Rh6BG423000

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
64553892 .. 64555520
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG423000.1

Sequence Viewer

Length: 1278 bp
ATGTCATTGAAAAGCATAATCCGCGATCTCGGGATCATAAGAGATGAGATGAGGAAGAAGAAGAAGAAGCCCAAGCCCAAGCCTGGAGGGGCAGAAGAGAGAAAGCAGATGCGTCGTCGTCGCCGAAGCAAAGCATATATTGCACCTGAACAGCCATTTTCATTGCCATCAACTTCAACTGTGCCGCAGAGTCAATGGGCAGACATGCCTCCTGAGTTGCTTCATGACATAATCCAACGCGTGGAACAAGCCGAGATCTCCTGGCCTGCTCGGAGGGATGTCGTTGCTTGTGCTTCCGTTTGCAGATCATGGAGGGAGATTACAAACGAGATTGTCAAGACTCCCGAGCAATGTGGCTTGCTTACCTTCCCCATCTCACTCAAGCAGCCGGGGCCGAGAGATTCTCTGATCCAGTGCTTTATTCAGAGGGAAAGAGAAACTTCGACATATCGCCTGTTTCTTGGTCTAAGCCCTGCTCTCTCCGGAGACATGAGTAAGCTACTGTTGACAGCAAGGAAAATTAGACGGGCAACAAGTACAGAGTTTGTGATATCCTTGGCTGCGGATGATTTCTCTCGAGCAAGCAGTACTTATGTCGGAAAACTAAGGTCTAATTTTCTGGGATCCAAGTTTACCATATATGATAGTCAGCCTCCACATGGCTCTCCAATCCAAACAAATCAGAAGTCACATAAAAAAATGAATTCAAAGCATGCAATTTCAAGGATACCTGCCGGTAGTTATAATGTTGCTACAGTATCTTATGAGCTCAATATCCTTCGAACAAGGGGACCAAGAAGAATGCAGTGCGTCATGCAATCAATCCCCATCTCAGCAGTTCAGGAAGGGGGTGTTGCGCCTACTCCAACTGATTTAAAAGATTGTCTAAATCAGCAAACCTCTCTGTCGCCAGTTTCACAAGGAAAGAAGCTGCTTGATAATTTGAGCTGTGGTAGCCCCAGACTGGATCTGGAGCATGATGACATGAGTGATCCGCTCATTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAGTGTTGGTGTCTAAATTTTAGGGGCCGTGTTACAGTGGCTTCGGTAAAGAATTTCCAATTGGTGGCTGCTGCAGAGCCTTCCCAGAATGTCTCAGCAGCTGAACAAGAGAAAGTAATACTGCAATTCGGGAAAATTGGTACAGACATTTTCACAATGGATTATCGATACCCTCTCTCTACTTTCCAAGCCTTCGCAATTTGCTTGAGCTGCTTTGACACAAAACCAGCCTGTGAATGA

Protein Analysis

425

Amino Acids

47.77

Weight (kDa)

9.59

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 66 - 110 2e-06 F-box-like
Tub PF01167 127 - 420 1.3e-102 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
Acc36I ACCTGC 1 cut(s) 739
AccB7I CCANNNNNTGG 2 cut(s) 241, 1102
AccBSI CCGCTC 1 cut(s) 997
AccII CGCG 2 cut(s) 24, 240
AccIII TCCGGA 1 cut(s) 482
AciI CCGC 4 cut(s) 22, 185, 563, 995
AclWI GGATC 6 cut(s) 41, 403, 618, 631, 975, 986
AcsI RAATTY 3 cut(s) 703, 1054, 1090
AfaI GTAC 3 cut(s) 538, 589, 1180
AfiI CCNNNNNNNGG 5 cut(s) 83, 241, 659, 964, 1102
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 5 cut(s) 10, 177, 708, 723, 1006
AjnI CCWGG 2 cut(s) 82, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AluBI AGCT 8 cut(s) 499, 769, 931, 948, 1016, 1036, 1139, 1248
AluI AGCT 8 cut(s) 499, 769, 931, 948, 1016, 1036, 1139, 1248
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 2 cut(s) 480, 1135
AlwI GGATC 6 cut(s) 41, 403, 618, 631, 975, 986
AlwNI CAGNNNCTG 1 cut(s) 1139
Ama87I CYCGRG 3 cut(s) 29, 344, 576
Aor13HI TCCGGA 1 cut(s) 482
AoxI GGCC 3 cut(s) 263, 392, 1063
ApeKI GCWGC 9 cut(s) 385, 560, 931, 1033, 1036, 1106, 1109, 1136, 1248
ApoI RAATTY 3 cut(s) 703, 1054, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 3 cut(s) 392, 791, 1063
AsuC2I CCSGG 1 cut(s) 390
AsuII TTCGAA 1 cut(s) 781
AvaI CYCGRG 3 cut(s) 29, 344, 576
AvaII GGWCC 1 cut(s) 791
BamHI GGATCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 9 cut(s) 397, 547, 918, 1023, 1045, 1093, 1096, 1148, 1235
BccI CCATC 4 cut(s) 175, 380, 836, 1017
BceAI ACGGC 1 cut(s) 1050
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 2 cut(s) 84, 262
BciVI GTATCC 1 cut(s) 720
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 480, 1135
BfaI CTAG 1 cut(s) 1020
BfmI CTRYAG 3 cut(s) 753, 1037, 1110
BfuAI ACCTGC 1 cut(s) 739
BfuI GTATCC 1 cut(s) 720
BglII AGATCT 1 cut(s) 255
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 3 cut(s) 84, 262, 390
Bme18I GGWCC 1 cut(s) 791
BmeT110I CYCGRG 3 cut(s) 29, 344, 576
BmgT120I GGNCC 3 cut(s) 392, 791, 1063
BmiI GGNNCC 4 cut(s) 393, 625, 792, 1064
BmrFI CCNGG 3 cut(s) 84, 262, 390
BmsI GCATC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 388, 420
BpmI CTGGAG 2 cut(s) 105, 992
Bpu14I TTCGAA 1 cut(s) 781
BpuEI CTTGAG 2 cut(s) 365, 1264
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 1204
BsaJI CCNNGG 2 cut(s) 389, 555
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 241, 659, 964, 1102
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 3 cut(s) 412, 911, 969
Bse3DI GCAATG 2 cut(s) 161, 356
BseAI TCCGGA 1 cut(s) 482
BseBI CCWGG 2 cut(s) 84, 262
BseCI ATCGAT 1 cut(s) 1204
BseDI CCNNGG 2 cut(s) 389, 555
BseGI GGATG 2 cut(s) 283, 571
BseLI CCNNNNNNNGG 5 cut(s) 83, 241, 659, 964, 1102
BseMI GCAATG 2 cut(s) 161, 356
BseMII CTCAG 3 cut(s) 204, 846, 1146
BseNI ACTGG 3 cut(s) 412, 911, 969
BseXI GCAGC 9 cut(s) 397, 547, 918, 1023, 1045, 1093, 1096, 1148, 1235
Bsh1236I CGCG 2 cut(s) 24, 240
BshFI GGCC 3 cut(s) 265, 394, 1065
BshVI ATCGAT 1 cut(s) 1204
BsiHKAI GWGCWC 1 cut(s) 771
BsiHKCI CYCGRG 3 cut(s) 29, 344, 576
BsiSI CCGG 3 cut(s) 389, 483, 735
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 5 cut(s) 83, 241, 659, 964, 1102
BsmAI GTCTC 2 cut(s) 480, 1135
BsmFI GGGAC 1 cut(s) 804
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 3 cut(s) 265, 394, 1065
BsoBI CYCGRG 3 cut(s) 29, 344, 576
Bsp119I TTCGAA 1 cut(s) 781
Bsp1286I GDGCHC 1 cut(s) 771
Bsp13I TCCGGA 1 cut(s) 482
Bsp143I GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
BspACI CCGC 4 cut(s) 22, 185, 563, 995
BspANI GGCC 3 cut(s) 265, 394, 1065
BspCNI CTCAG 3 cut(s) 205, 845, 1145
BspDI ATCGAT 1 cut(s) 1204
BspEI TCCGGA 1 cut(s) 482
BspFNI CGCG 2 cut(s) 24, 240
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 4 cut(s) 393, 625, 792, 1064
BspMAI CTGCAG 2 cut(s) 1041, 1114
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 6 cut(s) 41, 403, 618, 631, 975, 986
BspT104I TTCGAA 1 cut(s) 781
BsrBI CCGCTC 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 161, 356
BsrFI RCCGGY 1 cut(s) 734
BsrI ACTGG 3 cut(s) 412, 911, 969
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 389, 555
BssMI GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 84, 262
Bst4CI ACNGT 4 cut(s) 181, 504, 757, 1075
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 4 cut(s) 267, 359, 583, 714
BstDEI CTNAG 5 cut(s) 213, 467, 605, 832, 1132
BstF5I GGATG 2 cut(s) 283, 571
BstFNI CGCG 2 cut(s) 24, 240
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 8 cut(s) 28, 36, 258, 308, 411, 626, 970, 994
BstMAI GTCTC 2 cut(s) 480, 1135
BstMBI GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
BstMWI GCNNNNNNNGC 6 cut(s) 21, 140, 391, 954, 1033, 1248
BstNI CCWGG 2 cut(s) 84, 262
BstNSI RCATGY 2 cut(s) 208, 716
BstSCI CCNGG 3 cut(s) 82, 260, 388
BstSFI CTRYAG 3 cut(s) 753, 1037, 1110
BstUI CGCG 2 cut(s) 24, 240
BstV1I GCAGC 9 cut(s) 397, 547, 918, 1023, 1045, 1093, 1096, 1148, 1235
BstX2I RGATCY 3 cut(s) 255, 623, 967
BstYI RGATCY 3 cut(s) 255, 623, 967
Bsu15I ATCGAT 1 cut(s) 1204
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 3 cut(s) 265, 394, 1065
BsuTUI ATCGAT 1 cut(s) 1204
BtsCI GGATG 2 cut(s) 283, 571
BtsI GCAGTG 2 cut(s) 812, 1046
BtsIMutI CAGTG 4 cut(s) 419, 812, 1046, 1080
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 4 cut(s) 267, 359, 583, 714
CaiI CAGNNNCTG 1 cut(s) 1139
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 3 cut(s) 392, 791, 1063
ClaI ATCGAT 1 cut(s) 1204
CseI GACGC 2 cut(s) 101, 799
Csp6I GTAC 3 cut(s) 537, 588, 1179
CviQI GTAC 3 cut(s) 537, 588, 1179
DdeI CTNAG 5 cut(s) 213, 467, 605, 832, 1132
DpnI GATC 8 cut(s) 27, 35, 257, 307, 410, 625, 969, 993
DpnII GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
DraI TTTAAA 1 cut(s) 876
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 771
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 791
Eco53kI GAGCTC 1 cut(s) 769
Eco88I CYCGRG 3 cut(s) 29, 344, 576
EcoICRI GAGCTC 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 82, 260
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 1 cut(s) 555
FalI AAGNNNNNCTT 4 cut(s) 424, 456, 574, 606
FaqI GGGAC 1 cut(s) 804
FokI GGATG 2 cut(s) 290, 578
FriOI GRGCYC 1 cut(s) 771
FspBI CTAG 1 cut(s) 1020
GlaI GCGC 1 cut(s) 858
GsuI CTGGAG 2 cut(s) 105, 992
HaeIII GGCC 3 cut(s) 265, 394, 1065
HapII CCGG 3 cut(s) 389, 483, 735
HgaI GACGC 2 cut(s) 101, 799
HhaI GCGC 1 cut(s) 859
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 3 cut(s) 190, 340, 401
HpaII CCGG 3 cut(s) 389, 483, 735
Hpy166II GTNNAC 2 cut(s) 507, 633
Hpy188I TCNGA 5 cut(s) 273, 408, 426, 599, 684
Hpy8I GTNNAC 2 cut(s) 507, 633
Hpy99I CGWCG 3 cut(s) 117, 120, 123
HpyAV CCTTC 5 cut(s) 376, 788, 839, 1128, 1240
HpyCH4III ACNGT 4 cut(s) 181, 504, 757, 1075
HpyCH4V TGCA 8 cut(s) 143, 303, 716, 805, 817, 1039, 1112, 1162
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 140, 391, 954, 1033, 1248
HpyF3I CTNAG 5 cut(s) 213, 467, 605, 832, 1132
HspAI GCGC 1 cut(s) 857
Kpn2I TCCGGA 1 cut(s) 482
Kzo9I GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
LmnI GCTCC 2 cut(s) 973, 1021
Lsp1109I GCAGC 9 cut(s) 397, 547, 918, 1023, 1045, 1093, 1096, 1148, 1235
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 1020
MaeIII GTNAC 2 cut(s) 687, 1069
MalI GATC 8 cut(s) 27, 35, 257, 307, 410, 625, 969, 993
MbiI CCGCTC 1 cut(s) 997
MboI GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
MboII GAAGA 6 cut(s) 67, 70, 73, 76, 107, 810
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 3 cut(s) 255, 623, 967
MhlI GDGCHC 1 cut(s) 771
MluI ACGCGT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 199, 334
MmeI TCCRAC 3 cut(s) 259, 577, 890
MnlI CCTC 9 cut(s) 45, 80, 219, 267, 306, 420, 663, 910, 1221
MroI TCCGGA 1 cut(s) 482
MseI TTAA 1 cut(s) 875
MspA1I CMGCKG 2 cut(s) 1036, 1139
MspI CCGG 3 cut(s) 389, 483, 735
MspR9I CCNGG 3 cut(s) 84, 262, 390
MunI CAATTG 1 cut(s) 1097
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 2 cut(s) 84, 262
MvnI CGCG 2 cut(s) 24, 240
MwoI GCNNNNNNNGC 6 cut(s) 21, 140, 391, 954, 1033, 1248
NciI CCSGG 1 cut(s) 390
NdeII GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
NlaIV GGNNCC 4 cut(s) 393, 625, 792, 1064
NmeAIII GCCGAG 2 cut(s) 277, 420
NmuCI GTSAC 1 cut(s) 687
NspI RCATGY 2 cut(s) 208, 716
NspV TTCGAA 1 cut(s) 781
PaeI GCATGC 1 cut(s) 716
PaeR7I CTCGAG 1 cut(s) 576
PagI TCATGA 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 1 cut(s) 807
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 2 cut(s) 241, 1102
PleI GAGTC 2 cut(s) 198, 334
PpsI GAGTC 2 cut(s) 198, 334
PsiI TTATAA 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 82, 260
PspGI CCWGG 2 cut(s) 82, 260
PspN4I GGNNCC 4 cut(s) 393, 625, 792, 1064
PspPI GGNCC 3 cut(s) 392, 791, 1063
PstI CTGCAG 2 cut(s) 1041, 1114
PstNI CAGNNNCTG 1 cut(s) 1139
PsuI RGATCY 3 cut(s) 255, 623, 967
PvuII CAGCTG 2 cut(s) 1036, 1139
RsaI GTAC 3 cut(s) 538, 589, 1180
RsaNI GTAC 3 cut(s) 537, 588, 1179
SacI GAGCTC 1 cut(s) 771
SaqAI TTAA 1 cut(s) 875
Sau3AI GATC 8 cut(s) 25, 33, 255, 305, 408, 623, 967, 991
Sau96I GGNCC 3 cut(s) 392, 791, 1063
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 2 cut(s) 199, 334
ScrFI CCNGG 3 cut(s) 84, 262, 390
SduI GDGCHC 1 cut(s) 771
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 3 cut(s) 753, 1037, 1110
Sfr274I CTCGAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 3 cut(s) 380, 576, 1243
SmoI CTYRAG 3 cut(s) 380, 576, 1243
SphI GCATGC 1 cut(s) 716
SsiI CCGC 4 cut(s) 22, 185, 563, 995
SspMI CTAG 1 cut(s) 1020
SstI GAGCTC 1 cut(s) 771
StyD4I CCNGG 3 cut(s) 82, 260, 388
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 181, 504, 757, 1075
TaqI TCGA 4 cut(s) 443, 577, 781, 1204
TatI WGTACW 2 cut(s) 536, 587
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 875
Tru9I TTAA 1 cut(s) 875
TscAI CASTG 4 cut(s) 419, 812, 1046, 1080
TseFI GTSAC 1 cut(s) 687
TseI GCWGC 9 cut(s) 385, 560, 931, 1033, 1036, 1106, 1109, 1136, 1248
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 3 cut(s) 150, 212, 716
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 4 cut(s) 419, 812, 1046, 1080
Van91I CCANNNNNTGG 2 cut(s) 241, 1102
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 3 cut(s) 703, 1054, 1090
XceI RCATGY 2 cut(s) 208, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 967
XhoI CTCGAG 1 cut(s) 576
XspI CTAG 1 cut(s) 1020
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.