Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003168.1

Orthogroup ID

OG0009069

Physical Location & Seq

Genomic Coordinates Reverse (-)

63615 .. 66091

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003168.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggaggctcttcctgtcttcttggacagtcttgtgcctccttgggcagctattgccatatccgtcactcttattcttttgtttggagagataatgccgcaagctgtgtgtactcgctatggattgactgttggggcaacactggcaccatttgtgcgcgttcttctcatgcttttcctccctatttcttatccaattagtaaggttctggattacatgttaggtaagggacagactgcccttctaagaagagcagagctaaagacttttgtggactttcatggaaatgaggctgggaaaggtggggatctcacacatgatgagactaccatcatcgctggggcacttcaattgactgaaaagactgcaaaagatgccatgactcccatatcaaatgcattttcccttgatctggatgcacctcttactttggaaacactgaatgcgataatggcaatgggtcatagtagagttccggtttatgctgagaaccccagaaatataattggacttgttctggtcaaaaatctcttgatgattgatacagaagaaacagttactttgagaaaaatgatgataagaaaaattcctcgggtttcagaagacatgccgctatatgatattcttaatgaatttcagaagggtcacagtcatattgctgttgtctataaggatgtaaaggaaacactaaagaatggcaaagagagtgaaacactagaggcatcactgaggaaagatgaaaaaatgggtggccccacagctgagactaagagtttggggccaaaattggattcagacaatgctcagatagatttagaccatagtgatgggggtaaaaaaactaagaagagcccatcagctactccttcttttaagaagcggcacagaggttgttcattttgtattctggacattgagaatggtcccattccagtattcccacccagtcaagaggttgttggagtaatttccatggaggatgtcattgaagaacttcttcaggaagagatactggatgaaacagatgagtatgtcaatatccataacaggattaagatcaatatgcatgcgtctcaggaaaaggctccttccttgaattcaccccagccttccccagaagggtcatctgtcactgacacctcagcgccgacggatttaggttccactcaatatcaagactctggtaagaatgctgcggatttgatgccaacagtctcaaacaccagtgcgtatcaagcttctgaagctgagacgtcaagggatcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS DUF21

Protein Analysis

422

Amino Acids

46.14

Weight (kDa)

5.09

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47330 AT1G47330
fragaria_vesca	FvH4_2g39791
malus_domestica	MD08G1031700.v1.1 MD15G1027600.v1.1
prunus_persica	Prupe.1G379300_v2.0.a1
pyrus_communis	pycom08g02500 pycom15g02350
rosa_chinensis	RchiOBHm_Chr6g0301051
rosa_laevigata	RLG00000011281
rosa_multiflora	Rmu_co8014528.1_g000001 Rmu_sc0003168.1_g000011 Rmu_sc0023248.1_g000001 Rmu_sc0035551.1_g000002 Rmu_sc0039108.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167220
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414200 Rh6AG414300 Rh6BG421200 Rh6CG428800 Rh6DG414200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1256
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	159
AciI	CCGC	4 cut(s)	98, 611, 880, 1196
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	3 cut(s)	585, 632, 1096
AcuI	CTGAAG	2 cut(s)	983, 1263
AcyI	GRCGYC	1 cut(s)	1253
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	412, 1119
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	350, 989, 1096
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	7 cut(s)	50, 104, 259, 761, 860, 1238, 1247
AluI	AGCT	7 cut(s)	50, 104, 259, 761, 860, 1238, 1247
Alw26I	GTCTC	5 cut(s)	317, 758, 1077, 1219, 1244
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	2 cut(s)	751, 779
ApeKI	GCWGC	2 cut(s)	47, 1193
ApoI	RAATTY	3 cut(s)	585, 632, 1096
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
Asp700I	GAANNNNTTC	2 cut(s)	993, 996
AspLEI	GCGC	2 cut(s)	159, 1147
AspS9I	GGNCC	3 cut(s)	752, 779, 923
AsuHPI	GGTGA	1 cut(s)	1092
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	923
BaeGI	GKGCMC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	854
BbsI	GAAGAC	2 cut(s)	10, 609
BbvCI	CCTCAGC	1 cut(s)	1141
BbvI	GCAGC	2 cut(s)	59, 1180
BccI	CCATC	3 cut(s)	338, 821, 862
BcoDI	GTCTC	5 cut(s)	317, 758, 1077, 1219, 1244
BfaI	CTAG	1 cut(s)	716
BfoI	RGCGCY	1 cut(s)	1148
BisI	GCNGC	5 cut(s)	48, 98, 611, 881, 1194
BlsI	GCNGC	5 cut(s)	49, 99, 612, 882, 1195
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	3 cut(s)	752, 779, 923
BmiI	GGNNCC	6 cut(s)	147, 754, 780, 925, 1086, 1162
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	4 cut(s)	364, 406, 731, 1194
BmuI	ACTGGG	1 cut(s)	939
BpiI	GAAGAC	2 cut(s)	10, 609
Bpu10I	CCTNAGC	1 cut(s)	1141
BsaBI	GATNNNNATC	1 cut(s)	1055
BsaHI	GRCGYC	1 cut(s)	1253
BsaJI	CCNNGG	3 cut(s)	41, 590, 972
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 1119
Bse1I	ACTGG	5 cut(s)	147, 932, 945, 1017, 1224
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	1055
BseDI	CCNNGG	3 cut(s)	41, 590, 972
BseGI	GGATG	4 cut(s)	421, 679, 985, 1021
BseJI	GATNNNNATC	1 cut(s)	1055
BseLI	CCNNNNNNNGG	2 cut(s)	412, 1119
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	7 cut(s)	477, 719, 753, 818, 1088, 1155, 1239
BseNI	ACTGG	5 cut(s)	147, 932, 945, 1017, 1224
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	2 cut(s)	59, 1180
BseYI	CCCAGC	3 cut(s)	293, 338, 1104
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	753, 781
BshNI	GGYRCC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	2 cut(s)	243, 909
BslI	CCNNNNNNNGG	2 cut(s)	412, 1119
BsmAI	GTCTC	5 cut(s)	317, 758, 1077, 1219, 1244
BsmBI	CGTCTC	2 cut(s)	1077, 1244
BsmFI	GGGAC	2 cut(s)	243, 909
BsmI	GAATGC	2 cut(s)	448, 1195
BsnI	GGCC	2 cut(s)	753, 781
BsoBI	CYCGRG	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	346, 854
Bsp143I	GATC	4 cut(s)	307, 409, 1056, 1261
Bsp19I	CCATGG	1 cut(s)	972
BspACI	CCGC	4 cut(s)	98, 611, 880, 1196
BspANI	GGCC	2 cut(s)	753, 781
BspCNI	CTCAG	7 cut(s)	478, 720, 754, 817, 1087, 1154, 1240
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	6 cut(s)	147, 754, 780, 925, 1086, 1162
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	3 cut(s)	15, 244, 842
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	5 cut(s)	147, 932, 945, 1017, 1224
BssECI	CCNNGG	3 cut(s)	41, 590, 972
BssMI	GATC	4 cut(s)	307, 409, 1056, 1261
BssNI	GRCGYC	1 cut(s)	1253
BssT1I	CCWWGG	2 cut(s)	41, 972
Bst4CI	ACNGT	5 cut(s)	29, 130, 556, 650, 1213
Bst6I	CTCTTC	4 cut(s)	15, 244, 842, 999
BstACI	GRCGYC	1 cut(s)	1253
BstAPI	GCANNNNNTGC	2 cut(s)	53, 374
BstC8I	GCNNGC	2 cut(s)	102, 1068
BstDSI	CCRYGG	1 cut(s)	972
BstF5I	GGATG	4 cut(s)	421, 679, 985, 1021
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	1148
BstHHI	GCGC	2 cut(s)	159, 1147
BstKTI	GATC	4 cut(s)	310, 412, 1059, 1264
BstMAI	GTCTC	5 cut(s)	317, 758, 1077, 1219, 1244
BstMBI	GATC	4 cut(s)	307, 409, 1056, 1261
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 143, 374, 452, 1235, 1244
BstNSI	RCATGY	3 cut(s)	220, 610, 1070
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	59, 1180
BstV2I	GAAGAC	2 cut(s)	10, 609
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	753, 781
BtgI	CCRYGG	1 cut(s)	972
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	4 cut(s)	421, 679, 985, 1021
BtsIMutI	CAGTG	5 cut(s)	140, 437, 725, 1131, 1231
Cac8I	GCNNGC	2 cut(s)	102, 1068
CfoI	GCGC	2 cut(s)	159, 1147
Cfr13I	GGNCC	3 cut(s)	752, 779, 923
CseI	GACGC	1 cut(s)	1059
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	8 cut(s)	169, 217, 281, 317, 379, 607, 973, 1067
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	4 cut(s)	309, 411, 1058, 1263
DpnII	GATC	4 cut(s)	307, 409, 1056, 1261
Eam1104I	CTCTTC	4 cut(s)	15, 244, 842, 999
EarI	CTCTTC	4 cut(s)	15, 244, 842, 999
Eco130I	CCWWGG	2 cut(s)	41, 972
Eco24I	GRGCYC	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	923
Eco57I	CTGAAG	2 cut(s)	983, 1263
Eco88I	CYCGRG	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	1096
EcoT14I	CCWWGG	2 cut(s)	41, 972
EcoT22I	ATGCAT	2 cut(s)	400, 1068
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	2 cut(s)	41, 972
Esp3I	CGTCTC	2 cut(s)	1077, 1244
FaeI	CATG	8 cut(s)	172, 220, 284, 320, 382, 610, 976, 1070
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	243, 909
FatI	CATG	8 cut(s)	168, 216, 280, 316, 378, 606, 972, 1066
Fnu4HI	GCNGC	5 cut(s)	48, 98, 611, 881, 1194
FokI	GGATG	4 cut(s)	428, 686, 992, 1028
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	5 cut(s)	48, 98, 611, 881, 1194
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	158, 1146
GluI	GCNGC	5 cut(s)	48, 98, 611, 881, 1194
GsaI	CCCAGC	3 cut(s)	297, 342, 1108
HaeII	RGCGCY	1 cut(s)	1148
HaeIII	GGCC	2 cut(s)	753, 781
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	1059
HhaI	GCGC	2 cut(s)	159, 1147
Hin1I	GRCGYC	1 cut(s)	1253
Hin1II	CATG	8 cut(s)	172, 220, 284, 320, 382, 610, 976, 1070
Hin6I	GCGC	2 cut(s)	157, 1145
HinP1I	GCGC	2 cut(s)	157, 1145
HindIII	AAGCTT	1 cut(s)	1236
HinfI	GANTC	3 cut(s)	382, 791, 1178
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	1092
Hpy166II	GTNNAC	2 cut(s)	111, 274
Hpy188I	TCNGA	5 cut(s)	601, 639, 796, 807, 1243
Hpy188III	TCNNGA	8 cut(s)	209, 413, 532, 908, 950, 1001, 1076, 1175
Hpy8I	GTNNAC	2 cut(s)	111, 274
Hpy99I	CGWCG	1 cut(s)	1153
HpyAV	CCTTC	6 cut(s)	251, 634, 876, 1098, 1112, 1119
HpyCH4III	ACNGT	5 cut(s)	29, 130, 556, 650, 1213
HpyCH4IV	ACGT	1 cut(s)	1253
HpyCH4V	TGCA	4 cut(s)	368, 398, 419, 1066
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 143, 374, 452, 1235, 1244
HpySE526I	ACGT	1 cut(s)	1253
Hsp92I	GRCGYC	1 cut(s)	1253
Hsp92II	CATG	8 cut(s)	172, 220, 284, 320, 382, 610, 976, 1070
HspAI	GCGC	2 cut(s)	157, 1145
Kzo9I	GATC	4 cut(s)	307, 409, 1056, 1261
LguI	GCTCTTC	3 cut(s)	15, 244, 842
LmnI	GCTCC	1 cut(s)	1090
Lsp1109I	GCAGC	2 cut(s)	59, 1180
LweI	GCATC	4 cut(s)	364, 406, 731, 1194
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	1253
MaeIII	GTNAC	4 cut(s)	64, 556, 644, 1129
MalI	GATC	4 cut(s)	309, 411, 1058, 1263
MboI	GATC	4 cut(s)	307, 409, 1056, 1261
MboII	GAAGA	9 cut(s)	10, 155, 261, 560, 614, 859, 989, 1001, 1016
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	346, 854
MluCI	AATT	8 cut(s)	195, 350, 504, 585, 632, 785, 966, 1096
MlyI	GAGTC	2 cut(s)	376, 1172
MmeI	TCCRAC	1 cut(s)	940
Mph1103I	ATGCAT	2 cut(s)	400, 1068
MroXI	GAANNNNTTC	2 cut(s)	993, 996
MseI	TTAA	4 cut(s)	627, 873, 1053, 1267
MslI	CAYNNNNRTG	2 cut(s)	285, 825
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	476
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	448, 1195
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	6 cut(s)	53, 143, 374, 452, 1235, 1244
NcoI	CCATGG	1 cut(s)	972
NdeII	GATC	4 cut(s)	307, 409, 1056, 1261
NlaIII	CATG	8 cut(s)	172, 220, 284, 320, 382, 610, 976, 1070
NlaIV	GGNNCC	6 cut(s)	147, 754, 780, 925, 1086, 1162
NmuCI	GTSAC	3 cut(s)	64, 644, 1129
NsiI	ATGCAT	2 cut(s)	400, 1068
NspI	RCATGY	3 cut(s)	220, 610, 1070
PaeI	GCATGC	1 cut(s)	1070
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	3 cut(s)	15, 244, 842
PctI	GAATGC	2 cut(s)	448, 1195
PdmI	GAANNNNTTC	2 cut(s)	993, 996
PfeI	GAWTC	1 cut(s)	791
PkrI	GCNGC	5 cut(s)	49, 99, 612, 882, 1195
PleI	GAGTC	2 cut(s)	376, 1172
PpsI	GAGTC	2 cut(s)	376, 1172
PscI	ACATGT	1 cut(s)	216
PspFI	CCCAGC	3 cut(s)	293, 338, 1104
PspN4I	GGNNCC	6 cut(s)	147, 754, 780, 925, 1086, 1162
PspPI	GGNCC	3 cut(s)	752, 779, 923
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	285, 825
SapI	GCTCTTC	3 cut(s)	15, 244, 842
SaqAI	TTAA	4 cut(s)	627, 873, 1053, 1267
SatI	GCNGC	5 cut(s)	48, 98, 611, 881, 1194
Sau3AI	GATC	4 cut(s)	307, 409, 1056, 1261
Sau96I	GGNCC	3 cut(s)	752, 779, 923
SchI	GAGTC	2 cut(s)	376, 1172
SduI	GDGCHC	2 cut(s)	346, 854
SfaNI	GCATC	4 cut(s)	364, 406, 731, 1194
SinI	GGWCC	1 cut(s)	923
SmiMI	CAYNNNNRTG	2 cut(s)	285, 825
SphI	GCATGC	1 cut(s)	1070
Sse9I	AATT	8 cut(s)	195, 350, 504, 585, 632, 785, 966, 1096
SsiI	CCGC	4 cut(s)	98, 611, 880, 1196
SspMI	CTAG	1 cut(s)	716
StyI	CCWWGG	2 cut(s)	41, 972
TaaI	ACNGT	5 cut(s)	29, 130, 556, 650, 1213
TaiI	ACGT	1 cut(s)	1256
TasI	AATT	8 cut(s)	195, 350, 504, 585, 632, 785, 966, 1096
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	3 cut(s)	100, 613, 883
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	4 cut(s)	627, 873, 1053, 1267
Tru9I	TTAA	4 cut(s)	627, 873, 1053, 1267
TscAI	CASTG	5 cut(s)	147, 444, 732, 1138, 1231
TseFI	GTSAC	3 cut(s)	64, 644, 1129
TseI	GCWGC	2 cut(s)	47, 1193
Tsp45I	GTSAC	3 cut(s)	64, 644, 1129
TspDTI	ATGAA	5 cut(s)	269, 645, 753, 885, 1032
TspGWI	ACGGA	2 cut(s)	52, 1166
TspRI	CASTG	5 cut(s)	147, 444, 732, 1138, 1231
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	3 cut(s)	585, 632, 1096
XceI	RCATGY	3 cut(s)	220, 610, 1070
XmnI	GAANNNNTTC	2 cut(s)	993, 996
XspI	CTAG	1 cut(s)	716
ZraI	GACGTC	1 cut(s)	1254
Zsp2I	ATGCAT	2 cut(s)	400, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.