Rmu_sc0039108.1_g000001

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039108.1
OG0009069
Physical Location & Seq
Reverse (-)
1 .. 728
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039108.1_g000001.1.cds

Sequence Viewer

Length: 255 bp
atggcgacggaggtgacgtgttgcgagcccaagttctggttttatttgcttgtgatcactggcctggtctgcttcgccggaatgatggccggccttactctgggcctcatgtccttgggcctcgtcgacctcgaggtcctcatgaagtctggccgccctcaggatcgcttacacgccgctaaaatctatccggtggtgaaaaatcagcatctgctactttgtacacttttaataggcaatgcgctagcgatggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS DUF21

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

6.7

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AbsI CCTCGAGG 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 154, 177
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 87, 151
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 3 cut(s) 36, 100, 160
AflIII ACRYGT 1 cut(s) 17
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 63
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 6 cut(s) 61, 87, 91, 103, 118, 151
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 3 cut(s) 103, 118, 136
AsuHPI GGTGA 2 cut(s) 25, 208
AsuNHI GCTAGC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 159
BanII GRGCYC 1 cut(s) 30
BccI CCATC 2 cut(s) 79, 244
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 54
BfaI CTAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 154, 177
BlsI GCNGC 2 cut(s) 155, 178
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 103, 118, 136
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 100, 160
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 36, 100, 160
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 78, 90, 191
BslI CCNNNNNNNGG 3 cut(s) 36, 100, 160
BsnI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 54, 163
BspACI CCGC 2 cut(s) 154, 177
BspANI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 54, 163
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 26, 91, 246
BstDEI CTNAG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 2 cut(s) 57, 166
BstMBI GATC 2 cut(s) 54, 163
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BtrI CACGTC 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 26, 91, 246
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 103, 118, 136
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 109, 142
CviJI RGCY 7 cut(s) 28, 63, 89, 93, 105, 120, 153
CviKI_1 RGCY 7 cut(s) 28, 63, 89, 93, 105, 120, 153
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 56, 165
DpnII GATC 2 cut(s) 54, 163
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 87, 151
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 112, 145
FaiI YATR 2 cut(s) 110, 143
FatI CATG 2 cut(s) 108, 141
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 154, 177
FriOI GRGCYC 1 cut(s) 30
FseI GGCCGGCC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 154, 177
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 154, 177
HaeIII GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
HapII CCGG 3 cut(s) 78, 90, 191
HhaI GCGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 112, 145
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HpaII CCGG 3 cut(s) 78, 90, 191
HphI GGTGA 2 cut(s) 25, 208
Hpy166II GTNNAC 2 cut(s) 127, 224
Hpy188III TCNNGA 2 cut(s) 142, 161
Hpy8I GTNNAC 2 cut(s) 127, 224
Hpy99I CGWCG 2 cut(s) 10, 128
HpyCH4IV ACGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 112, 145
HspAI GCGC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 2 cut(s) 54, 163
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 56, 165
MboI GATC 2 cut(s) 54, 163
MhlI GDGCHC 1 cut(s) 30
MnlI CCTC 7 cut(s) 4, 116, 127, 131, 140, 149, 168
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 1 cut(s) 230
MspI CCGG 3 cut(s) 78, 90, 191
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 69
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 2 cut(s) 54, 163
NgoMIV GCCGGC 1 cut(s) 89
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 112, 145
NmuCI GTSAC 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 129
PdiI GCCGGC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 2 cut(s) 155, 178
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 3 cut(s) 103, 118, 136
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 211
RigI GGCCGGCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 154, 177
Sau3AI GATC 2 cut(s) 54, 163
Sau96I GGNCC 3 cut(s) 103, 118, 136
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 15, 20, 132, 138
SfaNI GCATC 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 2 cut(s) 154, 177
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 126, 132
TatI WGTACW 1 cut(s) 221
TauI GCSGC 2 cut(s) 156, 179
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.