AT1G47330

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009069
Physical Location & Seq
Forward (+)
17351018 .. 17353875
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47330.2

Sequence Viewer

Length: 1584 bp
ATGTCATCGGATATTCCGTGCTGCGGAACCACGTTCTCGCTCTACGTCGTGATAATCATAGCTCTTGTAGCGTTCGCTGGCTTGATGGCTGGTTTAACTCTTGGTCTCATGTCTCTCGGTTTAGTCGACCTCGAAGTTCTCATCAAATCTGGCCGTCCTCAAGATCGAATCAACGCCGGTAAGATATTTCCAGTAGTGAAGAATCAGCATCTGTTGCTATGTACACTTTTGATCGGAAACTCTATGGCTATGGAGGCTTTACCAATATTTTTGGATAAAATTGTGCCTCCTTGGTTAGCTATTCTTCTTTCAGTGACTCTTATACTGGTGTTTGGAGAGATAATGCCACAAGCAGTTTGTACTCGATACGGGCTTAAGGTTGGAGCGATAATGGCTCCTTTTGTTCGTGTTCTTCTTGTACTGTTCTTCCCAATTTCATATCCAATCAGTAAGGTTCTTGATTGGATGTTGGGTAAGGGACATGGAGTTCTTTTACGGAGAGCAGAGCTAAAGACATTTGTGAATTTCCATGGAAATGAGGCTGGGAAAGGTGGAGATCTAACAACCGATGAGACTTCAATCATCACAGGTGCACTTGAATTAACTGAAAAGACGGCAAAAGATGCAATGACTCCCATATCGAATGCATTTTCCCTTGAGCTTGATACACCTCTTAATTTGGAAACTTTAAATACAATTATGTCAGTTGGTCATAGCAGAGTTCCAGTTTATTTCAGAAATCCCACACATATAATTGGGCTCATTCTGGTTAAAAATCTATTGGCAGTTGATGCCAGAAAGGAAGTTCCTCTGAGAAAAATGTCCATGAGAAAAATTCCACGTGTCTCTGAGACCATGCCACTATATGATATCTTAAACGAGTTCCAGAAGGGTCACAGTCACATAGCAGTTGTTTACAAGGATCTTGACGAGCAGGAGCAATCTCCCGAAACAAGTGAAAATGGTATTGAGCGCAGAAAAAACAAGAAAACGAAAGACGAACTTTTTAAGGACAGTTGTAGGAAACCAAAAGCTCAGTTTGAGGTATCGGAGAAGGAAGTATTCAAAATTGAAACCGGAGATGCAAAATCCGGCAAGAGTGAGAACGGTGAGGAGCAGCAAGGGTCAGGGAAAACAAGTCTATTGGCTGCTCCAGCTAAGAAGCGACATAGAGGCTGTTCGTTCTGCATTTTGGACATTGAGAATACTCCCATACCTGATTTTCCTACCAATGAGGAGGTTGTAGGAGTTATCACCATGGAGGATGTTATCGAAGAGCTTCTTCAGGAAGAGATCCTTGACGAAACCGATGAGTATGTGAACATCCACAACAGGATAAGAGTCAACATGCATGCTTCTCCAGAGAATCTACCAAGCGTGATAACCTCAATCACGCAATCATCATCGGGTTCCACTAGTCCCAACCAAACATCTCATATGGCCACACCAGATTCAAGTCCTACAACAAAACCATCAAATTCAAGTCCTACAAGAAAACCTTCAGTATCGAGTCCTACGAGAGAGCCTTCAGATTCTTCACACTCCATGGCTCCAAAACATGAAGAGTCCACCCAAACTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

527

Amino Acids

57.93

Weight (kDa)

5.96

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 2 - 99 6.6e-19 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 24
AclWI GGATC 2 cut(s) 930, 1288
AcoI YGGCCR 2 cut(s) 151, 1440
AcsI RAATTY 3 cut(s) 523, 834, 1477
AcuI CTGAAG 3 cut(s) 1268, 1485, 1512
AcvI CACGTG 1 cut(s) 842
AfaI GTAC 3 cut(s) 223, 361, 420
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 841
AgsI TTSAA 6 cut(s) 579, 599, 1066, 1073, 1455, 1482
AhlI ACTAGT 1 cut(s) 1415
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 7 cut(s) 62, 299, 508, 661, 1034, 1157, 1279
AluI AGCT 7 cut(s) 62, 299, 508, 661, 1034, 1157, 1279
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 5 cut(s) 110, 117, 566, 845, 850
Alw44I GTGCAC 1 cut(s) 591
AlwI GGATC 2 cut(s) 930, 1288
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 2 cut(s) 151, 1440
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 3 cut(s) 21, 1117, 1148
ApoI RAATTY 3 cut(s) 523, 834, 1477
Asp700I GAANNNNTTC 2 cut(s) 1278, 1498
AspLEI GCGC 1 cut(s) 975
AsuHPI GGTGA 2 cut(s) 1121, 1246
BaeGI GKGCMC 1 cut(s) 595
BalI TGGCCA 1 cut(s) 1442
BanII GRGCYC 1 cut(s) 762
BbrPI CACGTG 1 cut(s) 842
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 8, 1129, 1135
BccI CCATC 2 cut(s) 79, 1480
BceAI ACGGC 2 cut(s) 138, 630
BcoDI GTCTC 5 cut(s) 110, 117, 566, 845, 850
BcuI ACTAGT 1 cut(s) 1415
BfaI CTAG 1 cut(s) 1416
BfrI CTTAAG 1 cut(s) 374
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 22, 1118, 1149
BlsI GCNGC 3 cut(s) 23, 1119, 1150
BmiI GGNNCC 4 cut(s) 28, 396, 1411, 1551
BmsI GCATC 4 cut(s) 217, 613, 781, 1072
BpmI CTGGAG 2 cut(s) 1137, 1344
BpuEI CTTGAG 2 cut(s) 144, 677
BsaAI YACGTR 1 cut(s) 842
BsaI GGTCTC 2 cut(s) 110, 845
BsaJI CCNNGG 4 cut(s) 290, 529, 1257, 1545
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 191, 330, 725
Bse3DI GCAATG 1 cut(s) 633
BseDI CCNNGG 4 cut(s) 290, 529, 1257, 1545
BseGI GGATG 3 cut(s) 471, 1270, 1323
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 803, 840, 1049
BseNI ACTGG 3 cut(s) 191, 330, 725
BseRI GAGGAG 2 cut(s) 1127, 1250
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 3 cut(s) 8, 1129, 1135
BseYI CCCAGC 1 cut(s) 542
BshFI GGCC 2 cut(s) 153, 1442
BsiHKAI GWGCWC 1 cut(s) 595
BsiSI CCGG 3 cut(s) 177, 1077, 1092
BslFI GGGAC 2 cut(s) 492, 1404
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 5 cut(s) 110, 117, 566, 845, 850
BsmFI GGGAC 2 cut(s) 492, 1404
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 2 cut(s) 153, 1442
Bso31I GGTCTC 2 cut(s) 110, 845
Bsp1286I GDGCHC 2 cut(s) 595, 762
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 5 cut(s) 163, 231, 556, 922, 1293
Bsp19I CCATGG 3 cut(s) 529, 1257, 1545
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 153, 1442
BspCNI CTCAG 3 cut(s) 804, 841, 1048
BspLI GGNNCC 4 cut(s) 28, 396, 1411, 1551
BspPI GGATC 2 cut(s) 930, 1288
BspQI GCTCTTC 1 cut(s) 1269
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 2 cut(s) 110, 845
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 3 cut(s) 191, 330, 725
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 290, 529, 1257, 1545
BssMI GATC 5 cut(s) 163, 231, 556, 922, 1293
BssT1I CCWWGG 4 cut(s) 290, 529, 1257, 1545
Bst4CI ACNGT 4 cut(s) 423, 899, 1016, 1109
Bst6I CTCTTC 3 cut(s) 1269, 1284, 1557
BstAFI CTTAAG 1 cut(s) 374
BstAPI GCANNNNNTGC 3 cut(s) 214, 623, 791
BstAUI TGTACA 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 2 cut(s) 79, 1353
BstDEI CTNAG 4 cut(s) 812, 849, 1035, 1158
BstDSI CCRYGG 3 cut(s) 529, 1257, 1545
BstF5I GGATG 3 cut(s) 471, 1270, 1323
BstHHI GCGC 1 cut(s) 975
BstKTI GATC 5 cut(s) 166, 234, 559, 925, 1296
BstMAI GTCTC 5 cut(s) 110, 117, 566, 845, 850
BstMBI GATC 5 cut(s) 163, 231, 556, 922, 1293
BstMWI GCNNNNNNNGC 7 cut(s) 68, 214, 254, 392, 623, 791, 1154
BstNSI RCATGY 2 cut(s) 1351, 1355
BstSLI GKGCMC 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 8, 1129, 1135
BstX2I RGATCY 3 cut(s) 556, 922, 1293
BstYI RGATCY 3 cut(s) 556, 922, 1293
BsuRI GGCC 2 cut(s) 153, 1442
BtgI CCRYGG 3 cut(s) 529, 1257, 1545
BtsCI GGATG 3 cut(s) 471, 1270, 1323
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 79, 1353
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 975
Cfr10I RCCGGY 1 cut(s) 176
Csp6I GTAC 3 cut(s) 222, 360, 419
CviQI GTAC 3 cut(s) 222, 360, 419
DdeI CTNAG 4 cut(s) 812, 849, 1035, 1158
DpnI GATC 5 cut(s) 165, 233, 558, 924, 1295
DpnII GATC 5 cut(s) 163, 231, 556, 922, 1293
DraI TTTAAA 1 cut(s) 690
EaeI YGGCCR 2 cut(s) 151, 1440
Eam1104I CTCTTC 3 cut(s) 1269, 1284, 1557
EarI CTCTTC 3 cut(s) 1269, 1284, 1557
Eco130I CCWWGG 4 cut(s) 290, 529, 1257, 1545
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 2 cut(s) 110, 845
Eco32I GATATC 1 cut(s) 871
Eco57I CTGAAG 3 cut(s) 1268, 1485, 1512
Eco72I CACGTG 1 cut(s) 842
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 4 cut(s) 290, 529, 1257, 1545
EcoT22I ATGCAT 2 cut(s) 649, 1353
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 4 cut(s) 290, 529, 1257, 1545
FalI AAGNNNNNCTT 8 cut(s) 987, 1019, 1266, 1298, 1281, 1313, 1483, 1515
FaqI GGGAC 2 cut(s) 492, 1404
FauNDI CATATG 1 cut(s) 1437
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 22, 1118, 1149
FokI GGATG 3 cut(s) 478, 1277, 1310
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 3 cut(s) 22, 1118, 1149
FspBI CTAG 1 cut(s) 1416
GlaI GCGC 1 cut(s) 974
GluI GCNGC 3 cut(s) 22, 1118, 1149
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 2 cut(s) 1137, 1344
HaeIII GGCC 2 cut(s) 153, 1442
HapII CCGG 3 cut(s) 177, 1077, 1092
HhaI GCGC 1 cut(s) 975
Hin6I GCGC 1 cut(s) 973
HinP1I GCGC 1 cut(s) 973
HincII GTYRAC 2 cut(s) 127, 1345
HindII GTYRAC 2 cut(s) 127, 1345
HpaII CCGG 3 cut(s) 177, 1077, 1092
HphI GGTGA 2 cut(s) 1121, 1246
Hpy166II GTNNAC 7 cut(s) 127, 224, 593, 916, 1321, 1345, 1569
Hpy188I TCNGA 7 cut(s) 10, 236, 737, 813, 850, 1051, 1531
Hpy188III TCNNGA 8 cut(s) 49, 161, 458, 886, 926, 947, 1286, 1361
Hpy8I GTNNAC 7 cut(s) 127, 224, 593, 916, 1321, 1345, 1569
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 883, 1048, 1509, 1536
HpyCH4III ACNGT 4 cut(s) 423, 899, 1016, 1109
HpyCH4IV ACGT 3 cut(s) 32, 45, 841
HpyCH4V TGCA 6 cut(s) 593, 626, 647, 1085, 1188, 1351
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 214, 254, 392, 623, 791, 1154
HpyF3I CTNAG 4 cut(s) 812, 849, 1035, 1158
HpySE526I ACGT 3 cut(s) 32, 45, 841
HspAI GCGC 1 cut(s) 973
Kzo9I GATC 5 cut(s) 163, 231, 556, 922, 1293
LguI GCTCTTC 1 cut(s) 1269
LmnI GCTCC 6 cut(s) 383, 400, 937, 1114, 1156, 1555
Lsp1109I GCAGC 3 cut(s) 8, 1129, 1135
LweI GCATC 4 cut(s) 217, 613, 781, 1072
MaeI CTAG 1 cut(s) 1416
MaeII ACGT 3 cut(s) 32, 45, 841
MaeIII GTNAC 3 cut(s) 313, 893, 899
MalI GATC 5 cut(s) 165, 233, 558, 924, 1295
MboI GATC 5 cut(s) 163, 231, 556, 922, 1293
MboII GAAGA 9 cut(s) 211, 296, 404, 418, 1274, 1286, 1301, 1527, 1574
MflI RGATCY 3 cut(s) 556, 922, 1293
MhlI GDGCHC 2 cut(s) 595, 762
MlsI TGGCCA 1 cut(s) 1442
MluNI TGGCCA 1 cut(s) 1442
MlyI GAGTC 5 cut(s) 310, 625, 1350, 1519, 1574
MmeI TCCRAC 1 cut(s) 361
Mox20I TGGCCA 1 cut(s) 1442
Mph1103I ATGCAT 2 cut(s) 649, 1353
MroXI GAANNNNTTC 2 cut(s) 1278, 1498
MscI TGGCCA 1 cut(s) 1442
MseI TTAA 8 cut(s) 95, 375, 602, 675, 689, 771, 875, 1008
MslI CAYNNNNRTG 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 1442
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 3 cut(s) 177, 1077, 1092
Mva1269I GAATGC 1 cut(s) 649
MwoI GCNNNNNNNGC 7 cut(s) 68, 214, 254, 392, 623, 791, 1154
NcoI CCATGG 3 cut(s) 529, 1257, 1545
NdeI CATATG 1 cut(s) 1437
NdeII GATC 5 cut(s) 163, 231, 556, 922, 1293
NlaIV GGNNCC 4 cut(s) 28, 396, 1411, 1551
NmuCI GTSAC 3 cut(s) 313, 893, 899
NsiI ATGCAT 2 cut(s) 649, 1353
NspI RCATGY 2 cut(s) 1351, 1355
PaeI GCATGC 1 cut(s) 1355
PciSI GCTCTTC 1 cut(s) 1269
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 123, 1514
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 1278, 1498
PfeI GAWTC 5 cut(s) 168, 202, 1366, 1451, 1532
PkrI GCNGC 3 cut(s) 23, 1119, 1150
PleI GAGTC 5 cut(s) 310, 625, 1349, 1518, 1573
PmaCI CACGTG 1 cut(s) 842
PmlI CACGTG 1 cut(s) 842
PpsI GAGTC 5 cut(s) 310, 625, 1349, 1518, 1573
Ppu21I YACGTR 1 cut(s) 842
PspCI CACGTG 1 cut(s) 842
PspFI CCCAGC 1 cut(s) 542
PspN4I GGNNCC 4 cut(s) 28, 396, 1411, 1551
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 3 cut(s) 556, 922, 1293
RsaI GTAC 3 cut(s) 223, 361, 420
RsaNI GTAC 3 cut(s) 222, 360, 419
RseI CAYNNNNRTG 1 cut(s) 534
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 1269
SaqAI TTAA 8 cut(s) 95, 375, 602, 675, 689, 771, 875, 1008
SatI GCNGC 3 cut(s) 22, 1118, 1149
Sau3AI GATC 5 cut(s) 163, 231, 556, 922, 1293
SchI GAGTC 5 cut(s) 310, 625, 1350, 1519, 1574
SduI GDGCHC 2 cut(s) 595, 762
SfaNI GCATC 4 cut(s) 217, 613, 781, 1072
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 3 cut(s) 159, 374, 656
SmoI CTYRAG 3 cut(s) 159, 374, 656
SpeI ACTAGT 1 cut(s) 1415
SphI GCATGC 1 cut(s) 1355
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 1416
StyI CCWWGG 4 cut(s) 290, 529, 1257, 1545
TaaI ACNGT 4 cut(s) 423, 899, 1016, 1109
TaiI ACGT 3 cut(s) 35, 48, 844
TaqI TCGA 7 cut(s) 126, 132, 166, 364, 641, 1272, 1508
TatI WGTACW 3 cut(s) 221, 359, 418
TfiI GAWTC 5 cut(s) 168, 202, 1366, 1451, 1532
Tru1I TTAA 8 cut(s) 95, 375, 602, 675, 689, 771, 875, 1008
Tru9I TTAA 8 cut(s) 95, 375, 602, 675, 689, 771, 875, 1008
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 3 cut(s) 313, 893, 899
TseI GCWGC 3 cut(s) 21, 1117, 1148
Tsp45I GTSAC 3 cut(s) 313, 893, 899
TspDTI ATGAA 2 cut(s) 426, 1575
TspGWI ACGGA 2 cut(s) 6, 511
TspRI CASTG 1 cut(s) 318
Vha464I CTTAAG 1 cut(s) 374
VneI GTGCAC 1 cut(s) 591
XapI RAATTY 3 cut(s) 523, 834, 1477
XceI RCATGY 2 cut(s) 1351, 1355
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 2 cut(s) 1278, 1498
XspI CTAG 1 cut(s) 1416
Zsp2I ATGCAT 2 cut(s) 649, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.