Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000171

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

119 .. 799

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_171G00441300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATAAACAGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCCCCAATCCAAACAAATCAGAAGTCACATAAAAAAATGAATTCAAAGCATGCAATTTCAAGGATACCTGCCGGTAGTTATAATGTTGCTACGGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCATCATGCAATCGATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCCCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGACCATGATGACATGAGTGACCCGCTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACAGTGGCTTCGGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGCGGCTGAACAAGAGAAAGTAATACTGCAATTCGGAAAAATTGGTAAAGACATTTTCACAATGGATTATCGATACCCTCTCTCTACTTTCCAAGCCTTCGCAATTTGCTTGAGCTGCTTTGACACAAAACCAGCCTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

226

Amino Acids

25.18

Weight (kDa)

9.02

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	4 - 221	5.6e-74	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	400
AciI	CCGC	2 cut(s)	398, 539
AclWI	GGATC	4 cut(s)	21, 34, 220, 378
AcsI	RAATTY	3 cut(s)	106, 457, 493
AfiI	CCNNNNNNNGG	3 cut(s)	62, 367, 505
AgsI	TTSAA	3 cut(s)	111, 126, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	6 cut(s)	172, 334, 351, 419, 439, 651
AluI	AGCT	6 cut(s)	172, 334, 351, 419, 439, 651
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	4 cut(s)	21, 34, 220, 378
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	6 cut(s)	334, 436, 439, 509, 512, 651
ApoI	RAATTY	3 cut(s)	106, 457, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	194, 376, 466
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	194, 376
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	6 cut(s)	321, 426, 448, 496, 499, 638
BccI	CCATC	2 cut(s)	239, 420
BceAI	ACGGC	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	440, 513
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	7 cut(s)	335, 437, 440, 510, 513, 540, 652
BlsI	GCNGC	7 cut(s)	336, 438, 441, 511, 514, 541, 653
Bme18I	GGWCC	2 cut(s)	194, 376
BmgT120I	GGNCC	3 cut(s)	194, 376, 466
BmiI	GGNNCC	4 cut(s)	28, 67, 195, 467
BmsI	GCATC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	667
Bsa29I	ATCGAT	2 cut(s)	224, 607
BsaBI	GATNNNNATC	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 367, 505
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	314, 372
Bse8I	GATNNNNATC	1 cut(s)	230
BseCI	ATCGAT	2 cut(s)	224, 607
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	3 cut(s)	62, 367, 505
BseMII	CTCAG	2 cut(s)	249, 549
BseNI	ACTGG	2 cut(s)	314, 372
BseXI	GCAGC	6 cut(s)	321, 426, 448, 496, 499, 638
BshFI	GGCC	1 cut(s)	468
BshVI	ATCGAT	2 cut(s)	224, 607
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	62, 367, 505
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	26, 225, 370
BspACI	CCGC	2 cut(s)	398, 539
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	248, 548
BspDI	ATCGAT	2 cut(s)	224, 607
BspLI	GGNNCC	4 cut(s)	28, 67, 195, 467
BspMAI	CTGCAG	2 cut(s)	444, 517
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	4 cut(s)	21, 34, 220, 378
BspT104I	TTCGAA	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	314, 372
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	26, 225, 370
Bst4CI	ACNGT	2 cut(s)	160, 478
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	235, 535
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	29, 228, 373
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	3 cut(s)	26, 225, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 436, 651
BstNSI	RCATGY	1 cut(s)	119
BstSFI	CTRYAG	2 cut(s)	440, 513
BstV1I	GCAGC	6 cut(s)	321, 426, 448, 496, 499, 638
BstX2I	RGATCY	2 cut(s)	26, 370
BstYI	RGATCY	2 cut(s)	26, 370
Bsu15I	ATCGAT	2 cut(s)	224, 607
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	468
BsuTUI	ATCGAT	2 cut(s)	224, 607
BtsI	GCAGTG	2 cut(s)	215, 449
BtsIMutI	CAGTG	3 cut(s)	215, 449, 483
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	194, 376, 466
ClaI	ATCGAT	2 cut(s)	224, 607
CviAII	CATG	6 cut(s)	62, 116, 217, 380, 388, 431
DdeI	CTNAG	2 cut(s)	235, 535
DpnI	GATC	3 cut(s)	28, 227, 372
DpnII	GATC	3 cut(s)	26, 225, 370
DraI	TTTAAA	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	194, 376
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	6 cut(s)	65, 119, 220, 383, 391, 434
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	6 cut(s)	61, 115, 216, 379, 387, 430
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	7 cut(s)	335, 437, 440, 510, 513, 540, 652
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	7 cut(s)	335, 437, 440, 510, 513, 540, 652
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	7 cut(s)	335, 437, 440, 510, 513, 540, 652
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	6 cut(s)	65, 119, 220, 383, 391, 434
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	87, 572
Hpy188III	TCNNGA	2 cut(s)	245, 374
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	4 cut(s)	191, 242, 531, 643
HpyCH4III	ACNGT	2 cut(s)	160, 478
HpyCH4V	TGCA	7 cut(s)	119, 208, 213, 220, 442, 515, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 436, 651
HpyF3I	CTNAG	2 cut(s)	235, 535
Hsp92II	CATG	6 cut(s)	65, 119, 220, 383, 391, 434
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	26, 225, 370
LmnI	GCTCC	2 cut(s)	71, 424
Lsp1109I	GCAGC	6 cut(s)	321, 426, 448, 496, 499, 638
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	90, 392, 472
MalI	GATC	3 cut(s)	28, 227, 372
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	3 cut(s)	26, 225, 370
MboII	GAAGA	1 cut(s)	213
MfeI	CAATTG	1 cut(s)	500
MflI	RGATCY	2 cut(s)	26, 370
MhlI	GDGCHC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	3 cut(s)	66, 313, 624
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	2 cut(s)	439, 539
MspI	CCGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	357, 436, 651
NdeII	GATC	3 cut(s)	26, 225, 370
NlaIII	CATG	6 cut(s)	65, 119, 220, 383, 391, 434
NlaIV	GGNNCC	4 cut(s)	28, 67, 195, 467
NmuCI	GTSAC	2 cut(s)	90, 392
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	119
PctI	GAATGC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	7 cut(s)	336, 438, 441, 511, 514, 541, 653
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	4 cut(s)	28, 67, 195, 467
PspPI	GGNCC	3 cut(s)	194, 376, 466
PstI	CTGCAG	2 cut(s)	444, 517
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	26, 370
PvuII	CAGCTG	1 cut(s)	439
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	7 cut(s)	335, 437, 440, 510, 513, 540, 652
Sau3AI	GATC	3 cut(s)	26, 225, 370
Sau96I	GGNCC	3 cut(s)	194, 376, 466
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	9 cut(s)	14, 136, 174, 305, 336, 353, 421, 441, 653
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	2 cut(s)	440, 513
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	2 cut(s)	194, 376
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SphI	GCATGC	1 cut(s)	119
SsiI	CCGC	2 cut(s)	398, 539
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	160, 478
TaqI	TCGA	3 cut(s)	184, 224, 607
TauI	GCSGC	1 cut(s)	542
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	3 cut(s)	215, 449, 483
TseFI	GTSAC	2 cut(s)	90, 392
TseI	GCWGC	6 cut(s)	334, 436, 439, 509, 512, 651
Tsp45I	GTSAC	2 cut(s)	90, 392
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	3 cut(s)	215, 449, 483
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	194, 376
XapI	RAATTY	3 cut(s)	106, 457, 493
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.