Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

8331467 .. 8332578

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGAAATAAGAATGAACAGCAAAATGGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCCCCAATCCAAACAAATCAGAAGTCACATAAAAAAATGAATTCAAAGCATGCAATTTCAAGGATACCTGCCGGTAGTTATAATGTTGCTACGGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCATCATGCAATCGATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCCCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGACCATGATGACATGAGTGACCCGCTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACAGTGGCTTCGGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGCGGCTGAACAAGAGAAAGTAATACTGCAATTCGGAAAAATTGGTAAAGACATTTTCACAATGGATTATCGATACCCTCTCTCTACTTTCCAAGCCTTCGCAATTTGCTTGAGCTGCTTTGACACAAAACCAGCCTGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

232

Amino Acids

25.86

Weight (kDa)

9.01

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	11 - 227	2e-73	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	160
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	418
AciI	CCGC	2 cut(s)	416, 557
AclWI	GGATC	4 cut(s)	39, 52, 238, 396
AcsI	RAATTY	3 cut(s)	124, 475, 511
AfiI	CCNNNNNNNGG	3 cut(s)	80, 385, 523
AgsI	TTSAA	3 cut(s)	129, 144, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	6 cut(s)	190, 352, 369, 437, 457, 669
AluI	AGCT	6 cut(s)	190, 352, 369, 437, 457, 669
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	4 cut(s)	39, 52, 238, 396
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	6 cut(s)	352, 454, 457, 527, 530, 669
ApoI	RAATTY	3 cut(s)	124, 475, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	212, 394, 484
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	212, 394
BamHI	GGATCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	6 cut(s)	339, 444, 466, 514, 517, 656
BccI	CCATC	2 cut(s)	257, 438
BceAI	ACGGC	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	556
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	458, 531
BfuAI	ACCTGC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	7 cut(s)	353, 455, 458, 528, 531, 558, 670
BlsI	GCNGC	7 cut(s)	354, 456, 459, 529, 532, 559, 671
Bme18I	GGWCC	2 cut(s)	212, 394
BmgT120I	GGNCC	3 cut(s)	212, 394, 484
BmiI	GGNNCC	4 cut(s)	46, 85, 213, 485
BmsI	GCATC	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	685
Bsa29I	ATCGAT	2 cut(s)	242, 625
BsaBI	GATNNNNATC	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 385, 523
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	332, 390
Bse8I	GATNNNNATC	1 cut(s)	248
BseCI	ATCGAT	2 cut(s)	242, 625
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	80, 385, 523
BseMII	CTCAG	2 cut(s)	267, 567
BseNI	ACTGG	2 cut(s)	332, 390
BseXI	GCAGC	6 cut(s)	339, 444, 466, 514, 517, 656
BshFI	GGCC	1 cut(s)	486
BshVI	ATCGAT	2 cut(s)	242, 625
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	80, 385, 523
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	44, 243, 388
BspACI	CCGC	2 cut(s)	416, 557
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	266, 566
BspDI	ATCGAT	2 cut(s)	242, 625
BspLI	GGNNCC	4 cut(s)	46, 85, 213, 485
BspMAI	CTGCAG	2 cut(s)	462, 535
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	4 cut(s)	39, 52, 238, 396
BspT104I	TTCGAA	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	332, 390
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	3 cut(s)	44, 243, 388
Bst4CI	ACNGT	2 cut(s)	178, 496
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	253, 553
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	47, 246, 391
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	3 cut(s)	44, 243, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 454, 669
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	458, 531
BstV1I	GCAGC	6 cut(s)	339, 444, 466, 514, 517, 656
BstX2I	RGATCY	2 cut(s)	44, 388
BstYI	RGATCY	2 cut(s)	44, 388
Bsu15I	ATCGAT	2 cut(s)	242, 625
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	486
BsuTUI	ATCGAT	2 cut(s)	242, 625
BtsI	GCAGTG	2 cut(s)	233, 467
BtsIMutI	CAGTG	3 cut(s)	233, 467, 501
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	212, 394, 484
ClaI	ATCGAT	2 cut(s)	242, 625
CviAII	CATG	6 cut(s)	80, 134, 235, 398, 406, 449
DdeI	CTNAG	2 cut(s)	253, 553
DpnI	GATC	3 cut(s)	46, 245, 390
DpnII	GATC	3 cut(s)	44, 243, 388
DraI	TTTAAA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	212, 394
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	6 cut(s)	83, 137, 238, 401, 409, 452
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	6 cut(s)	79, 133, 234, 397, 405, 448
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	7 cut(s)	353, 455, 458, 528, 531, 558, 670
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	353, 455, 458, 528, 531, 558, 670
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	7 cut(s)	353, 455, 458, 528, 531, 558, 670
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	83, 137, 238, 401, 409, 452
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	105, 590
Hpy188III	TCNNGA	2 cut(s)	263, 392
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	4 cut(s)	209, 260, 549, 661
HpyCH4III	ACNGT	2 cut(s)	178, 496
HpyCH4V	TGCA	7 cut(s)	137, 226, 231, 238, 460, 533, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 454, 669
HpyF3I	CTNAG	2 cut(s)	253, 553
Hsp92II	CATG	6 cut(s)	83, 137, 238, 401, 409, 452
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	44, 243, 388
LmnI	GCTCC	2 cut(s)	89, 442
Lsp1109I	GCAGC	6 cut(s)	339, 444, 466, 514, 517, 656
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	108, 410, 490
MalI	GATC	3 cut(s)	46, 245, 390
MbiI	CCGCTC	1 cut(s)	418
MboI	GATC	3 cut(s)	44, 243, 388
MboII	GAAGA	1 cut(s)	231
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	44, 388
MhlI	GDGCHC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	84, 331, 642
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	457, 557
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	375, 454, 669
NdeII	GATC	3 cut(s)	44, 243, 388
NlaIII	CATG	6 cut(s)	83, 137, 238, 401, 409, 452
NlaIV	GGNNCC	4 cut(s)	46, 85, 213, 485
NmuCI	GTSAC	2 cut(s)	108, 410
NspI	RCATGY	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	202
PaeI	GCATGC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	7 cut(s)	354, 456, 459, 529, 532, 559, 671
PsiI	TTATAA	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	46, 85, 213, 485
PspPI	GGNCC	3 cut(s)	212, 394, 484
PstI	CTGCAG	2 cut(s)	462, 535
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	44, 388
PvuII	CAGCTG	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	7 cut(s)	353, 455, 458, 528, 531, 558, 670
Sau3AI	GATC	3 cut(s)	44, 243, 388
Sau96I	GGNCC	3 cut(s)	212, 394, 484
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	8 cut(s)	154, 192, 323, 354, 371, 439, 459, 671
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	458, 531
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	2 cut(s)	212, 394
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
SphI	GCATGC	1 cut(s)	137
SsiI	CCGC	2 cut(s)	416, 557
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	178, 496
TaqI	TCGA	3 cut(s)	202, 242, 625
TauI	GCSGC	1 cut(s)	560
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	3 cut(s)	233, 467, 501
TseFI	GTSAC	2 cut(s)	108, 410
TseI	GCWGC	6 cut(s)	352, 454, 457, 527, 530, 669
Tsp45I	GTSAC	2 cut(s)	108, 410
TspDTI	ATGAA	2 cut(s)	30, 137
TspRI	CASTG	3 cut(s)	233, 467, 501
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	2 cut(s)	212, 394
XapI	RAATTY	3 cut(s)	124, 475, 511
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.