Rmu_sc0035551.1_g000002

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035551.1
OG0009069
Physical Location & Seq
Reverse (-)
4815 .. 6444
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035551.1_g000002.1.cds

Sequence Viewer

Length: 891 bp
atgactcccatatcaaatgcattttcccttgatctggatgcacctcttactttggaaacactgaatgcgataatggcaatgggtcatagtagagttccggtttatgctgagaaccccagaaatataattggacttgttctggtcaaaaatctcttgatgattgatacagaagaaacagttactttgagaaaaatgatgataagaaaaattcctcgggtttcagaagacatgccgctatatgatattcttaatgaatttcagaagggtcacagtcatattgctgttgtctataaggatgtaaaggaaacactaaagaatggcaaagagagtgaaacactagaggcatcactgaggaaagatgaaaaactgggtggccccacagctgagactaagagtttggggccaaaattggattcagacaatgctcagatagatttagaccatagtgatgggggtaaaaaaactaagaagagcccatcagctactccttcttttaagaagcggcacagaggttgttcattttgtattctggacattgagaatggtcccattccagtattcccacccagtcaagaggttgttggagtaatttccatggaggatgtcattgaagaacttcttcaggaagagatactggatgaaacagatgagtatgtcaatatccataacaggattaagatcaatatgcatgcgtctcaggaaaaggctccttccttgaattcaccccagccttccccagaagggtcatctgtcactgacacctcagcgccgacggatttaggttccactcaatatcaagactctggtaagaatgctgcggatttgatgccaacagtctcaaacaccagtgcgtatcaagcttctgaagctgagacgtcaagggatcgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS DUF21

Protein Analysis

296

Amino Acids

32.53

Weight (kDa)

5.0

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 878
AciI CCGC 3 cut(s) 233, 502, 818
AcsI RAATTY 3 cut(s) 207, 254, 718
AcuI CTGAAG 2 cut(s) 605, 885
AcyI GRCGYC 1 cut(s) 875
AfiI CCNNNNNNNGG 2 cut(s) 34, 741
AgsI TTSAA 2 cut(s) 611, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 4 cut(s) 383, 482, 860, 869
AluI AGCT 4 cut(s) 383, 482, 860, 869
Alw26I GTCTC 4 cut(s) 380, 699, 841, 866
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 373, 401
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 3 cut(s) 207, 254, 718
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 2 cut(s) 615, 618
AspLEI GCGC 1 cut(s) 769
AspS9I GGNCC 3 cut(s) 374, 401, 545
AsuHPI GGTGA 1 cut(s) 714
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 763
BbvI GCAGC 1 cut(s) 802
BccI CCATC 2 cut(s) 443, 484
BcoDI GTCTC 4 cut(s) 380, 699, 841, 866
BfaI CTAG 1 cut(s) 338
BfoI RGCGCY 1 cut(s) 770
BisI GCNGC 3 cut(s) 233, 503, 816
BlsI GCNGC 3 cut(s) 234, 504, 817
Bme18I GGWCC 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 374, 401, 545
BmiI GGNNCC 5 cut(s) 376, 402, 547, 708, 784
BmrI ACTGGG 2 cut(s) 377, 561
BmsI GCATC 3 cut(s) 28, 353, 816
BmuI ACTGGG 2 cut(s) 377, 561
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 875
BsaJI CCNNGG 2 cut(s) 212, 594
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 741
Bse1I ACTGG 5 cut(s) 372, 554, 567, 639, 846
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 677
BseDI CCNNGG 2 cut(s) 212, 594
BseGI GGATG 4 cut(s) 43, 301, 607, 643
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 2 cut(s) 34, 741
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 7 cut(s) 99, 341, 375, 440, 710, 777, 861
BseNI ACTGG 5 cut(s) 372, 554, 567, 639, 846
BseXI GCAGC 1 cut(s) 802
BseYI CCCAGC 1 cut(s) 726
BshFI GGCC 2 cut(s) 375, 403
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 2 cut(s) 34, 741
BsmAI GTCTC 4 cut(s) 380, 699, 841, 866
BsmBI CGTCTC 2 cut(s) 699, 866
BsmFI GGGAC 1 cut(s) 531
BsmI GAATGC 2 cut(s) 70, 817
BsnI GGCC 2 cut(s) 375, 403
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 3 cut(s) 31, 678, 883
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 3 cut(s) 233, 502, 818
BspANI GGCC 2 cut(s) 375, 403
BspCNI CTCAG 7 cut(s) 100, 342, 376, 439, 709, 776, 862
BspLI GGNNCC 5 cut(s) 376, 402, 547, 708, 784
BspQI GCTCTTC 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 5 cut(s) 372, 554, 567, 639, 846
BssECI CCNNGG 2 cut(s) 212, 594
BssMI GATC 3 cut(s) 31, 678, 883
BssNI GRCGYC 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 178, 272, 835
Bst6I CTCTTC 2 cut(s) 464, 621
BstACI GRCGYC 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 9 cut(s) 108, 350, 384, 390, 426, 465, 696, 763, 870
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 4 cut(s) 43, 301, 607, 643
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 3 cut(s) 34, 681, 886
BstMAI GTCTC 4 cut(s) 380, 699, 841, 866
BstMBI GATC 3 cut(s) 31, 678, 883
BstMWI GCNNNNNNNGC 3 cut(s) 74, 857, 866
BstNSI RCATGY 2 cut(s) 232, 692
BstV1I GCAGC 1 cut(s) 802
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 375, 403
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 4 cut(s) 43, 301, 607, 643
BtsIMutI CAGTG 4 cut(s) 59, 347, 753, 853
Cac8I GCNNGC 1 cut(s) 690
CfoI GCGC 1 cut(s) 769
Cfr13I GGNCC 3 cut(s) 374, 401, 545
CseI GACGC 1 cut(s) 681
CviAII CATG 3 cut(s) 229, 595, 689
CviJI RGCY 9 cut(s) 375, 383, 403, 474, 482, 707, 730, 860, 869
CviKI_1 RGCY 9 cut(s) 375, 383, 403, 474, 482, 707, 730, 860, 869
DdeI CTNAG 9 cut(s) 108, 350, 384, 390, 426, 465, 696, 763, 870
DpnI GATC 3 cut(s) 33, 680, 885
DpnII GATC 3 cut(s) 31, 678, 883
Eam1104I CTCTTC 2 cut(s) 464, 621
EarI CTCTTC 2 cut(s) 464, 621
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 605, 885
Eco88I CYCGRG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 594
EcoT22I ATGCAT 2 cut(s) 22, 690
EcoT38I GRGCYC 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 594
Esp3I CGTCTC 2 cut(s) 699, 866
FaeI CATG 3 cut(s) 232, 598, 692
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 228, 594, 688
Fnu4HI GCNGC 3 cut(s) 233, 503, 816
FokI GGATG 4 cut(s) 50, 308, 614, 650
FriOI GRGCYC 1 cut(s) 476
Fsp4HI GCNGC 3 cut(s) 233, 503, 816
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 768
GluI GCNGC 3 cut(s) 233, 503, 816
GsaI CCCAGC 1 cut(s) 730
HaeII RGCGCY 1 cut(s) 770
HaeIII GGCC 2 cut(s) 375, 403
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 681
HhaI GCGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 875
Hin1II CATG 3 cut(s) 232, 598, 692
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 3 cut(s) 4, 413, 800
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 714
Hpy188I TCNGA 5 cut(s) 223, 261, 418, 429, 865
Hpy188III TCNNGA 7 cut(s) 35, 154, 530, 572, 623, 698, 797
Hpy99I CGWCG 1 cut(s) 775
HpyAV CCTTC 5 cut(s) 256, 498, 720, 734, 741
HpyCH4III ACNGT 3 cut(s) 178, 272, 835
HpyCH4IV ACGT 1 cut(s) 875
HpyCH4V TGCA 3 cut(s) 20, 41, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 857, 866
HpyF3I CTNAG 9 cut(s) 108, 350, 384, 390, 426, 465, 696, 763, 870
HpySE526I ACGT 1 cut(s) 875
Hsp92I GRCGYC 1 cut(s) 875
Hsp92II CATG 3 cut(s) 232, 598, 692
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 3 cut(s) 31, 678, 883
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 3 cut(s) 28, 353, 816
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 3 cut(s) 178, 266, 751
MalI GATC 3 cut(s) 33, 680, 885
MboI GATC 3 cut(s) 31, 678, 883
MboII GAAGA 6 cut(s) 182, 236, 481, 611, 623, 638
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 6 cut(s) 126, 207, 254, 407, 588, 718
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 8 cut(s) 54, 222, 334, 345, 503, 568, 592, 772
Mph1103I ATGCAT 2 cut(s) 22, 690
MroXI GAANNNNTTC 2 cut(s) 615, 618
MseI TTAA 4 cut(s) 249, 495, 675, 889
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 98
Mva1269I GAATGC 2 cut(s) 70, 817
MwoI GCNNNNNNNGC 3 cut(s) 74, 857, 866
NcoI CCATGG 1 cut(s) 594
NdeII GATC 3 cut(s) 31, 678, 883
NlaIII CATG 3 cut(s) 232, 598, 692
NlaIV GGNNCC 5 cut(s) 376, 402, 547, 708, 784
NmuCI GTSAC 2 cut(s) 266, 751
NsiI ATGCAT 2 cut(s) 22, 690
NspI RCATGY 2 cut(s) 232, 692
PaeI GCATGC 1 cut(s) 692
PciSI GCTCTTC 1 cut(s) 464
PctI GAATGC 2 cut(s) 70, 817
PdmI GAANNNNTTC 2 cut(s) 615, 618
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 234, 504, 817
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 726
PspN4I GGNNCC 5 cut(s) 376, 402, 547, 708, 784
PspPI GGNCC 3 cut(s) 374, 401, 545
PvuII CAGCTG 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 4 cut(s) 249, 495, 675, 889
SatI GCNGC 3 cut(s) 233, 503, 816
Sau3AI GATC 3 cut(s) 31, 678, 883
Sau96I GGNCC 3 cut(s) 374, 401, 545
SchI GAGTC 1 cut(s) 794
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 3 cut(s) 28, 353, 816
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 447
SphI GCATGC 1 cut(s) 692
Sse9I AATT 6 cut(s) 126, 207, 254, 407, 588, 718
SsiI CCGC 3 cut(s) 233, 502, 818
SspMI CTAG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 178, 272, 835
TaiI ACGT 1 cut(s) 878
TasI AATT 6 cut(s) 126, 207, 254, 407, 588, 718
TauI GCSGC 2 cut(s) 235, 505
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 4 cut(s) 249, 495, 675, 889
Tru9I TTAA 4 cut(s) 249, 495, 675, 889
TscAI CASTG 4 cut(s) 66, 354, 760, 853
TseFI GTSAC 2 cut(s) 266, 751
TseI GCWGC 1 cut(s) 815
Tsp45I GTSAC 2 cut(s) 266, 751
TspDTI ATGAA 4 cut(s) 267, 375, 507, 654
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 4 cut(s) 66, 354, 760, 853
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 3 cut(s) 207, 254, 718
XceI RCATGY 2 cut(s) 232, 692
XmnI GAANNNNTTC 2 cut(s) 615, 618
XspI CTAG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 876
Zsp2I ATGCAT 2 cut(s) 22, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.