Prupe.1G379300_v2.0.a1

methyltransferase PMT28

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
34257079 .. 34260986
3908 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G379300.1

Sequence Viewer

Length: 1446 bp
ATGGCTGCGGAGGTGATCTGTTGTGGGACCAAGTTCTGGCTGTATGTGCTTATCATCATAGGGCTGGTGTGCTTTGCCGGAATGATGGCTGGGCTGACGCTGGGCCTCATGTCTCTCGGCCTCGTCGACCTCGAGGTCCTCATGAAGTCCGGTCGTCCTCAGGATCGCAAGCACGCCGCTAAGATTTATCCAGTGGTAAAGAATCAGCATCTGCTACTTTGTACACTTTTAATTGGCAACGCCTTGGCGATGGAGGCTCTTCCTGTATTCTTAGACAGTCTTGTGCCCCCTTGGGCAGCCATTGTGATATCAGTCACTCTCATCCTCGTGTTTGGGGAGATATTGCCACAAGCAGTCTGTACTCGCCATGGATTGACTGTTGGGGCAACAATGGCCCCGTTCGTGCGTGTTCTTCTTATTATTTTCCTCCCAATTTCTTATCCAATTAGTAAGGTTCTGGATTGGATGTTAGGTAAGGGGCATGCCGCCCTTTTAAGGAGAGCAGAGCTAAAGACTTTTGTGGATTTTCATGGTAATGAGGCTGGGAAAGGCGGGGATTTAACACATGATGAAACTACCATCATCGCTGGGGCACTTCAGTTGACTGAAAAGACTGCAAAAGATGCCATGACTCTCATATCAAGCGCATTTTCCCTTGATCTGGATGCACCTCTTACTTTGGAAACACTGAATGCAATAATGACAAAGGGTCATAGTAGAGTTCCAGTTTATGCTGGGAATCCCAAAAATATTATTGGACTTGTTCTGGTTAAGAATCTCTTGATGATTGATCCAGAAGATGCAGTTACTTTGAGAAAAATGATGATAAGAAGAATTCCTCGGGTTTCGGAAGACATACCTCTGTATGATATTCTAAATGAATTTCAGAAGGGTCACAGCCACATTGCTGTTGTATATAAGGATCTAAATGGGAGAAGGGAAGCATTAAAGAATGGCAAAGAGGGTGAAACATCTGTGTTTAAGGATGACTGTAAGATGCAAGGAGGCCAATCTGAGGCTTCATTGAAGAAAGATGGAAAAGTGGGTTCAAACAATGCTCAGATAGCAATGGACAATGGTGACGGAGGTCAACAAAATAAAAAAAGCCCACCAGCTACTCCGGCTTTTAAGAAACGACACAGAGGTTGTTCGCATTGTATTCTGGACATTGAGAATACTCCTATCCCAGTTTTCCCAGACAATGAAGAGGTTGTAGGAGTAATAACCATGGAGGATGTCATTGAAGAACTTCTTCAGGAAGAGATATTGGATGAAACGGATGAGTACGTCAATATCCACAACAGGATTAAGGTCAATATGCATGCATCTCAGGAAAAGGATTTTCACTTGAATTCACCTGAACTCCCAGAAGGGTCATCTGCCACTCCAACGATAACATCATCAGTGCCTACAGATTCAGGTTCTACTCAACATCAAGACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

52.5

Weight (kDa)

5.78

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AbsI CCTCGAGG 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 126
AciI CCGC 4 cut(s) 8, 177, 486, 552
AclWI GGATC 3 cut(s) 171, 785, 930
AcsI RAATTY 3 cut(s) 834, 881, 1351
AcuI CTGAAG 2 cut(s) 581, 1238
AfaI GTAC 3 cut(s) 223, 361, 1286
AfiI CCNNNNNNNGG 4 cut(s) 36, 495, 661, 1015
AgsI TTSAA 4 cut(s) 1027, 1050, 1244, 1351
AhdI GACNNNNNGTC 1 cut(s) 708
AluBI AGCT 2 cut(s) 508, 1115
AluI AGCT 2 cut(s) 508, 1115
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 3 cut(s) 171, 785, 930
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 2 cut(s) 131, 840
AoxI GGCC 4 cut(s) 103, 118, 393, 1006
ApeKI GCWGC 2 cut(s) 5, 296
ApoI RAATTY 3 cut(s) 834, 881, 1351
Asp700I GAANNNNTTC 2 cut(s) 1248, 1251
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 4 cut(s) 27, 103, 136, 394
AsuHPI GGTGA 4 cut(s) 25, 977, 1091, 1347
AvaI CYCGRG 2 cut(s) 131, 840
AvaII GGWCC 2 cut(s) 27, 136
AxyI CCTNAGG 1 cut(s) 159
BaeGI GKGCMC 2 cut(s) 288, 595
BauI CACGAG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 858
BbvI GCAGC 1 cut(s) 308
BccI CCATC 4 cut(s) 79, 244, 587, 1028
BcoDI GTCTC 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 1410
BisI GCNGC 4 cut(s) 6, 177, 297, 486
BlsI GCNGC 4 cut(s) 7, 178, 298, 487
Bme18I GGWCC 2 cut(s) 27, 136
BmeRI GACNNNNNGTC 1 cut(s) 708
BmeT110I CYCGRG 2 cut(s) 131, 840
BmgT120I GGNCC 4 cut(s) 27, 103, 136, 394
BmiI GGNNCC 2 cut(s) 28, 396
BmrI ACTGGG 1 cut(s) 1181
BmsI GCATC 6 cut(s) 217, 613, 655, 790, 987, 1334
BmuI ACTGGG 1 cut(s) 1181
BoxI GACNNNNGTC 1 cut(s) 1086
BpiI GAAGAC 1 cut(s) 858
BsaJI CCNNGG 5 cut(s) 243, 290, 367, 839, 1227
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 1347, 1377
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 495, 661, 1015
Bse1I ACTGG 3 cut(s) 191, 725, 1187
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 903, 1074
BseDI CCNNGG 5 cut(s) 243, 290, 367, 839, 1227
BseGI GGATG 7 cut(s) 321, 471, 670, 991, 1240, 1276, 1285
BseLI CCNNNNNNNGG 4 cut(s) 36, 495, 661, 1015
BseMI GCAATG 2 cut(s) 903, 1074
BseMII CTCAG 4 cut(s) 173, 1005, 1073, 1343
BseNI ACTGG 3 cut(s) 191, 725, 1187
BseSI GKGCMC 2 cut(s) 288, 595
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 5 cut(s) 89, 100, 542, 587, 734
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 4 cut(s) 105, 120, 395, 1008
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 2 cut(s) 131, 840
BsiSI CCGG 3 cut(s) 78, 150, 1121
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 4 cut(s) 36, 495, 661, 1015
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 4 cut(s) 105, 120, 395, 1008
BsoBI CYCGRG 2 cut(s) 131, 840
Bsp1286I GDGCHC 2 cut(s) 288, 595
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 5 cut(s) 15, 163, 658, 790, 922
Bsp19I CCATGG 2 cut(s) 367, 1227
BspACI CCGC 4 cut(s) 8, 177, 486, 552
BspANI GGCC 4 cut(s) 105, 120, 395, 1008
BspCNI CTCAG 4 cut(s) 172, 1006, 1072, 1342
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 28, 396
BspPI GGATC 3 cut(s) 171, 785, 930
BspQI GCTCTTC 1 cut(s) 264
BsrDI GCAATG 2 cut(s) 903, 1074
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 3 cut(s) 191, 725, 1187
BssECI CCNNGG 5 cut(s) 243, 290, 367, 839, 1227
BssMI GATC 5 cut(s) 15, 163, 658, 790, 922
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 4 cut(s) 243, 290, 367, 1227
Bst2BI CACGAG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 278, 379, 992
Bst6I CTCTTC 3 cut(s) 264, 1200, 1254
BstAPI GCANNNNNTGC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 170, 174, 483, 1323
BstDEI CTNAG 6 cut(s) 159, 180, 271, 1014, 1059, 1329
BstDSI CCRYGG 2 cut(s) 367, 1227
BstF5I GGATG 7 cut(s) 321, 471, 670, 991, 1240, 1276, 1285
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 5 cut(s) 18, 166, 661, 793, 925
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 5 cut(s) 15, 163, 658, 790, 922
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 6 cut(s) 46, 254, 392, 623, 1064, 1121
BstNSI RCATGY 2 cut(s) 485, 1325
BstPAI GACNNNNGTC 1 cut(s) 1086
BstSFI CTRYAG 1 cut(s) 1410
BstSLI GKGCMC 2 cut(s) 288, 595
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 4 cut(s) 105, 120, 395, 1008
BtgI CCRYGG 2 cut(s) 367, 1227
BtgZI GCGATG 2 cut(s) 263, 568
BtsCI GGATG 7 cut(s) 321, 471, 670, 991, 1240, 1276, 1285
BtsIMutI CAGTG 3 cut(s) 198, 686, 1410
Cac8I GCNNGC 4 cut(s) 170, 174, 483, 1323
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 4 cut(s) 27, 103, 136, 394
CseI GACGC 1 cut(s) 106
Csp6I GTAC 3 cut(s) 222, 360, 1285
CviAII CATG 9 cut(s) 109, 142, 368, 482, 530, 566, 628, 1228, 1322
CviQI GTAC 3 cut(s) 222, 360, 1285
DdeI CTNAG 6 cut(s) 159, 180, 271, 1014, 1059, 1329
DpnI GATC 5 cut(s) 17, 165, 660, 792, 924
DpnII GATC 5 cut(s) 15, 163, 658, 790, 922
DrdI GACNNNNNNGTC 1 cut(s) 134
DriI GACNNNNNGTC 1 cut(s) 708
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 264, 1200, 1254
Eam1105I GACNNNNNGTC 1 cut(s) 708
EarI CTCTTC 3 cut(s) 264, 1200, 1254
Eco130I CCWWGG 4 cut(s) 243, 290, 367, 1227
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 27, 136
Eco57I CTGAAG 2 cut(s) 581, 1238
Eco81I CCTNAGG 1 cut(s) 159
Eco88I CYCGRG 2 cut(s) 131, 840
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 2 cut(s) 834, 1351
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 4 cut(s) 243, 290, 367, 1227
EcoT22I ATGCAT 2 cut(s) 1323, 1327
ErhI CCWWGG 4 cut(s) 243, 290, 367, 1227
FaeI CATG 9 cut(s) 112, 145, 371, 485, 533, 569, 631, 1231, 1325
FalI AAGNNNNNCTT 4 cut(s) 764, 796, 1236, 1268
FaqI GGGAC 1 cut(s) 40
FatI CATG 9 cut(s) 108, 141, 367, 481, 529, 565, 627, 1227, 1321
FauI CCCGC 1 cut(s) 545
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 6, 177, 297, 486
FokI GGATG 7 cut(s) 308, 478, 677, 998, 1247, 1283, 1292
Fsp4HI GCNGC 4 cut(s) 6, 177, 297, 486
GlaI GCGC 1 cut(s) 646
GluI GCNGC 4 cut(s) 6, 177, 297, 486
GsaI CCCAGC 5 cut(s) 93, 104, 546, 591, 738
HaeIII GGCC 4 cut(s) 105, 120, 395, 1008
HapII CCGG 3 cut(s) 78, 150, 1121
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 647
Hin1II CATG 9 cut(s) 112, 145, 371, 485, 533, 569, 631, 1231, 1325
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 3 cut(s) 127, 603, 1091
HindII GTYRAC 3 cut(s) 127, 603, 1091
HinfI GANTC 5 cut(s) 202, 631, 739, 775, 1415
HpaII CCGG 3 cut(s) 78, 150, 1121
HphI GGTGA 4 cut(s) 25, 977, 1091, 1347
Hpy166II GTNNAC 4 cut(s) 127, 224, 603, 1091
Hpy188I TCNGA 4 cut(s) 850, 888, 1015, 1062
Hpy8I GTNNAC 4 cut(s) 127, 224, 603, 1091
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 883, 930, 1364
HpyCH4III ACNGT 3 cut(s) 278, 379, 992
HpyCH4IV ACGT 1 cut(s) 1287
HpyCH4V TGCA 7 cut(s) 617, 668, 695, 803, 1000, 1321, 1325
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 254, 392, 623, 1064, 1121
HpyF3I CTNAG 6 cut(s) 159, 180, 271, 1014, 1059, 1329
HpySE526I ACGT 1 cut(s) 1287
Hsp92II CATG 9 cut(s) 112, 145, 371, 485, 533, 569, 631, 1231, 1325
HspAI GCGC 1 cut(s) 645
Kzo9I GATC 5 cut(s) 15, 163, 658, 790, 922
LguI GCTCTTC 1 cut(s) 264
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 6 cut(s) 217, 613, 655, 790, 987, 1334
MaeII ACGT 1 cut(s) 1287
MaeIII GTNAC 4 cut(s) 313, 805, 893, 1079
MalI GATC 5 cut(s) 17, 165, 660, 792, 924
MboI GATC 5 cut(s) 15, 163, 658, 790, 922
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 288, 595
MluCI AATT 6 cut(s) 231, 432, 444, 834, 881, 1351
MlyI GAGTC 1 cut(s) 625
MmeI TCCRAC 1 cut(s) 1412
Mph1103I ATGCAT 2 cut(s) 1323, 1327
MroXI GAANNNNTTC 2 cut(s) 1248, 1251
MseI TTAA 8 cut(s) 230, 494, 560, 771, 947, 981, 1128, 1308
MslI CAYNNNNRTG 2 cut(s) 326, 534
MspI CCGG 3 cut(s) 78, 150, 1121
Mva1269I GAATGC 1 cut(s) 697
MwoI GCNNNNNNNGC 6 cut(s) 46, 254, 392, 623, 1064, 1121
NcoI CCATGG 2 cut(s) 367, 1227
NdeII GATC 5 cut(s) 15, 163, 658, 790, 922
NlaIII CATG 9 cut(s) 112, 145, 371, 485, 533, 569, 631, 1231, 1325
NlaIV GGNNCC 2 cut(s) 28, 396
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 313, 893, 1079
NsiI ATGCAT 2 cut(s) 1323, 1327
NspI RCATGY 2 cut(s) 485, 1325
PaeI GCATGC 2 cut(s) 485, 1325
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 129
PctI GAATGC 1 cut(s) 697
PdmI GAANNNNTTC 2 cut(s) 1248, 1251
PfeI GAWTC 4 cut(s) 202, 739, 775, 1415
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 4 cut(s) 7, 178, 298, 487
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 1086
Psp5II RGGWCCY 1 cut(s) 136
PspFI CCCAGC 5 cut(s) 89, 100, 542, 587, 734
PspN4I GGNNCC 2 cut(s) 28, 396
PspPI GGNCC 4 cut(s) 27, 103, 136, 394
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 922
RsaI GTAC 3 cut(s) 223, 361, 1286
RsaNI GTAC 3 cut(s) 222, 360, 1285
RseI CAYNNNNRTG 2 cut(s) 326, 534
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 8 cut(s) 230, 494, 560, 771, 947, 981, 1128, 1308
SatI GCNGC 4 cut(s) 6, 177, 297, 486
Sau3AI GATC 5 cut(s) 15, 163, 658, 790, 922
Sau96I GGNCC 4 cut(s) 27, 103, 136, 394
SchI GAGTC 1 cut(s) 625
SduI GDGCHC 2 cut(s) 288, 595
SfaNI GCATC 6 cut(s) 217, 613, 655, 790, 987, 1334
SfcI CTRYAG 1 cut(s) 1410
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 2 cut(s) 27, 136
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 326, 534
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SphI GCATGC 2 cut(s) 485, 1325
Sse9I AATT 6 cut(s) 231, 432, 444, 834, 881, 1351
SsiI CCGC 4 cut(s) 8, 177, 486, 552
SspI AATATT 1 cut(s) 751
StyI CCWWGG 4 cut(s) 243, 290, 367, 1227
TaaI ACNGT 3 cut(s) 278, 379, 992
TaiI ACGT 1 cut(s) 1290
TaqI TCGA 2 cut(s) 126, 132
TasI AATT 6 cut(s) 231, 432, 444, 834, 881, 1351
TatI WGTACW 2 cut(s) 221, 359
TauI GCSGC 2 cut(s) 179, 488
TfiI GAWTC 4 cut(s) 202, 739, 775, 1415
Tru1I TTAA 8 cut(s) 230, 494, 560, 771, 947, 981, 1128, 1308
Tru9I TTAA 8 cut(s) 230, 494, 560, 771, 947, 981, 1128, 1308
TscAI CASTG 3 cut(s) 198, 693, 1410
TseFI GTSAC 3 cut(s) 313, 893, 1079
TseI GCWGC 2 cut(s) 5, 296
Tsp45I GTSAC 3 cut(s) 313, 893, 1079
TspDTI ATGAA 7 cut(s) 158, 518, 585, 894, 1011, 1218, 1287
TspGWI ACGGA 2 cut(s) 1098, 1292
TspRI CASTG 3 cut(s) 198, 693, 1410
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 27, 136
XapI RAATTY 3 cut(s) 834, 881, 1351
XceI RCATGY 2 cut(s) 485, 1325
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 2 cut(s) 1248, 1251
Zsp2I ATGCAT 2 cut(s) 1323, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.