGCGGCTGAACAAGAGAAAGTAATACTGCAATTCGGGAAAATTGGTAAAGACATTTTCACAATGGATTATCGATACCCTCTCTCTACTTTCCAAGCCTTCGCAATTTGCTTGAGCTGCTTTGACACAAAACCAGCCTGTGAATGA

Protein Analysis

419

Amino Acids

47.29

Weight (kDa)

9.37

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 60 - 104 1.9e-06 F-box-like
Tub PF01167 121 - 414 9.4e-103 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
Acc36I ACCTGC 1 cut(s) 721
AccB7I CCANNNNNTGG 2 cut(s) 223, 1084
AccBSI CCGCTC 1 cut(s) 979
AccII CGCG 2 cut(s) 24, 222
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 4 cut(s) 22, 167, 977, 1118
AclWI GGATC 6 cut(s) 41, 385, 600, 613, 799, 957
AcsI RAATTY 3 cut(s) 685, 1036, 1072
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 5 cut(s) 71, 223, 641, 946, 1084
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 10, 705, 988
AjnI CCWGG 3 cut(s) 70, 242, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 1064, 1096
AluBI AGCT 7 cut(s) 481, 751, 913, 930, 998, 1018, 1230
AluI AGCT 7 cut(s) 481, 751, 913, 930, 998, 1018, 1230
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 6 cut(s) 41, 385, 600, 613, 799, 957
AlwNI CAGNNNCTG 1 cut(s) 1121
Ama87I CYCGRG 2 cut(s) 371, 558
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 3 cut(s) 245, 374, 1045
ApeKI GCWGC 8 cut(s) 367, 542, 913, 1015, 1018, 1088, 1091, 1230
ApoI RAATTY 3 cut(s) 685, 1036, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 374, 773, 1045
AsuC2I CCSGG 3 cut(s) 372, 373, 466
AsuII TTCGAA 2 cut(s) 689, 763
AvaI CYCGRG 2 cut(s) 371, 558
AvaII GGWCC 1 cut(s) 773
BamHI GGATCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 8 cut(s) 379, 529, 900, 1005, 1027, 1075, 1078, 1217
BccI CCATC 4 cut(s) 163, 362, 818, 999
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 3 cut(s) 72, 244, 496
BciVI GTATCC 1 cut(s) 702
BcnI CCSGG 3 cut(s) 372, 373, 466
BcoDI GTCTC 1 cut(s) 1117
BfaI CTAG 1 cut(s) 1002
BfmI CTRYAG 4 cut(s) 543, 735, 1019, 1092
BfuAI ACCTGC 1 cut(s) 721
BfuI GTATCC 1 cut(s) 702
BglII AGATCT 1 cut(s) 237
Bme1390I CCNGG 6 cut(s) 72, 244, 372, 373, 466, 496
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 2 cut(s) 371, 558
BmgT120I GGNCC 3 cut(s) 374, 773, 1045
BmiI GGNNCC 3 cut(s) 607, 774, 1046
BmrFI CCNGG 6 cut(s) 72, 244, 372, 373, 466, 496
BmsI GCATC 2 cut(s) 87, 801
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 370, 402
BpmI CTGGAG 2 cut(s) 93, 974
Bpu14I TTCGAA 2 cut(s) 689, 763
BpuEI CTTGAG 2 cut(s) 347, 1246
BpuMI CCSGG 3 cut(s) 372, 373, 466
Bsa29I ATCGAT 2 cut(s) 803, 1186
BsaBI GATNNNNATC 1 cut(s) 809
BsaJI CCNNGG 3 cut(s) 371, 465, 537
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 223, 641, 946, 1084
Bse1I ACTGG 4 cut(s) 394, 717, 893, 951
Bse3DI GCAATG 2 cut(s) 149, 338
Bse8I GATNNNNATC 1 cut(s) 809
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 3 cut(s) 72, 244, 496
BseCI ATCGAT 2 cut(s) 803, 1186
BseDI CCNNGG 3 cut(s) 371, 465, 537
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 809
BseLI CCNNNNNNNGG 5 cut(s) 71, 223, 641, 946, 1084
BseMI GCAATG 2 cut(s) 149, 338
BseMII CTCAG 3 cut(s) 186, 828, 1128
BseNI ACTGG 4 cut(s) 394, 717, 893, 951
BseXI GCAGC 8 cut(s) 379, 529, 900, 1005, 1027, 1075, 1078, 1217
Bsh1236I CGCG 2 cut(s) 24, 222
BshFI GGCC 3 cut(s) 247, 376, 1047
BshVI ATCGAT 2 cut(s) 803, 1186
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 2 cut(s) 371, 558
BsiSI CCGG 3 cut(s) 326, 372, 465
BslFI GGGAC 2 cut(s) 482, 786
BslI CCNNNNNNNGG 5 cut(s) 71, 223, 641, 946, 1084
BsmAI GTCTC 1 cut(s) 1117
BsmFI GGGAC 2 cut(s) 482, 786
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 3 cut(s) 247, 376, 1047
BsoBI CYCGRG 2 cut(s) 371, 558
Bsp119I TTCGAA 2 cut(s) 689, 763
Bsp1286I GDGCHC 1 cut(s) 753
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
BspACI CCGC 4 cut(s) 22, 167, 977, 1118
BspANI GGCC 3 cut(s) 247, 376, 1047
BspCNI CTCAG 3 cut(s) 187, 827, 1127
BspDI ATCGAT 2 cut(s) 803, 1186
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 2 cut(s) 24, 222
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 607, 774, 1046
BspMAI CTGCAG 3 cut(s) 547, 1023, 1096
BspMI ACCTGC 1 cut(s) 721
BspPI GGATC 6 cut(s) 41, 385, 600, 613, 799, 957
BspT104I TTCGAA 2 cut(s) 689, 763
BsrBI CCGCTC 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 149, 338
BsrI ACTGG 4 cut(s) 394, 717, 893, 951
BssECI CCNNGG 3 cut(s) 371, 465, 537
BssMI GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 3 cut(s) 72, 244, 496
Bst4CI ACNGT 4 cut(s) 163, 486, 739, 1057
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 128
BstBI TTCGAA 2 cut(s) 689, 763
BstC8I GCNNGC 4 cut(s) 249, 341, 565, 696
BstDEI CTNAG 5 cut(s) 195, 449, 587, 814, 1114
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 2 cut(s) 24, 222
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 8 cut(s) 28, 36, 240, 290, 393, 608, 807, 952
BstMAI GTCTC 1 cut(s) 1117
BstMBI GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
BstMWI GCNNNNNNNGC 6 cut(s) 21, 128, 373, 936, 1015, 1230
BstNI CCWGG 3 cut(s) 72, 244, 496
BstNSI RCATGY 2 cut(s) 190, 698
BstSCI CCNGG 6 cut(s) 70, 242, 370, 371, 464, 494
BstSFI CTRYAG 4 cut(s) 543, 735, 1019, 1092
BstUI CGCG 2 cut(s) 24, 222
BstV1I GCAGC 8 cut(s) 379, 529, 900, 1005, 1027, 1075, 1078, 1217
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 3 cut(s) 237, 605, 949
BstYI RGATCY 3 cut(s) 237, 605, 949
Bsu15I ATCGAT 2 cut(s) 803, 1186
BsuI GTATCC 1 cut(s) 702
BsuRI GGCC 3 cut(s) 247, 376, 1047
BsuTUI ATCGAT 2 cut(s) 803, 1186
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 2 cut(s) 794, 1028
BtsIMutI CAGTG 4 cut(s) 401, 794, 1028, 1062
BveI ACCTGC 1 cut(s) 721
Cac8I GCNNGC 4 cut(s) 249, 341, 565, 696
CaiI CAGNNNCTG 1 cut(s) 1121
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 3 cut(s) 374, 773, 1045
Cfr9I CCCGGG 1 cut(s) 371
ClaI ATCGAT 2 cut(s) 803, 1186
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 519
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 5 cut(s) 195, 449, 587, 814, 1114
DpnI GATC 8 cut(s) 27, 35, 239, 289, 392, 607, 806, 951
DpnII GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
DraI TTTAAA 1 cut(s) 858
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 753
Eco32I GATATC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 773
Eco53kI GAGCTC 1 cut(s) 751
Eco88I CYCGRG 2 cut(s) 371, 558
EcoICRI GAGCTC 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 70, 242, 494
EcoRV GATATC 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 537
FalI AAGNNNNNCTT 4 cut(s) 406, 438, 556, 588
FaqI GGGAC 2 cut(s) 482, 786
FauI CCCGC 1 cut(s) 984
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 753
FspBI CTAG 1 cut(s) 1002
GlaI GCGC 1 cut(s) 840
GsuI CTGGAG 2 cut(s) 93, 974
HaeIII GGCC 3 cut(s) 247, 376, 1047
HapII CCGG 3 cut(s) 326, 372, 465
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 841
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 4 cut(s) 172, 322, 383, 668
HpaII CCGG 3 cut(s) 326, 372, 465
Hpy166II GTNNAC 2 cut(s) 489, 615
Hpy188I TCNGA 3 cut(s) 255, 390, 408
Hpy8I GTNNAC 2 cut(s) 489, 615
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 5 cut(s) 358, 770, 821, 1110, 1222
HpyCH4III ACNGT 4 cut(s) 163, 486, 739, 1057
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 128, 373, 936, 1015, 1230
HpyF3I CTNAG 5 cut(s) 195, 449, 587, 814, 1114
HspAI GCGC 1 cut(s) 839
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
LmnI GCTCC 3 cut(s) 328, 955, 1003
Lsp1109I GCAGC 8 cut(s) 379, 529, 900, 1005, 1027, 1075, 1078, 1217
LweI GCATC 2 cut(s) 87, 801
MaeI CTAG 1 cut(s) 1002
MaeIII GTNAC 3 cut(s) 669, 971, 1051
MalI GATC 8 cut(s) 27, 35, 239, 289, 392, 607, 806, 951
MbiI CCGCTC 1 cut(s) 979
MboI GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
MboII GAAGA 5 cut(s) 67, 70, 95, 95, 792
MfeI CAATTG 1 cut(s) 1079
MflI RGATCY 3 cut(s) 237, 605, 949
MhlI GDGCHC 1 cut(s) 753
MluI ACGCGT 1 cut(s) 220
MlyI GAGTC 3 cut(s) 181, 316, 677
MmeI TCCRAC 3 cut(s) 241, 559, 872
MnlI CCTC 9 cut(s) 45, 68, 201, 249, 288, 402, 645, 892, 1203
MroI TCCGGA 1 cut(s) 325
MseI TTAA 1 cut(s) 857
MspA1I CMGCKG 2 cut(s) 1018, 1118
MspI CCGG 3 cut(s) 326, 372, 465
MspR9I CCNGG 6 cut(s) 72, 244, 372, 373, 466, 496
MunI CAATTG 1 cut(s) 1079
Mva1269I GAATGC 1 cut(s) 789
MvaI CCWGG 3 cut(s) 72, 244, 496
MvnI CGCG 2 cut(s) 24, 222
MwoI GCNNNNNNNGC 6 cut(s) 21, 128, 373, 936, 1015, 1230
NciI CCSGG 3 cut(s) 372, 373, 466
NdeII GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
NlaIV GGNNCC 3 cut(s) 607, 774, 1046
NmeAIII GCCGAG 2 cut(s) 259, 402
NmuCI GTSAC 2 cut(s) 669, 971
NspI RCATGY 2 cut(s) 190, 698
NspV TTCGAA 2 cut(s) 689, 763
PaeI GCATGC 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 558
PagI TCATGA 1 cut(s) 205
PctI GAATGC 1 cut(s) 789
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 2 cut(s) 223, 1084
PleI GAGTC 3 cut(s) 180, 316, 676
PpsI GAGTC 3 cut(s) 180, 316, 676
PsiI TTATAA 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 3 cut(s) 70, 242, 494
PspGI CCWGG 3 cut(s) 70, 242, 494
PspN4I GGNNCC 3 cut(s) 607, 774, 1046
PspPI GGNCC 3 cut(s) 374, 773, 1045
PstI CTGCAG 3 cut(s) 547, 1023, 1096
PstNI CAGNNNCTG 1 cut(s) 1121
PsuI RGATCY 3 cut(s) 237, 605, 949
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 1 cut(s) 857
Sau3AI GATC 8 cut(s) 25, 33, 237, 287, 390, 605, 804, 949
Sau96I GGNCC 3 cut(s) 374, 773, 1045
SchI GAGTC 3 cut(s) 181, 316, 677
ScrFI CCNGG 6 cut(s) 72, 244, 372, 373, 466, 496
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 2 cut(s) 87, 801
SfcI CTRYAG 4 cut(s) 543, 735, 1019, 1092
Sfr274I CTCGAG 1 cut(s) 558
SfuI TTCGAA 2 cut(s) 689, 763
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 558
SmaI CCCGGG 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 362, 558, 1225
SmoI CTYRAG 3 cut(s) 362, 558, 1225
SphI GCATGC 1 cut(s) 698
SrfI GCCCGGGC 1 cut(s) 373
SsiI CCGC 4 cut(s) 22, 167, 977, 1118
SspMI CTAG 1 cut(s) 1002
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 6 cut(s) 70, 242, 370, 371, 464, 494
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 4 cut(s) 163, 486, 739, 1057
TaqI TCGA 5 cut(s) 559, 689, 763, 803, 1186
TatI WGTACW 1 cut(s) 518
TauI GCSGC 2 cut(s) 169, 1121
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 4 cut(s) 401, 794, 1028, 1062
TseFI GTSAC 2 cut(s) 669, 971
TseI GCWGC 8 cut(s) 367, 542, 913, 1015, 1018, 1088, 1091, 1230
Tsp45I GTSAC 2 cut(s) 669, 971
TspDTI ATGAA 3 cut(s) 138, 194, 698
TspGWI ACGGA 1 cut(s) 268
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 4 cut(s) 401, 794, 1028, 1062
Van91I CCANNNNNTGG 2 cut(s) 223, 1084
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 3 cut(s) 685, 1036, 1072
XceI RCATGY 2 cut(s) 190, 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 558
XmaI CCCGGG 1 cut(s) 371
XspI CTAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.