Rh6AG414200

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009069
Physical Location & Seq
Reverse (-)
60966382 .. 60967451
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG414200.1

Sequence Viewer

Length: 663 bp
ATGCCGCTATATGATATTCTTAATGAATTTCAGAAGGGTCACAGTCATATTGCTGTTGTCTATAAGGATGTAAAGGAAACACTAAAGAATGGCAAAGAGAGTGAAACACTAGAGGCATCACTGAGGAAAGATGAAAAACTGGGTGGCCCCACAGCTGAGACTAAGAGTTTGGGGCCAAAATTGGATTCAGACAATGCTCAGATAGATTTAGACCATAGTGATGGGGGTCAAAAAACTAAGAAGAGCCCATCAGCTACTCCTTCTTTTAAGAAGCGGCACAGAGGTTGTTCATTTTGTATTCTGGACATTGAGAATGGTCCCATTCCAGTATTCCCACCCAGTCAAGAGGTTGTTGGAGTAATTTCCATGGAGGATGTCATTGAAGAACTTCTTCAGGAAGAGATACTGGATGAAACAGATGAGTATGTCAATATCCATAACAGGATTAAGATCAATATGCATGCGTCTCAGGAAAAGGCTCCTTCCTTGAATTCACCCCAGCCTTCCCCAGAAGGGTCATCTGTCACTGACACCTCAGCGCTAACGGATTTAGGTTCCACTCAATATCAAGACTCTGGTAAGAATGCTGCGGATTTGATGCCAACAGTCTCAAACACCAGTGCGTATCAAGCTTCTGAAGCTGAGACGTCAAGGGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS DUF21

Protein Analysis

220

Amino Acids

24.04

Weight (kDa)

4.83

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 650
AciI CCGC 3 cut(s) 5, 274, 590
AcsI RAATTY 2 cut(s) 26, 490
AcuI CTGAAG 2 cut(s) 377, 657
AcyI GRCGYC 1 cut(s) 647
AfeI AGCGCT 1 cut(s) 540
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 2 cut(s) 383, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 4 cut(s) 155, 254, 632, 641
AluI AGCT 4 cut(s) 155, 254, 632, 641
Alw26I GTCTC 4 cut(s) 152, 471, 613, 638
Aor51HI AGCGCT 1 cut(s) 540
AoxI GGCC 2 cut(s) 145, 173
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 2 cut(s) 26, 490
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
Asp700I GAANNNNTTC 2 cut(s) 387, 390
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 3 cut(s) 146, 173, 317
AsuHPI GGTGA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 574
BccI CCATC 2 cut(s) 215, 256
BcoDI GTCTC 4 cut(s) 152, 471, 613, 638
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 542
BisI GCNGC 3 cut(s) 5, 275, 588
BlsI GCNGC 3 cut(s) 6, 276, 589
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 146, 173, 317
BmiI GGNNCC 5 cut(s) 148, 174, 319, 480, 556
BmrI ACTGGG 2 cut(s) 149, 333
BmsI GCATC 2 cut(s) 125, 588
BmuI ACTGGG 2 cut(s) 149, 333
Bpu10I CCTNAGC 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 5 cut(s) 144, 326, 339, 411, 618
Bse8I GATNNNNATC 1 cut(s) 449
BseCI ATCGAT 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 3 cut(s) 73, 379, 415
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMII CTCAG 6 cut(s) 113, 147, 212, 482, 549, 633
BseNI ACTGG 5 cut(s) 144, 326, 339, 411, 618
BseXI GCAGC 1 cut(s) 574
BseYI CCCAGC 1 cut(s) 498
BshFI GGCC 2 cut(s) 147, 175
BshVI ATCGAT 1 cut(s) 658
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 4 cut(s) 152, 471, 613, 638
BsmBI CGTCTC 2 cut(s) 471, 638
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 2 cut(s) 147, 175
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 450, 655
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 3 cut(s) 5, 274, 590
BspANI GGCC 2 cut(s) 147, 175
BspCNI CTCAG 6 cut(s) 114, 148, 211, 481, 548, 634
BspDI ATCGAT 1 cut(s) 658
BspLI GGNNCC 5 cut(s) 148, 174, 319, 480, 556
BspQI GCTCTTC 1 cut(s) 236
BsrI ACTGG 5 cut(s) 144, 326, 339, 411, 618
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 450, 655
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 2 cut(s) 44, 607
Bst6I CTCTTC 2 cut(s) 236, 393
BstACI GRCGYC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 8 cut(s) 122, 156, 162, 198, 237, 468, 535, 642
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 73, 379, 415
BstH2I RGCGCY 1 cut(s) 542
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 2 cut(s) 453, 658
BstMAI GTCTC 4 cut(s) 152, 471, 613, 638
BstMBI GATC 2 cut(s) 450, 655
BstMWI GCNNNNNNNGC 2 cut(s) 629, 638
BstNSI RCATGY 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 658
BsuRI GGCC 2 cut(s) 147, 175
BsuTUI ATCGAT 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 73, 379, 415
BtsIMutI CAGTG 3 cut(s) 119, 525, 625
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 3 cut(s) 146, 173, 317
ClaI ATCGAT 1 cut(s) 658
CseI GACGC 1 cut(s) 453
CviAII CATG 2 cut(s) 367, 461
CviJI RGCY 9 cut(s) 147, 155, 175, 246, 254, 479, 502, 632, 641
CviKI_1 RGCY 9 cut(s) 147, 155, 175, 246, 254, 479, 502, 632, 641
DdeI CTNAG 8 cut(s) 122, 156, 162, 198, 237, 468, 535, 642
DpnI GATC 2 cut(s) 452, 657
DpnII GATC 2 cut(s) 450, 655
Eam1104I CTCTTC 2 cut(s) 236, 393
EarI CTCTTC 2 cut(s) 236, 393
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 317
Eco47III AGCGCT 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 377, 657
EcoRI GAATTC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 366
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 2 cut(s) 471, 638
FaeI CATG 2 cut(s) 370, 464
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 303
FatI CATG 2 cut(s) 366, 460
Fnu4HI GCNGC 3 cut(s) 5, 275, 588
FokI GGATG 3 cut(s) 80, 386, 422
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 5, 275, 588
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 540
GluI GCNGC 3 cut(s) 5, 275, 588
GsaI CCCAGC 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 542
HaeIII GGCC 2 cut(s) 147, 175
HgaI GACGC 1 cut(s) 453
HhaI GCGC 1 cut(s) 541
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 2 cut(s) 370, 464
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 2 cut(s) 185, 572
HphI GGTGA 1 cut(s) 486
Hpy188I TCNGA 4 cut(s) 33, 190, 201, 637
Hpy188III TCNNGA 5 cut(s) 302, 344, 395, 470, 569
HpyAV CCTTC 5 cut(s) 28, 270, 492, 506, 513
HpyCH4III ACNGT 2 cut(s) 44, 607
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 638
HpyF3I CTNAG 8 cut(s) 122, 156, 162, 198, 237, 468, 535, 642
HpySE526I ACGT 1 cut(s) 647
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 2 cut(s) 370, 464
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 2 cut(s) 450, 655
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 2 cut(s) 125, 588
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 2 cut(s) 38, 523
MalI GATC 2 cut(s) 452, 657
MboI GATC 2 cut(s) 450, 655
MboII GAAGA 4 cut(s) 253, 383, 395, 410
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 4 cut(s) 26, 179, 360, 490
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 6 cut(s) 106, 117, 275, 340, 364, 544
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 2 cut(s) 387, 390
MseI TTAA 3 cut(s) 21, 267, 447
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 589
MwoI GCNNNNNNNGC 2 cut(s) 629, 638
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 450, 655
NlaIII CATG 2 cut(s) 370, 464
NlaIV GGNNCC 5 cut(s) 148, 174, 319, 480, 556
NmuCI GTSAC 2 cut(s) 38, 523
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 1 cut(s) 464
PaeI GCATGC 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 236
PctI GAATGC 1 cut(s) 589
PdmI GAANNNNTTC 2 cut(s) 387, 390
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 3 cut(s) 6, 276, 589
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 498
PspN4I GGNNCC 5 cut(s) 148, 174, 319, 480, 556
PspPI GGNCC 3 cut(s) 146, 173, 317
PvuII CAGCTG 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 21, 267, 447
SatI GCNGC 3 cut(s) 5, 275, 588
Sau3AI GATC 2 cut(s) 450, 655
Sau96I GGNCC 3 cut(s) 146, 173, 317
SchI GAGTC 1 cut(s) 566
SduI GDGCHC 1 cut(s) 248
SetI ASST 9 cut(s) 157, 256, 286, 351, 536, 556, 634, 643, 650
SfaNI GCATC 2 cut(s) 125, 588
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 219
SphI GCATGC 1 cut(s) 464
Sse9I AATT 4 cut(s) 26, 179, 360, 490
SsiI CCGC 3 cut(s) 5, 274, 590
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 44, 607
TaiI ACGT 1 cut(s) 650
TaqI TCGA 1 cut(s) 658
TasI AATT 4 cut(s) 26, 179, 360, 490
TauI GCSGC 2 cut(s) 7, 277
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 21, 267, 447
Tru9I TTAA 3 cut(s) 21, 267, 447
TscAI CASTG 3 cut(s) 126, 532, 625
TseFI GTSAC 2 cut(s) 38, 523
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 2 cut(s) 38, 523
TspDTI ATGAA 4 cut(s) 39, 147, 279, 426
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 3 cut(s) 126, 532, 625
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 26, 490
XceI RCATGY 1 cut(s) 464
XmnI GAANNNNTTC 2 cut(s) 387, 390
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 648
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.