Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008298

Physical Location & Seq

Genomic Coordinates Forward (+)

2169638 .. 2171367

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1029900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGAGATGACAAGGGGAAGAAATCAAGAAGAGGAGGGGAAGAGAGGAAGCACACGCGCCGCCGAGCTAAATCTCACATTGCCCCAGAGCATACGTTGTCATCACCTGCATCAGTTGAGCAAAGCAAGTGGGCAAACTTGCCCCCAGAGTTGCTTCTTGACATAATCCAACGCGTCGAAGAGAGTGAGACTTCCTGGCCTGCTCGGAGAGATGTGATTGCTTGTGCTTCGGTTTGCAAGTCATGGAGGGAGATTACGAAAGAGATAGTCAAGACTCCTGAGCAATGTGGCTGGCTTACCTTCCCTGTCTCACTCAAGCAGCCGGGACCAAGAGATCATCCGATCCAATGCTTTATTAAGAGGGAAAGAGAAACTTCAACGTATCTACTGTACCTTGGTCTTAGCCCCGCTCTGTGTGGGGATGTGAGTAAGTTATTGCTGGCAGCAAGAAAGGTCAGAAGGGCAGCAAGTACACATTTTGTGGTGTCCTTGGCTGCAGATGAATTCTCTCGAGCAAGCAATTCTTACGTTGGAAAACTAAGGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009555 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Tub

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

9.8

Isoelectric Point (pI)

59.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	44 - 87	1.7e-07	F-box-like
Tub	PF01167	105 - 182	2.3e-21	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47270 AT1G47270 AT1G47270
fragaria_vesca	FvH4_2g39640 FvH4_2g39640
malus_domestica	MD08G1029900.v1.1 MD08G1030000.v1.1 MD15G1025400.v1.1
prunus_persica	Prupe.1G377700_v2.0.a1 Prupe.1G377700_v2.0.a1
pyrus_communis	pycom08g02380 pycom15g02180
rosa_chinensis	RchiOBHm_Chr6g0301261
rosa_laevigata	RLG00000011266
rosa_multiflora	Rmu_sc0013354.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441300 Rroxscaffold_7G00167020
rosa_rugosa	Rorug06G0302800
rosa_samantha	Rh6AG416300 Rh6BG423000 Rh6CG430600 Rh6DG416000
rosa_wichuraiana	Rw6G036040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	410
AccII	CGCG	2 cut(s)	58, 174
AciI	CCGC	2 cut(s)	61, 408
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	2 cut(s)	392, 472
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	68, 548
AluI	AGCT	2 cut(s)	68, 548
Alw26I	GTCTC	2 cut(s)	182, 313
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	319, 443, 464, 494
ApoI	RAATTY	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	331, 455, 476, 481
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	182, 313
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	5 cut(s)	61, 320, 444, 465, 495
BlsI	GCNGC	5 cut(s)	62, 321, 445, 466, 496
Bme1390I	CCNGG	2 cut(s)	196, 324
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	196, 324
BmsI	GCATC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	394, 489
Bse3DI	GCAATG	2 cut(s)	78, 290
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	394, 489
BseGI	GGATG	2 cut(s)	337, 427
BseMI	GCAATG	2 cut(s)	78, 290
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	331, 455, 476, 481
Bsh1236I	CGCG	2 cut(s)	58, 174
BshFI	GGCC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	182, 313
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	334, 342
BspACI	CCGC	2 cut(s)	61, 408
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	58, 174
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	78, 290
BssECI	CCNNGG	2 cut(s)	394, 489
BssMI	GATC	2 cut(s)	334, 342
BssT1I	CCWWGG	2 cut(s)	394, 489
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	3 cut(s)	25, 36, 174
BstC8I	GCNNGC	5 cut(s)	201, 293, 441, 517, 546
BstDEI	CTNAG	3 cut(s)	279, 401, 539
BstF5I	GGATG	2 cut(s)	337, 427
BstFNI	CGCG	2 cut(s)	58, 174
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	337, 345
BstMAI	GTCTC	2 cut(s)	182, 313
BstMBI	GATC	2 cut(s)	334, 342
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	194, 322
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	2 cut(s)	58, 174
BstV1I	GCAGC	4 cut(s)	331, 455, 476, 481
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	337, 427
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	5 cut(s)	201, 293, 441, 517, 546
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	391, 471
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	8 cut(s)	68, 199, 291, 295, 322, 405, 494, 548
CviKI_1	RGCY	8 cut(s)	68, 199, 291, 295, 322, 405, 494, 548
CviQI	GTAC	2 cut(s)	391, 471
DdeI	CTNAG	3 cut(s)	279, 401, 539
DpnI	GATC	2 cut(s)	336, 344
DpnII	GATC	2 cut(s)	334, 342
Eam1104I	CTCTTC	3 cut(s)	25, 36, 174
EarI	CTCTTC	3 cut(s)	25, 36, 174
Eco130I	CCWWGG	2 cut(s)	394, 489
Eco47I	GGWCC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	394, 489
ErhI	CCWWGG	2 cut(s)	394, 489
FaeI	CATG	1 cut(s)	246
FaiI	YATR	3 cut(s)	93, 164, 244
FalI	AAGNNNNNCTT	5 cut(s)	358, 390, 508, 540, 532
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	1 cut(s)	242
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	61, 320, 444, 465, 495
FokI	GGATG	2 cut(s)	324, 434
Fsp4HI	GCNGC	5 cut(s)	61, 320, 444, 465, 495
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	5 cut(s)	61, 320, 444, 465, 495
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	207, 342, 458
Hpy188III	TCNNGA	5 cut(s)	27, 158, 271, 278, 510
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	310, 453
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	3 cut(s)	95, 380, 528
HpyCH4V	TGCA	3 cut(s)	110, 237, 497
HpyF3I	CTNAG	3 cut(s)	279, 401, 539
HpySE526I	ACGT	3 cut(s)	95, 380, 528
Hsp92II	CATG	1 cut(s)	246
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	334, 342
Lsp1109I	GCAGC	4 cut(s)	331, 455, 476, 481
LweI	GCATC	1 cut(s)	119
MaeII	ACGT	3 cut(s)	95, 380, 528
MalI	GATC	2 cut(s)	336, 344
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	2 cut(s)	334, 342
MboII	GAAGA	4 cut(s)	31, 42, 53, 191
MluCI	AATT	2 cut(s)	503, 520
MluI	ACGCGT	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	193, 511
MnlI	CCTC	5 cut(s)	26, 29, 39, 240, 354
MseI	TTAA	2 cut(s)	357, 550
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	196, 324
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	2 cut(s)	58, 174
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	334, 342
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	510
PaqCI	CACCTGC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	62, 321, 445, 466, 496
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	499
RsaI	GTAC	2 cut(s)	392, 472
RsaNI	GTAC	2 cut(s)	391, 471
SaqAI	TTAA	2 cut(s)	357, 550
SatI	GCNGC	5 cut(s)	61, 320, 444, 465, 495
Sau3AI	GATC	2 cut(s)	334, 342
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	196, 324
SetI	ASST	9 cut(s)	70, 98, 109, 302, 383, 396, 456, 531, 550
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	314, 510
SmoI	CTYRAG	2 cut(s)	314, 510
Sse9I	AATT	2 cut(s)	503, 520
SsiI	CCGC	2 cut(s)	61, 408
StyD4I	CCNGG	2 cut(s)	194, 322
StyI	CCWWGG	2 cut(s)	394, 489
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	3 cut(s)	98, 383, 531
TaqI	TCGA	2 cut(s)	177, 511
TasI	AATT	2 cut(s)	503, 520
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	1 cut(s)	63
Tru1I	TTAA	2 cut(s)	357, 550
Tru9I	TTAA	2 cut(s)	357, 550
TseI	GCWGC	4 cut(s)	319, 443, 464, 494
TspDTI	ATGAA	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.