RLG00000011266

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
8089638 .. 8091864
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011266

Sequence Viewer

Length: 1272 bp
ATGTCATTGAAAAGCATAATCCGCGATCTCTGGATCATAAGAGATGAGATGAGGAAGAAGAAGGCCAAGCCTGGAGGGGCAGAGAGAAAGCAGATGCTGCGTCGTCGCCGAACCAAAGCATATATTGCACCTGAACAGCCATTTTCATTGCCATCAACTGTGCCGCAGAGTCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATAATCCAACGCGTGGAAGAAGATGAGATCTCCTGGCCTGCTCGGAGGGATGTCGTTGCTTGTGCTTCGGTTTGCAGATCATGGAGAGAGATTACAAAGGAGATTGTCAAGACTCCGGAGCAATGTGGCTTGCTTACCTTCCCCATCTCACTGAAGCAGCCGGGGCCGAGAGATTCTCTGATCCAGTGCTTTATTCAGAGGGAAAGAGAAACTTCGACATATCGCCTGTTTCTTGGTCTAAGCCCTGCTCTCTCCGGGGACATGAGTAAGCTACTGTTGACAGCAAGGAAAATTAGACGGGCAACAAGTACAGAGTTTGTGATATCCTTGGCCGCAGATGATTTCTCTCGAGCAAGCAGTACTTATGTCGGAAAACTAAGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCTCCAATCCAAACAAATCAGAAGTCACATAAAAAAATGAATTCAAAGCATGCAATTTCAAGGATACCTGCTGGTAGTTATAATGTTGCTACGGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCATCATGCAATCGATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCCCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGAGCATGATGACATGAGTGACCCGCTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACAGTGGCTTCAGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGCGGCTGAACAAGAGAAAGTAATACTGCAATTTGGGAAAATTGCTAGTGCGTTACCTGAAGTCGCACGAGGTTGTGTAATGGCAGTAAAGCATATAATCGGCAGCCATGCCGTCGAGGCTTGGCGGGATTATCTGGTTCTGAGTCACTGGATTCCATGA

Protein Analysis

424

Amino Acids

47.55

Weight (kDa)

9.61

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 59 - 102 4.7e-06 F-box-like
Tub PF01167 120 - 387 1.9e-82 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
Acc36I ACCTGC 1 cut(s) 718
AccB7I CCANNNNNTGG 2 cut(s) 220, 1081
AccBSI CCGCTC 1 cut(s) 976
AccII CGCG 2 cut(s) 24, 219
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 6 cut(s) 22, 164, 540, 974, 1115, 1237
AclWI GGATC 6 cut(s) 41, 382, 597, 610, 796, 954
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 3 cut(s) 682, 1033, 1069
AcuI CTGAAG 3 cut(s) 380, 1044, 1191
AfaI GTAC 2 cut(s) 517, 568
AfiI CCNNNNNNNGG 4 cut(s) 220, 638, 943, 1081
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 10, 687, 702, 985
AjnI CCWGG 2 cut(s) 70, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AluBI AGCT 6 cut(s) 478, 748, 910, 927, 995, 1015
AluI AGCT 6 cut(s) 478, 748, 910, 927, 995, 1015
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 1114
AlwI GGATC 6 cut(s) 41, 382, 597, 610, 796, 954
AlwNI CAGNNNCTG 2 cut(s) 97, 1118
Ama87I CYCGRG 1 cut(s) 555
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 5 cut(s) 63, 242, 371, 537, 1042
ApeKI GCWGC 8 cut(s) 97, 364, 910, 1012, 1015, 1085, 1088, 1215
ApoI RAATTY 3 cut(s) 682, 1033, 1069
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 3 cut(s) 371, 770, 1042
AsuC2I CCSGG 2 cut(s) 369, 463
AsuII TTCGAA 1 cut(s) 760
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 770
BamHI GGATCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 750
BauI CACGAG 1 cut(s) 1179
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 8 cut(s) 84, 376, 897, 1002, 1024, 1072, 1075, 1227
BccI CCATC 4 cut(s) 160, 359, 815, 996
BceAI ACGGC 2 cut(s) 1029, 1208
BciT130I CCWGG 2 cut(s) 72, 241
BciVI GTATCC 1 cut(s) 699
BcnI CCSGG 2 cut(s) 369, 463
BcoDI GTCTC 1 cut(s) 1114
BfaI CTAG 2 cut(s) 999, 1158
BfmI CTRYAG 2 cut(s) 1016, 1089
BfuAI ACCTGC 1 cut(s) 718
BfuI GTATCC 1 cut(s) 699
BglI GCCNNNNNGGC 1 cut(s) 1229
BglII AGATCT 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 4 cut(s) 72, 241, 369, 463
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 3 cut(s) 371, 770, 1042
BmiI GGNNCC 4 cut(s) 372, 604, 771, 1043
BmrFI CCNGG 4 cut(s) 72, 241, 369, 463
BmsI GCATC 2 cut(s) 84, 798
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 2 cut(s) 93, 971
Bpu14I TTCGAA 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 369, 463
Bsa29I ATCGAT 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 368, 462, 534
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 638, 943, 1081
Bse1I ACTGG 4 cut(s) 391, 890, 948, 1265
Bse3DI GCAATG 2 cut(s) 146, 335
Bse8I GATNNNNATC 1 cut(s) 806
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 72, 241
BseCI ATCGAT 1 cut(s) 800
BseDI CCNNGG 3 cut(s) 368, 462, 534
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 806
BseLI CCNNNNNNNGG 4 cut(s) 220, 638, 943, 1081
BseMI GCAATG 2 cut(s) 146, 335
BseMII CTCAG 4 cut(s) 183, 825, 1125, 1244
BseNI ACTGG 4 cut(s) 391, 890, 948, 1265
BseXI GCAGC 8 cut(s) 84, 376, 897, 1002, 1024, 1072, 1075, 1227
Bsh1236I CGCG 2 cut(s) 24, 219
BshFI GGCC 5 cut(s) 65, 244, 373, 539, 1044
BshVI ATCGAT 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 3 cut(s) 323, 368, 462
BslFI GGGAC 2 cut(s) 479, 783
BslI CCNNNNNNNGG 4 cut(s) 220, 638, 943, 1081
BsmAI GTCTC 1 cut(s) 1114
BsmFI GGGAC 2 cut(s) 479, 783
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 5 cut(s) 65, 244, 373, 539, 1044
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 750
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
BspACI CCGC 6 cut(s) 22, 164, 540, 974, 1115, 1237
BspANI GGCC 5 cut(s) 65, 244, 373, 539, 1044
BspCNI CTCAG 4 cut(s) 184, 824, 1124, 1245
BspDI ATCGAT 1 cut(s) 800
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 2 cut(s) 24, 219
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 4 cut(s) 372, 604, 771, 1043
BspMAI CTGCAG 2 cut(s) 1020, 1093
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 6 cut(s) 41, 382, 597, 610, 796, 954
BspT104I TTCGAA 1 cut(s) 760
BsrBI CCGCTC 1 cut(s) 976
BsrDI GCAATG 2 cut(s) 146, 335
BsrI ACTGG 4 cut(s) 391, 890, 948, 1265
BssECI CCNNGG 3 cut(s) 368, 462, 534
BssMI GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
BssSI CACGAG 1 cut(s) 1179
BssT1I CCWWGG 1 cut(s) 534
Bst2BI CACGAG 1 cut(s) 1179
Bst2UI CCWGG 2 cut(s) 72, 241
Bst4CI ACNGT 4 cut(s) 160, 483, 736, 1054
BstAPI GCANNNNNTGC 2 cut(s) 97, 125
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 246, 338, 562, 693
BstDEI CTNAG 6 cut(s) 192, 446, 584, 811, 1111, 1253
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 24, 219
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 8 cut(s) 28, 36, 237, 287, 390, 605, 804, 949
BstMAI GTCTC 1 cut(s) 1114
BstMBI GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
BstMWI GCNNNNNNNGC 7 cut(s) 21, 97, 125, 370, 933, 1012, 1229
BstNI CCWGG 2 cut(s) 72, 241
BstNSI RCATGY 2 cut(s) 187, 695
BstSCI CCNGG 4 cut(s) 70, 239, 367, 461
BstSFI CTRYAG 2 cut(s) 1016, 1089
BstUI CGCG 2 cut(s) 24, 219
BstV1I GCAGC 8 cut(s) 84, 376, 897, 1002, 1024, 1072, 1075, 1227
BstX2I RGATCY 3 cut(s) 234, 602, 946
BstYI RGATCY 3 cut(s) 234, 602, 946
Bsu15I ATCGAT 1 cut(s) 800
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 5 cut(s) 65, 244, 373, 539, 1044
BsuTUI ATCGAT 1 cut(s) 800
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 2 cut(s) 791, 1025
BtsIMutI CAGTG 6 cut(s) 356, 398, 791, 1025, 1059, 1258
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 4 cut(s) 246, 338, 562, 693
CaiI CAGNNNCTG 2 cut(s) 97, 1118
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 3 cut(s) 371, 770, 1042
ClaI ATCGAT 1 cut(s) 800
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 516, 567
CviQI GTAC 2 cut(s) 516, 567
DdeI CTNAG 6 cut(s) 192, 446, 584, 811, 1111, 1253
DpnI GATC 8 cut(s) 27, 35, 236, 286, 389, 604, 803, 948
DpnII GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
DraI TTTAAA 1 cut(s) 855
EaeI YGGCCR 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 750
Eco32I GATATC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 748
Eco57I CTGAAG 3 cut(s) 380, 1044, 1191
Eco88I CYCGRG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 70, 239
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 534
FalI AAGNNNNNCTT 4 cut(s) 403, 435, 553, 585
FaqI GGGAC 2 cut(s) 479, 783
FauI CCCGC 2 cut(s) 981, 1230
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 750
FspBI CTAG 2 cut(s) 999, 1158
GlaI GCGC 1 cut(s) 837
GsuI CTGGAG 2 cut(s) 93, 971
HaeIII GGCC 5 cut(s) 65, 244, 373, 539, 1044
HapII CCGG 3 cut(s) 323, 368, 462
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 838
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 5 cut(s) 169, 319, 380, 1255, 1264
HpaII CCGG 3 cut(s) 323, 368, 462
Hpy166II GTNNAC 2 cut(s) 486, 612
Hpy188I TCNGA 6 cut(s) 252, 387, 405, 578, 663, 1254
Hpy188III TCNNGA 8 cut(s) 31, 191, 203, 316, 323, 555, 821, 950
Hpy8I GTNNAC 2 cut(s) 486, 612
Hpy99I CGWCG 3 cut(s) 105, 108, 1229
HpyAV CCTTC 5 cut(s) 55, 355, 767, 818, 1107
HpyCH4III ACNGT 4 cut(s) 160, 483, 736, 1054
HpyCH4V TGCA 9 cut(s) 128, 282, 695, 784, 789, 796, 1018, 1091, 1141
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 97, 125, 370, 933, 1012, 1229
HpyF3I CTNAG 6 cut(s) 192, 446, 584, 811, 1111, 1253
HspAI GCGC 1 cut(s) 836
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
LmnI GCTCC 3 cut(s) 325, 952, 1000
Lsp1109I GCAGC 8 cut(s) 84, 376, 897, 1002, 1024, 1072, 1075, 1227
LweI GCATC 2 cut(s) 84, 798
MaeI CTAG 2 cut(s) 999, 1158
MaeIII GTNAC 5 cut(s) 666, 968, 1048, 1164, 1256
MalI GATC 8 cut(s) 27, 35, 236, 286, 389, 604, 803, 948
MbiI CCGCTC 1 cut(s) 976
MboI GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
MboII GAAGA 5 cut(s) 67, 70, 236, 239, 789
MfeI CAATTG 1 cut(s) 1076
MflI RGATCY 3 cut(s) 234, 602, 946
MhlI GDGCHC 1 cut(s) 750
MluI ACGCGT 1 cut(s) 217
MlyI GAGTC 3 cut(s) 178, 313, 1264
MmeI TCCRAC 3 cut(s) 238, 556, 869
MnlI CCTC 9 cut(s) 45, 68, 198, 246, 399, 642, 889, 1175, 1222
MroI TCCGGA 1 cut(s) 322
MseI TTAA 1 cut(s) 854
MspA1I CMGCKG 2 cut(s) 1015, 1115
MspI CCGG 3 cut(s) 323, 368, 462
MspR9I CCNGG 4 cut(s) 72, 241, 369, 463
MunI CAATTG 1 cut(s) 1076
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 2 cut(s) 72, 241
MvnI CGCG 2 cut(s) 24, 219
MwoI GCNNNNNNNGC 7 cut(s) 21, 97, 125, 370, 933, 1012, 1229
NciI CCSGG 2 cut(s) 369, 463
NdeII GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
NlaIV GGNNCC 4 cut(s) 372, 604, 771, 1043
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 3 cut(s) 666, 968, 1256
NspI RCATGY 2 cut(s) 187, 695
NspV TTCGAA 1 cut(s) 760
PaeI GCATGC 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 555
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 786
PfeI GAWTC 2 cut(s) 380, 1264
PflMI CCANNNNNTGG 2 cut(s) 220, 1081
PleI GAGTC 3 cut(s) 177, 313, 1263
PpsI GAGTC 3 cut(s) 177, 313, 1263
PsiI TTATAA 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 70, 239
PspGI CCWGG 2 cut(s) 70, 239
PspN4I GGNNCC 4 cut(s) 372, 604, 771, 1043
PspPI GGNCC 3 cut(s) 371, 770, 1042
PstI CTGCAG 2 cut(s) 1020, 1093
PstNI CAGNNNCTG 2 cut(s) 97, 1118
PsuI RGATCY 3 cut(s) 234, 602, 946
PvuII CAGCTG 1 cut(s) 1015
RsaI GTAC 2 cut(s) 517, 568
RsaNI GTAC 2 cut(s) 516, 567
SacI GAGCTC 1 cut(s) 750
SaqAI TTAA 1 cut(s) 854
Sau3AI GATC 8 cut(s) 25, 33, 234, 284, 387, 602, 801, 946
Sau96I GGNCC 3 cut(s) 371, 770, 1042
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 3 cut(s) 178, 313, 1264
ScrFI CCNGG 4 cut(s) 72, 241, 369, 463
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 84, 798
SfcI CTRYAG 2 cut(s) 1016, 1089
Sfr274I CTCGAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 760
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SphI GCATGC 1 cut(s) 695
SsiI CCGC 6 cut(s) 22, 164, 540, 974, 1115, 1237
SspMI CTAG 2 cut(s) 999, 1158
SstI GAGCTC 1 cut(s) 750
StyD4I CCNGG 4 cut(s) 70, 239, 367, 461
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 160, 483, 736, 1054
TaqI TCGA 5 cut(s) 422, 556, 760, 800, 1227
TatI WGTACW 2 cut(s) 515, 566
TauI GCSGC 3 cut(s) 166, 542, 1118
TfiI GAWTC 2 cut(s) 380, 1264
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 6 cut(s) 363, 398, 791, 1025, 1059, 1265
TseFI GTSAC 3 cut(s) 666, 968, 1256
TseI GCWGC 8 cut(s) 97, 364, 910, 1012, 1015, 1085, 1088, 1215
Tsp45I GTSAC 3 cut(s) 666, 968, 1256
TspDTI ATGAA 3 cut(s) 135, 191, 695
TspRI CASTG 6 cut(s) 363, 398, 791, 1025, 1059, 1265
Van91I CCANNNNNTGG 2 cut(s) 220, 1081
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 3 cut(s) 682, 1033, 1069
XceI RCATGY 2 cut(s) 187, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 555
XspI CTAG 2 cut(s) 999, 1158
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.