Rmu_sc0013354.1_g000013

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013354.1
Physical Location & Seq
Reverse (-)
39949 .. 41549
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013354.1_g000013.1.cds

Sequence Viewer

Length: 1257 bp
atgtcactgaaaagcataatccgcgatctctggatcataagagatgagatgaggaagaagaagaagcccaagcctggaggggcagagagaaagcagatgcgtcgtcgccgaaccaaagcatatattgcacctgaacagccattctcattgccatcaactgtgcggcagagtcaatgggcagacatgcctcctgagttgcttcatgacataatccaacgcgtggaagaagccgagatctcctggcctgctcggagggacgtcgttgcttgtgcttcggtttgcagatcatggagggagattacaaaggacattgtcaagactccggagcaatgtggcttgcttaccttccccatctcactgaagcagccggggccgagagattctctgatccagtgctttattcagagggaaagagaaacttcgacatatcgcctgtttcttggtctaagccctgctctctccggggacatgagtaagctactgttgacagcaaggaaaattagacgggcaacaagtacagagtttgtgatatccttggctgcagatgatttctctcgagcaagcaatacttatgtcggaaaactaaggtctaattttctgggatccaagtttaccatctatgatagtcagcctccacatggcgccccaatccaaacaaatcagaagtcacataaaaaaatgaattcaaagcatgcaatttcaaggatacctgccggtagttataatgttgctacggtatcttatgagctcaatatccttcgaacaaggggaccaagaagaatgcagtgcatcatgcaatcaatccccatctcagcagttcaggaagggggtgttgcgcctactccaactgatttaaaagattgtctaaatcagcaaacctccctgtcaccagtttcacaaggaaagaagctgcttgataatttgagctgtggtagccccagactggatctggagcatgatgacatgagtgacccgctcattttgaaaaacaaagctcctagatggcatgagcagctgcagtgttggtgtctaaattttaggggccgtgttacagtggcttcggtaaagaatttccaattggtggctgctgcagagccttctcagaatgtctcagcagctgaacaagagaaagtaatactgcaattcgggaaaattggtaaagacattttcacaatggattatcgataccctctctctactttccaagccttcgcaatttgcttgagctgctttgacacaaaaccagcctgtgaatga

Protein Analysis

418

Amino Acids

47.2

Weight (kDa)

9.59

Isoelectric Point (pI)

55.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 2 cut(s) 220, 1081
AccBSI CCGCTC 1 cut(s) 976
AccII CGCG 2 cut(s) 24, 219
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 3 cut(s) 22, 163, 974
AclWI GGATC 5 cut(s) 41, 382, 597, 610, 954
AcsI RAATTY 3 cut(s) 682, 1033, 1069
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 2 cut(s) 258, 642
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 5 cut(s) 74, 220, 638, 943, 1081
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 3 cut(s) 687, 702, 985
AjnI CCWGG 2 cut(s) 73, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AluBI AGCT 8 cut(s) 478, 748, 910, 927, 995, 1015, 1118, 1227
AluI AGCT 8 cut(s) 478, 748, 910, 927, 995, 1015, 1118, 1227
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 1114
AlwI GGATC 5 cut(s) 41, 382, 597, 610, 954
AlwNI CAGNNNCTG 1 cut(s) 1118
Ama87I CYCGRG 1 cut(s) 555
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 3 cut(s) 242, 371, 1042
ApeKI GCWGC 9 cut(s) 364, 539, 910, 1012, 1015, 1085, 1088, 1115, 1227
ApoI RAATTY 3 cut(s) 682, 1033, 1069
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AspLEI GCGC 2 cut(s) 644, 838
AspS9I GGNCC 3 cut(s) 371, 770, 1042
AsuC2I CCSGG 2 cut(s) 369, 463
AsuHPI GGTGA 1 cut(s) 879
AsuII TTCGAA 1 cut(s) 760
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 770
BamHI GGATCC 1 cut(s) 602
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 9 cut(s) 376, 526, 897, 1002, 1024, 1072, 1075, 1127, 1214
BccI CCATC 5 cut(s) 160, 359, 623, 815, 996
BceAI ACGGC 1 cut(s) 1029
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 75, 241
BciVI GTATCC 1 cut(s) 699
BcnI CCSGG 2 cut(s) 369, 463
BcoDI GTCTC 1 cut(s) 1114
BfaI CTAG 1 cut(s) 999
BfmI CTRYAG 3 cut(s) 540, 1016, 1089
BfoI RGCGCY 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 718
BfuI GTATCC 1 cut(s) 699
BglII AGATCT 1 cut(s) 234
Bme1390I CCNGG 4 cut(s) 75, 241, 369, 463
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 3 cut(s) 371, 770, 1042
BmiI GGNNCC 5 cut(s) 372, 604, 643, 771, 1043
BmrFI CCNGG 4 cut(s) 75, 241, 369, 463
BmsI GCATC 2 cut(s) 87, 798
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 2 cut(s) 96, 971
Bpu14I TTCGAA 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 1243
BpuMI CCSGG 2 cut(s) 369, 463
Bsa29I ATCGAT 1 cut(s) 1183
BsaHI GRCGYC 2 cut(s) 258, 642
BsaJI CCNNGG 3 cut(s) 368, 462, 534
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 220, 638, 943, 1081
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 3 cut(s) 391, 890, 948
Bse3DI GCAATG 2 cut(s) 146, 335
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 75, 241
BseCI ATCGAT 1 cut(s) 1183
BseDI CCNNGG 3 cut(s) 368, 462, 534
BseLI CCNNNNNNNGG 5 cut(s) 74, 220, 638, 943, 1081
BseMI GCAATG 2 cut(s) 146, 335
BseMII CTCAG 4 cut(s) 183, 825, 1115, 1125
BseNI ACTGG 3 cut(s) 391, 890, 948
BseXI GCAGC 9 cut(s) 376, 526, 897, 1002, 1024, 1072, 1075, 1127, 1214
Bsh1236I CGCG 2 cut(s) 24, 219
BshFI GGCC 3 cut(s) 244, 373, 1044
BshNI GGYRCC 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 1183
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 4 cut(s) 323, 368, 462, 714
BslFI GGGAC 3 cut(s) 269, 479, 783
BslI CCNNNNNNNGG 5 cut(s) 74, 220, 638, 943, 1081
BsmAI GTCTC 1 cut(s) 1114
BsmFI GGGAC 3 cut(s) 269, 479, 783
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 3 cut(s) 244, 373, 1044
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 750
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
BspACI CCGC 3 cut(s) 22, 163, 974
BspANI GGCC 3 cut(s) 244, 373, 1044
BspCNI CTCAG 4 cut(s) 184, 824, 1114, 1124
BspDI ATCGAT 1 cut(s) 1183
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 2 cut(s) 24, 219
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 5 cut(s) 372, 604, 643, 771, 1043
BspMAI CTGCAG 3 cut(s) 544, 1020, 1093
BspMI ACCTGC 1 cut(s) 718
BspPI GGATC 5 cut(s) 41, 382, 597, 610, 954
BspT104I TTCGAA 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 976
BsrDI GCAATG 2 cut(s) 146, 335
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 3 cut(s) 391, 890, 948
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 3 cut(s) 368, 462, 534
BssMI GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
BssNI GRCGYC 2 cut(s) 258, 642
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 2 cut(s) 75, 241
Bst4CI ACNGT 4 cut(s) 160, 483, 736, 1054
BstACI GRCGYC 2 cut(s) 258, 642
BstAPI GCANNNNNTGC 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 4 cut(s) 246, 338, 562, 693
BstDEI CTNAG 6 cut(s) 192, 446, 584, 811, 1101, 1111
BstFNI CGCG 2 cut(s) 24, 219
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 644, 838
BstKTI GATC 7 cut(s) 28, 36, 237, 287, 390, 605, 949
BstMAI GTCTC 1 cut(s) 1114
BstMBI GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
BstMWI GCNNNNNNNGC 6 cut(s) 21, 125, 370, 933, 1012, 1227
BstNI CCWGG 2 cut(s) 75, 241
BstNSI RCATGY 2 cut(s) 187, 695
BstSCI CCNGG 4 cut(s) 73, 239, 367, 461
BstSFI CTRYAG 3 cut(s) 540, 1016, 1089
BstUI CGCG 2 cut(s) 24, 219
BstV1I GCAGC 9 cut(s) 376, 526, 897, 1002, 1024, 1072, 1075, 1127, 1214
BstX2I RGATCY 3 cut(s) 234, 602, 946
BstYI RGATCY 3 cut(s) 234, 602, 946
Bsu15I ATCGAT 1 cut(s) 1183
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 3 cut(s) 244, 373, 1044
BsuTUI ATCGAT 1 cut(s) 1183
BtsI GCAGTG 2 cut(s) 791, 1025
BtsIMutI CAGTG 6 cut(s) 5, 356, 398, 791, 1025, 1059
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 4 cut(s) 246, 338, 562, 693
CaiI CAGNNNCTG 1 cut(s) 1118
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 644, 838
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 3 cut(s) 371, 770, 1042
ClaI ATCGAT 1 cut(s) 1183
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 516
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 6 cut(s) 192, 446, 584, 811, 1101, 1111
DinI GGCGCC 1 cut(s) 643
DpnI GATC 7 cut(s) 27, 35, 236, 286, 389, 604, 948
DpnII GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
DraI TTTAAA 1 cut(s) 855
Ecl136II GAGCTC 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 750
Eco32I GATATC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 73, 239
EcoRV GATATC 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 750
EgeI GGCGCC 1 cut(s) 643
EheI GGCGCC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 534
FalI AAGNNNNNCTT 4 cut(s) 403, 435, 553, 585
FaqI GGGAC 3 cut(s) 269, 479, 783
FauI CCCGC 1 cut(s) 981
FriOI GRGCYC 1 cut(s) 750
FspBI CTAG 1 cut(s) 999
GlaI GCGC 2 cut(s) 643, 837
GsuI CTGGAG 2 cut(s) 96, 971
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 3 cut(s) 244, 373, 1044
HapII CCGG 4 cut(s) 323, 368, 462, 714
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 644, 838
Hin1I GRCGYC 2 cut(s) 258, 642
Hin6I GCGC 2 cut(s) 642, 836
HinP1I GCGC 2 cut(s) 642, 836
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 3 cut(s) 169, 319, 380
HpaII CCGG 4 cut(s) 323, 368, 462, 714
HphI GGTGA 1 cut(s) 879
Hpy166II GTNNAC 2 cut(s) 486, 612
Hpy188I TCNGA 6 cut(s) 252, 387, 405, 578, 663, 1104
Hpy188III TCNNGA 9 cut(s) 31, 191, 203, 316, 323, 555, 821, 950, 1147
Hpy8I GTNNAC 2 cut(s) 486, 612
Hpy99I CGWCG 3 cut(s) 105, 108, 263
HpyAV CCTTC 5 cut(s) 355, 767, 818, 1107, 1219
HpyCH4III ACNGT 4 cut(s) 160, 483, 736, 1054
HpyCH4IV ACGT 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 125, 370, 933, 1012, 1227
HpyF3I CTNAG 6 cut(s) 192, 446, 584, 811, 1101, 1111
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 2 cut(s) 258, 642
HspAI GCGC 2 cut(s) 642, 836
KasI GGCGCC 1 cut(s) 641
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
LmnI GCTCC 3 cut(s) 325, 952, 1000
Lsp1109I GCAGC 9 cut(s) 376, 526, 897, 1002, 1024, 1072, 1075, 1127, 1214
LweI GCATC 2 cut(s) 87, 798
MaeI CTAG 1 cut(s) 999
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 5 cut(s) 3, 666, 885, 968, 1048
MalI GATC 7 cut(s) 27, 35, 236, 286, 389, 604, 948
MbiI CCGCTC 1 cut(s) 976
MboI GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
MboII GAAGA 5 cut(s) 67, 70, 73, 236, 789
MfeI CAATTG 1 cut(s) 1076
MflI RGATCY 3 cut(s) 234, 602, 946
MhlI GDGCHC 1 cut(s) 750
MluI ACGCGT 1 cut(s) 217
Mly113I GGCGCC 1 cut(s) 642
MlyI GAGTC 2 cut(s) 178, 313
MmeI TCCRAC 3 cut(s) 238, 556, 869
MnlI CCTC 9 cut(s) 45, 71, 198, 246, 285, 399, 642, 889, 1200
MroI TCCGGA 1 cut(s) 322
MseI TTAA 1 cut(s) 854
MspA1I CMGCKG 2 cut(s) 1015, 1118
MspI CCGG 4 cut(s) 323, 368, 462, 714
MspR9I CCNGG 4 cut(s) 75, 241, 369, 463
MunI CAATTG 1 cut(s) 1076
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 2 cut(s) 75, 241
MvnI CGCG 2 cut(s) 24, 219
MwoI GCNNNNNNNGC 6 cut(s) 21, 125, 370, 933, 1012, 1227
NarI GGCGCC 1 cut(s) 642
NciI CCSGG 2 cut(s) 369, 463
NdeII GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
NlaIV GGNNCC 5 cut(s) 372, 604, 643, 771, 1043
NmeAIII GCCGAG 2 cut(s) 256, 399
NmuCI GTSAC 4 cut(s) 3, 666, 885, 968
NspI RCATGY 2 cut(s) 187, 695
NspV TTCGAA 1 cut(s) 760
PaeI GCATGC 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 555
PagI TCATGA 1 cut(s) 202
PctI GAATGC 1 cut(s) 786
PfeI GAWTC 1 cut(s) 380
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 2 cut(s) 220, 1081
PleI GAGTC 2 cut(s) 177, 313
PluTI GGCGCC 1 cut(s) 645
PpsI GAGTC 2 cut(s) 177, 313
PsiI TTATAA 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 73, 239
PspGI CCWGG 2 cut(s) 73, 239
PspN4I GGNNCC 5 cut(s) 372, 604, 643, 771, 1043
PspPI GGNCC 3 cut(s) 371, 770, 1042
PstI CTGCAG 3 cut(s) 544, 1020, 1093
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 3 cut(s) 234, 602, 946
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 2 cut(s) 1015, 1118
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SacI GAGCTC 1 cut(s) 750
SaqAI TTAA 1 cut(s) 854
Sau3AI GATC 7 cut(s) 25, 33, 234, 284, 387, 602, 946
Sau96I GGNCC 3 cut(s) 371, 770, 1042
SchI GAGTC 2 cut(s) 178, 313
ScrFI CCNGG 4 cut(s) 75, 241, 369, 463
SduI GDGCHC 1 cut(s) 750
SfaNI GCATC 2 cut(s) 87, 798
SfcI CTRYAG 3 cut(s) 540, 1016, 1089
SfoI GGCGCC 1 cut(s) 643
Sfr274I CTCGAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 760
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 555, 1222
SmoI CTYRAG 2 cut(s) 555, 1222
SphI GCATGC 1 cut(s) 695
SsiI CCGC 3 cut(s) 22, 163, 974
SspDI GGCGCC 1 cut(s) 641
SspMI CTAG 1 cut(s) 999
SstI GAGCTC 1 cut(s) 750
StyD4I CCNGG 4 cut(s) 73, 239, 367, 461
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 160, 483, 736, 1054
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 422, 556, 760, 1183
TatI WGTACW 1 cut(s) 515
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 6 cut(s) 12, 363, 398, 791, 1025, 1059
TseFI GTSAC 4 cut(s) 3, 666, 885, 968
TseI GCWGC 9 cut(s) 364, 539, 910, 1012, 1015, 1085, 1088, 1115, 1227
Tsp45I GTSAC 4 cut(s) 3, 666, 885, 968
TspDTI ATGAA 2 cut(s) 191, 695
TspRI CASTG 6 cut(s) 12, 363, 398, 791, 1025, 1059
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 2 cut(s) 220, 1081
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 3 cut(s) 682, 1033, 1069
XceI RCATGY 2 cut(s) 187, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 555
XspI CTAG 1 cut(s) 999
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.