Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023248.1

Orthogroup ID

OG0009069

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 605

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023248.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 314 bp

gggacagactgcccttctaagaagagcagagctaaagacttttgtggactttcatggaaatgaggctgggaaaggtggggatctcacacatgatgagactaccatcatcgctggggcacttcaattgactgaaaagactgcaaaagatgccatgactcccatatcaaatgcattttcccttgatctggatgcacctcttactttggaaacactgaatgcgataatggcaatgggtcatagtagagttccggtttatgctgagaaccccagaaatataattggacttgttctggtaattccatttattctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS DUF21

Protein Analysis

104

Amino Acids

11.17

Weight (kDa)

5.17

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47330 AT1G47330
fragaria_vesca	FvH4_2g39791
malus_domestica	MD08G1031700.v1.1 MD15G1027600.v1.1
prunus_persica	Prupe.1G379300_v2.0.a1
pyrus_communis	pycom08g02500 pycom15g02350
rosa_chinensis	RchiOBHm_Chr6g0301051
rosa_laevigata	RLG00000011281
rosa_multiflora	Rmu_co8014528.1_g000001 Rmu_sc0003168.1_g000011 Rmu_sc0023248.1_g000001 Rmu_sc0035551.1_g000002 Rmu_sc0039108.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167220
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414200 Rh6AG414300 Rh6BG421200 Rh6CG428800 Rh6DG414200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	123
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	119
BccI	CCATC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	90
BmsI	GCATC	2 cut(s)	137, 179
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	119
BseYI	CCCAGC	2 cut(s)	66, 111
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	80, 182
BspCNI	CTCAG	1 cut(s)	251
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	235
BssMI	GATC	2 cut(s)	80, 182
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	18, 259
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	83, 185
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	80, 182
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 225
BstSLI	GKGCMC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	210
CviAII	CATG	3 cut(s)	54, 90, 152
CviJI	RGCY	2 cut(s)	32, 66
CviKI_1	RGCY	2 cut(s)	32, 66
DdeI	CTNAG	2 cut(s)	18, 259
DpnI	GATC	2 cut(s)	82, 184
DpnII	GATC	2 cut(s)	80, 182
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	173
FaeI	CATG	3 cut(s)	57, 93, 155
FaiI	YATR	7 cut(s)	55, 91, 153, 162, 238, 256, 276
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	53, 89, 151
FokI	GGATG	1 cut(s)	201
GsaI	CCCAGC	2 cut(s)	70, 115
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	3 cut(s)	57, 93, 155
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	141, 171, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 225
HpyF3I	CTNAG	2 cut(s)	18, 259
Hsp92II	CATG	3 cut(s)	57, 93, 155
Kzo9I	GATC	2 cut(s)	80, 182
LguI	GCTCTTC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	52, 97, 171, 262, 276, 281
LweI	GCATC	2 cut(s)	137, 179
MalI	GATC	2 cut(s)	82, 184
MboI	GATC	2 cut(s)	80, 182
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	123, 277, 295
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	2 cut(s)	56, 205
Mph1103I	ATGCAT	1 cut(s)	173
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	58
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	147, 225
NdeII	GATC	2 cut(s)	80, 182
NlaIII	CATG	3 cut(s)	57, 93, 155
NsiI	ATGCAT	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	17
PctI	GAATGC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspFI	CCCAGC	2 cut(s)	66, 111
PsuI	RGATCY	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	80, 182
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	3 cut(s)	34, 77, 197
SfaNI	GCATC	2 cut(s)	137, 179
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	3 cut(s)	123, 277, 295
TasI	AATT	3 cut(s)	123, 277, 295
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.