Rh6BG421200

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009069
Physical Location & Seq
Reverse (-)
64452491 .. 64456534
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG421200.1

Sequence Viewer

Length: 1239 bp
ATGCAAAGATCTTCACTTTTATTTCCTTTTTATGCATTACTCCAGATAATGCCGCAAGCTGTGTGTACTCGCTATGGATTGACTGTTGGGGCAACACTGGCACCATTTGTGCGCGTTCTTCTCATGCTTTTCCTCCCTATTTCTTATCCAATTAGTAAGGTTCTGGATTACATGTTAGGTAAGGGACAGACTGCCCTTCTAAGAAGAGCAGAGCTAAAGACTTTTGTGGACTTTCATGGAAATGAGGCTGGGAAAGGTGGGGATCTCACACATGATGAGACTACCATCATTGCTGGGGCACTTCAATTGACTGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAATGCATTTTCCCTTGATCTGGATGCACCTCTTACTTTGGAAACACTGAATGCGATAATGGCAATGGGTCATAGTAGAGTTCCGGTTTATGCTGAGAACCCCAGAAATATAATTGGACTTGTTCTGGTCAAAAATCTCTTGATGATTGATACAGAAGAAACAGTTACTTTGAGAAAAATGATGATAAGAAAAATTCCTCGGGTTTCAGAAGACATGCCGCTATATGATATTCTTAATGAATTTCAGAAGGGTCACAGTCATATTGCTGTTGTCTATAAGGATGTAAAGGAAACACTAAAGAATGGCAAAGAGAGTGAAACACTAGAGGCATCACTGAGGAAAGATGAAAAACTGGGTGGCCCCACAGCTGAGACTAAGAGTTTGGGGCCAAAATTGGATTCAGACAATGCTCAGATAGATTTAGACCATAGTGATGGGGGCCAAAAAACTAAGAAGAGCCCATCAGCTACTCCCTCTTTTAAGAAGCGGCACAGAGGTTGTTCATTTTGTATTCTGGACATTGAGAATGGTCCCATTCCAGTATTCCCACCCAGTCAAGAGGTTGTTGGAGTAATTACCATGGAGGATGTCATTGAAGAACTTCTTCAGGAAGAGATACTGGATGAAACAGATGAGTATGTCAATATCCATAACAGGATTAAGATCAATATGCATGCATCTCAGGAAAAGGCTCCTTCCTTGAATTCACCCCAGCCTTCCCCAGAAGGGTCATCTGTCACTGACACCTCAGCACCGATATCATCAGCGCCGACGGATTTAGGTTCCACTCAATATCAAGACTCTGGTAAGAATGCTGCGGATTTGATGCCAACAGTCTCAAACACCAGTGCGTATCAAGCTTCTGAAGCTGAGACGTCAAGGGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS DUF21

Protein Analysis

412

Amino Acids

45.17

Weight (kDa)

5.26

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 15 - 90 9.1e-10 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1226
AccB1I GGYRCC 1 cut(s) 100
AccII CGCG 1 cut(s) 114
AciI CCGC 4 cut(s) 53, 566, 835, 1166
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 3 cut(s) 540, 587, 1051
AcuI CTGAAG 2 cut(s) 938, 1233
AcyI GRCGYC 1 cut(s) 1223
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 367, 1074
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 305, 944, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 6 cut(s) 59, 214, 716, 815, 1208, 1217
AluI AGCT 6 cut(s) 59, 214, 716, 815, 1208, 1217
Alw26I GTCTC 4 cut(s) 272, 713, 1189, 1214
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 3 cut(s) 706, 734, 787
ApeKI GCWGC 1 cut(s) 1163
ApoI RAATTY 3 cut(s) 540, 587, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
Asp700I GAANNNNTTC 2 cut(s) 948, 951
AspLEI GCGC 2 cut(s) 114, 1117
AspS9I GGNCC 4 cut(s) 707, 734, 787, 878
AsuHPI GGTGA 1 cut(s) 1047
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 809
BbsI GAAGAC 1 cut(s) 564
BbvCI CCTCAGC 1 cut(s) 1096
BbvI GCAGC 1 cut(s) 1150
BccI CCATC 3 cut(s) 293, 776, 817
BcoDI GTCTC 4 cut(s) 272, 713, 1189, 1214
BfaI CTAG 1 cut(s) 671
BfoI RGCGCY 1 cut(s) 1118
BglII AGATCT 1 cut(s) 8
BisI GCNGC 4 cut(s) 53, 566, 836, 1164
BlsI GCNGC 4 cut(s) 54, 567, 837, 1165
Bme18I GGWCC 1 cut(s) 878
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 4 cut(s) 707, 734, 787, 878
BmiI GGNNCC 7 cut(s) 102, 709, 735, 788, 880, 1041, 1132
BmrI ACTGGG 2 cut(s) 710, 894
BmsI GCATC 5 cut(s) 319, 361, 686, 1034, 1164
BmuI ACTGGG 2 cut(s) 710, 894
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 1096
Bsa29I ATCGAT 1 cut(s) 1234
BsaBI GATNNNNATC 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 1223
BsaJI CCNNGG 2 cut(s) 545, 927
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 1074
Bse1I ACTGG 6 cut(s) 102, 705, 887, 900, 972, 1194
Bse3DI GCAATG 2 cut(s) 288, 417
Bse8I GATNNNNATC 1 cut(s) 1010
BseCI ATCGAT 1 cut(s) 1234
BseDI CCNNGG 2 cut(s) 545, 927
BseGI GGATG 4 cut(s) 376, 634, 940, 976
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 2 cut(s) 367, 1074
BseMI GCAATG 2 cut(s) 288, 417
BseMII CTCAG 7 cut(s) 432, 674, 708, 773, 1043, 1110, 1209
BseNI ACTGG 6 cut(s) 102, 705, 887, 900, 972, 1194
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 1 cut(s) 1150
BseYI CCCAGC 3 cut(s) 248, 293, 1059
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 708, 736, 789
BshNI GGYRCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 1234
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 2 cut(s) 198, 864
BslI CCNNNNNNNGG 2 cut(s) 367, 1074
BsmAI GTCTC 4 cut(s) 272, 713, 1189, 1214
BsmBI CGTCTC 1 cut(s) 1214
BsmFI GGGAC 2 cut(s) 198, 864
BsmI GAATGC 2 cut(s) 403, 1165
BsnI GGCC 3 cut(s) 708, 736, 789
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 301, 809
Bsp143I GATC 5 cut(s) 8, 262, 364, 1011, 1231
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 4 cut(s) 53, 566, 835, 1166
BspANI GGCC 3 cut(s) 708, 736, 789
BspCNI CTCAG 7 cut(s) 433, 675, 709, 772, 1042, 1109, 1210
BspDI ATCGAT 1 cut(s) 1234
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 7 cut(s) 102, 709, 735, 788, 880, 1041, 1132
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 2 cut(s) 199, 797
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 288, 417
BsrI ACTGG 6 cut(s) 102, 705, 887, 900, 972, 1194
BssECI CCNNGG 2 cut(s) 545, 927
BssMI GATC 5 cut(s) 8, 262, 364, 1011, 1231
BssNI GRCGYC 1 cut(s) 1223
BssT1I CCWWGG 1 cut(s) 927
Bst4CI ACNGT 4 cut(s) 85, 511, 605, 1183
Bst6I CTCTTC 3 cut(s) 199, 797, 954
BstACI GRCGYC 1 cut(s) 1223
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 57, 1023
BstDSI CCRYGG 1 cut(s) 927
BstF5I GGATG 4 cut(s) 376, 634, 940, 976
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 1118
BstHHI GCGC 2 cut(s) 114, 1117
BstKTI GATC 5 cut(s) 11, 265, 367, 1014, 1234
BstMAI GTCTC 4 cut(s) 272, 713, 1189, 1214
BstMBI GATC 5 cut(s) 8, 262, 364, 1011, 1231
BstMWI GCNNNNNNNGC 5 cut(s) 98, 329, 407, 1205, 1214
BstNSI RCATGY 3 cut(s) 175, 565, 1025
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 1150
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 2 cut(s) 8, 262
BstXI CCANNNNNNTGG 1 cut(s) 782
BstYI RGATCY 2 cut(s) 8, 262
Bsu15I ATCGAT 1 cut(s) 1234
BsuRI GGCC 3 cut(s) 708, 736, 789
BsuTUI ATCGAT 1 cut(s) 1234
BtgI CCRYGG 1 cut(s) 927
BtsCI GGATG 4 cut(s) 376, 634, 940, 976
BtsIMutI CAGTG 5 cut(s) 95, 392, 680, 1086, 1201
Cac8I GCNNGC 2 cut(s) 57, 1023
CfoI GCGC 2 cut(s) 114, 1117
Cfr13I GGNCC 4 cut(s) 707, 734, 787, 878
ClaI ATCGAT 1 cut(s) 1234
Csp6I GTAC 1 cut(s) 66
CviAII CATG 8 cut(s) 124, 172, 236, 272, 334, 562, 928, 1022
CviQI GTAC 1 cut(s) 66
DpnI GATC 5 cut(s) 10, 264, 366, 1013, 1233
DpnII GATC 5 cut(s) 8, 262, 364, 1011, 1231
Eam1104I CTCTTC 3 cut(s) 199, 797, 954
EarI CTCTTC 3 cut(s) 199, 797, 954
Eco130I CCWWGG 1 cut(s) 927
Eco24I GRGCYC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 1107
Eco47I GGWCC 1 cut(s) 878
Eco57I CTGAAG 2 cut(s) 938, 1233
Eco88I CYCGRG 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 1051
EcoRV GATATC 1 cut(s) 1107
EcoT14I CCWWGG 1 cut(s) 927
EcoT22I ATGCAT 4 cut(s) 37, 355, 1023, 1027
EcoT38I GRGCYC 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 927
Esp3I CGTCTC 1 cut(s) 1214
FaeI CATG 8 cut(s) 127, 175, 239, 275, 337, 565, 931, 1025
FalI AAGNNNNNCTT 2 cut(s) 936, 968
FaqI GGGAC 2 cut(s) 198, 864
FatI CATG 8 cut(s) 123, 171, 235, 271, 333, 561, 927, 1021
Fnu4HI GCNGC 4 cut(s) 53, 566, 836, 1164
FokI GGATG 4 cut(s) 383, 641, 947, 983
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 4 cut(s) 53, 566, 836, 1164
FspBI CTAG 1 cut(s) 671
GlaI GCGC 2 cut(s) 113, 1116
GluI GCNGC 4 cut(s) 53, 566, 836, 1164
GsaI CCCAGC 3 cut(s) 252, 297, 1063
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 1118
HaeIII GGCC 3 cut(s) 708, 736, 789
HapII CCGG 1 cut(s) 431
HhaI GCGC 2 cut(s) 114, 1117
Hin1I GRCGYC 1 cut(s) 1223
Hin1II CATG 8 cut(s) 127, 175, 239, 275, 337, 565, 931, 1025
Hin6I GCGC 2 cut(s) 112, 1115
HinP1I GCGC 2 cut(s) 112, 1115
HindIII AAGCTT 1 cut(s) 1206
HinfI GANTC 3 cut(s) 337, 746, 1148
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 1047
Hpy166II GTNNAC 2 cut(s) 66, 229
Hpy188I TCNGA 5 cut(s) 556, 594, 751, 762, 1213
Hpy188III TCNNGA 9 cut(s) 43, 164, 368, 487, 863, 905, 956, 1031, 1145
Hpy8I GTNNAC 2 cut(s) 66, 229
Hpy99I CGWCG 1 cut(s) 1123
HpyAV CCTTC 5 cut(s) 206, 589, 1053, 1067, 1074
HpyCH4III ACNGT 4 cut(s) 85, 511, 605, 1183
HpyCH4IV ACGT 1 cut(s) 1223
HpyCH4V TGCA 7 cut(s) 4, 35, 323, 353, 374, 1021, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 329, 407, 1205, 1214
HpySE526I ACGT 1 cut(s) 1223
Hsp92I GRCGYC 1 cut(s) 1223
Hsp92II CATG 8 cut(s) 127, 175, 239, 275, 337, 565, 931, 1025
HspAI GCGC 2 cut(s) 112, 1115
Kzo9I GATC 5 cut(s) 8, 262, 364, 1011, 1231
LguI GCTCTTC 2 cut(s) 199, 797
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 1 cut(s) 1150
LweI GCATC 5 cut(s) 319, 361, 686, 1034, 1164
MaeI CTAG 1 cut(s) 671
MaeII ACGT 1 cut(s) 1223
MaeIII GTNAC 3 cut(s) 511, 599, 1084
MalI GATC 5 cut(s) 10, 264, 366, 1013, 1233
MboI GATC 5 cut(s) 8, 262, 364, 1011, 1231
MboII GAAGA 9 cut(s) 3, 110, 216, 515, 569, 814, 944, 956, 971
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 2 cut(s) 8, 262
MhlI GDGCHC 2 cut(s) 301, 809
MluCI AATT 8 cut(s) 150, 305, 459, 540, 587, 740, 921, 1051
MlyI GAGTC 2 cut(s) 331, 1142
MmeI TCCRAC 1 cut(s) 895
Mph1103I ATGCAT 4 cut(s) 37, 355, 1023, 1027
MroXI GAANNNNTTC 2 cut(s) 948, 951
MseI TTAA 3 cut(s) 582, 828, 1008
MslI CAYNNNNRTG 2 cut(s) 240, 780
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 2 cut(s) 403, 1165
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 98, 329, 407, 1205, 1214
NcoI CCATGG 1 cut(s) 927
NdeII GATC 5 cut(s) 8, 262, 364, 1011, 1231
NlaIII CATG 8 cut(s) 127, 175, 239, 275, 337, 565, 931, 1025
NlaIV GGNNCC 7 cut(s) 102, 709, 735, 788, 880, 1041, 1132
NmuCI GTSAC 2 cut(s) 599, 1084
NsiI ATGCAT 4 cut(s) 37, 355, 1023, 1027
NspI RCATGY 3 cut(s) 175, 565, 1025
PaeI GCATGC 1 cut(s) 1025
PciI ACATGT 1 cut(s) 171
PciSI GCTCTTC 2 cut(s) 199, 797
PctI GAATGC 2 cut(s) 403, 1165
PdmI GAANNNNTTC 2 cut(s) 948, 951
PfeI GAWTC 1 cut(s) 746
PkrI GCNGC 4 cut(s) 54, 567, 837, 1165
PleI GAGTC 2 cut(s) 331, 1142
PpsI GAGTC 2 cut(s) 331, 1142
PscI ACATGT 1 cut(s) 171
PspFI CCCAGC 3 cut(s) 248, 293, 1059
PspN4I GGNNCC 7 cut(s) 102, 709, 735, 788, 880, 1041, 1132
PspPI GGNCC 4 cut(s) 707, 734, 787, 878
PsuI RGATCY 2 cut(s) 8, 262
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 2 cut(s) 240, 780
SapI GCTCTTC 2 cut(s) 199, 797
SaqAI TTAA 3 cut(s) 582, 828, 1008
SatI GCNGC 4 cut(s) 53, 566, 836, 1164
Sau3AI GATC 5 cut(s) 8, 262, 364, 1011, 1231
Sau96I GGNCC 4 cut(s) 707, 734, 787, 878
SchI GAGTC 2 cut(s) 331, 1142
SduI GDGCHC 2 cut(s) 301, 809
SfaNI GCATC 5 cut(s) 319, 361, 686, 1034, 1164
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 2 cut(s) 240, 780
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 8 cut(s) 150, 305, 459, 540, 587, 740, 921, 1051
SsiI CCGC 4 cut(s) 53, 566, 835, 1166
SspMI CTAG 1 cut(s) 671
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 4 cut(s) 85, 511, 605, 1183
TaiI ACGT 1 cut(s) 1226
TaqI TCGA 1 cut(s) 1234
TasI AATT 8 cut(s) 150, 305, 459, 540, 587, 740, 921, 1051
TatI WGTACW 1 cut(s) 65
TauI GCSGC 3 cut(s) 55, 568, 838
TfiI GAWTC 1 cut(s) 746
Tru1I TTAA 3 cut(s) 582, 828, 1008
Tru9I TTAA 3 cut(s) 582, 828, 1008
TscAI CASTG 5 cut(s) 102, 399, 687, 1093, 1201
TseFI GTSAC 2 cut(s) 599, 1084
TseI GCWGC 1 cut(s) 1163
Tsp45I GTSAC 2 cut(s) 599, 1084
TspDTI ATGAA 5 cut(s) 224, 600, 708, 840, 987
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 5 cut(s) 102, 399, 687, 1093, 1201
VpaK11BI GGWCC 1 cut(s) 878
XapI RAATTY 3 cut(s) 540, 587, 1051
XceI RCATGY 3 cut(s) 175, 565, 1025
XmnI GAANNNNTTC 2 cut(s) 948, 951
XspI CTAG 1 cut(s) 671
ZraI GACGTC 1 cut(s) 1224
Zsp2I ATGCAT 4 cut(s) 37, 355, 1023, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.