Rh6AG414300

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009069
Physical Location & Seq
Reverse (-)
60967489 .. 60969480
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG414300.1

Sequence Viewer

Length: 786 bp
ATGGCGACGGAGGTGACGTGTTGCGAGCCCAAGTTCTGGTTTTATTTGCTTGTGATCATTGGCCTGGTCTGCTTCGCCGGAATGATGGCCGGCCTTACTCTGGGCCTCATGTCCTTGGGCCTCGTCGACCTCGAGGTCCTCATGAAGTCTGGCCGCCCTCAGGATCGCTTACACGCCGCTAAAATCTATCCGGTGGTGAAAAATCAGCATCTGCTACTTTGTACACTTTTAATAGGCAACGCGTTAGCGATGGAGGCTCTTCCTGTCTTCTTGGACAGTCTTGTGCCTCCTTGGGCAGCTATTGCCATATCCGTCACTCTCATTCTTTTGTTTGGAGAGATAATGCCGCAAGCTGTGTGCACTCGCTATGGATTGACTGTTGGGGCAACACTGGCACCATTTGTGCGCGCTGGGAAAGGTGGGGATCTCACACATGATGAGACTACCATCATTGCTGGGGCACTTCAATTGACTGAAAAGACTGCAAAAGATGCCATGACTCCCATATCAAATGCATTTTCCCTTGATCTGGATGCACCTCTTACTTTGGAAACACTGAATGCGATAATGGCAATGGGTCATAGTAGAGTTCCGGTTTATGCTGAGAACCCCAGAAATATAATTGGACTTGTTCTGGTCAAAAATCTCTTGATGATTGATACAGAAGAAACAGTTACTTTGAGAAAAATGATGATAAGAAAAATTCCTCGGTATGAAAGTACCTCAGTATTTTTAGTCTTTTATTATCTGAAACAAGACATGAGTGCCTGTCATTTTTGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS DUF21

Protein Analysis

261

Amino Acids

28.65

Weight (kDa)

6.2

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 17 - 136 1.2e-21 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AbsI CCTCGAGG 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 126
AccII CGCG 2 cut(s) 242, 408
AciI CCGC 3 cut(s) 154, 177, 347
AclWI GGATC 2 cut(s) 171, 432
AcoI YGGCCR 2 cut(s) 87, 151
AcsI RAATTY 1 cut(s) 702
AfaI GTAC 2 cut(s) 223, 721
AfiI CCNNNNNNNGG 4 cut(s) 36, 100, 160, 529
AflIII ACRYGT 2 cut(s) 17, 240
AgsI TTSAA 1 cut(s) 467
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 299, 353
AluI AGCT 2 cut(s) 299, 353
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 434
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 2 cut(s) 171, 432
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 6 cut(s) 61, 87, 91, 103, 118, 151
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 702
AspLEI GCGC 2 cut(s) 408, 410
AspS9I GGNCC 4 cut(s) 103, 118, 136, 780
AsuHPI GGTGA 2 cut(s) 25, 208
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 136, 780
AxyI CCTNAGG 1 cut(s) 159
BaeGI GKGCMC 2 cut(s) 362, 463
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 308
BccI CCATC 3 cut(s) 79, 244, 455
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 434
BisI GCNGC 4 cut(s) 154, 177, 297, 347
BlsI GCNGC 4 cut(s) 155, 178, 298, 348
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 136, 780
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 4 cut(s) 103, 118, 136, 780
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 3 cut(s) 217, 481, 523
BpiI GAAGAC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 114, 290, 707
BsaWI WCCGGW 2 cut(s) 190, 592
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 100, 160, 529
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 396
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 450, 579
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 114, 290, 707
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 4 cut(s) 36, 100, 160, 529
BseMI GCAATG 2 cut(s) 450, 579
BseMII CTCAG 3 cut(s) 173, 594, 738
BseNI ACTGG 1 cut(s) 396
BsePI GCGCGC 1 cut(s) 406
BseSI GKGCMC 2 cut(s) 362, 463
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 2 cut(s) 410, 455
Bsh1236I CGCG 2 cut(s) 242, 408
BshFI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 4 cut(s) 78, 90, 191, 593
BslI CCNNNNNNNGG 4 cut(s) 36, 100, 160, 529
BsmAI GTCTC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 30, 362, 463
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 4 cut(s) 54, 163, 424, 526
BspACI CCGC 3 cut(s) 154, 177, 347
BspANI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BspCNI CTCAG 3 cut(s) 172, 595, 737
BspFNI CGCG 2 cut(s) 242, 408
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 2 cut(s) 171, 432
BspQI GCTCTTC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 450, 579
BsrFI RCCGGY 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 114, 290, 707
BssHII GCGCGC 1 cut(s) 406
BssMI GATC 4 cut(s) 54, 163, 424, 526
BssT1I CCWWGG 2 cut(s) 114, 290
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 3 cut(s) 278, 379, 673
Bst6I CTCTTC 1 cut(s) 264
BstAPI GCANNNNNTGC 2 cut(s) 302, 491
BstAUI TGTACA 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 26, 91, 351, 408
BstDEI CTNAG 3 cut(s) 159, 603, 724
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 2 cut(s) 242, 408
BstHHI GCGC 2 cut(s) 408, 410
BstKTI GATC 4 cut(s) 57, 166, 427, 529
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 4 cut(s) 54, 163, 424, 526
BstMWI GCNNNNNNNGC 6 cut(s) 69, 254, 302, 392, 491, 569
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 362, 463
BstUI CGCG 2 cut(s) 242, 408
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 389, 554
Cac8I GCNNGC 4 cut(s) 26, 91, 351, 408
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 141
CfoI GCGC 2 cut(s) 408, 410
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 103, 118, 136, 780
Csp6I GTAC 2 cut(s) 222, 720
CviAII CATG 5 cut(s) 109, 142, 434, 496, 760
CviQI GTAC 2 cut(s) 222, 720
DdeI CTNAG 3 cut(s) 159, 603, 724
DpnI GATC 4 cut(s) 56, 165, 426, 528
DpnII GATC 4 cut(s) 54, 163, 424, 526
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 87, 151
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 114, 290
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 136, 780
Eco81I CCTNAGG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 114, 290
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 114, 290
FaeI CATG 5 cut(s) 112, 145, 437, 499, 763
FatI CATG 5 cut(s) 108, 141, 433, 495, 759
FbaI TGATCA 1 cut(s) 54
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 154, 177, 297, 347
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 30
FseI GGCCGGCC 1 cut(s) 93
Fsp4HI GCNGC 4 cut(s) 154, 177, 297, 347
GlaI GCGC 2 cut(s) 407, 409
GluI GCNGC 4 cut(s) 154, 177, 297, 347
GsaI CCCAGC 2 cut(s) 414, 459
HaeIII GGCC 6 cut(s) 63, 89, 93, 105, 120, 153
HapII CCGG 4 cut(s) 78, 90, 191, 593
HhaI GCGC 2 cut(s) 408, 410
Hin1II CATG 5 cut(s) 112, 145, 437, 499, 763
Hin6I GCGC 2 cut(s) 406, 408
HinP1I GCGC 2 cut(s) 406, 408
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 499
HpaII CCGG 4 cut(s) 78, 90, 191, 593
HphI GGTGA 2 cut(s) 25, 208
Hpy166II GTNNAC 3 cut(s) 127, 224, 360
Hpy188I TCNGA 1 cut(s) 750
Hpy188III TCNNGA 5 cut(s) 142, 161, 530, 649, 783
Hpy8I GTNNAC 3 cut(s) 127, 224, 360
Hpy99I CGWCG 2 cut(s) 10, 128
HpyCH4III ACNGT 3 cut(s) 278, 379, 673
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 360, 485, 515, 536
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 254, 302, 392, 491, 569
HpyF3I CTNAG 3 cut(s) 159, 603, 724
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 5 cut(s) 112, 145, 437, 499, 763
HspAI GCGC 2 cut(s) 406, 408
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 4 cut(s) 54, 163, 424, 526
LguI GCTCTTC 1 cut(s) 264
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 3 cut(s) 217, 481, 523
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 13, 313, 673
MalI GATC 4 cut(s) 56, 165, 426, 528
MboI GATC 4 cut(s) 54, 163, 424, 526
MboII GAAGA 3 cut(s) 251, 259, 677
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 30, 362, 463
MluCI AATT 3 cut(s) 467, 621, 702
MluI ACGCGT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 493
Mph1103I ATGCAT 1 cut(s) 517
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 1 cut(s) 230
MspI CCGG 4 cut(s) 78, 90, 191, 593
MspR9I CCNGG 1 cut(s) 65
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 242, 408
MwoI GCNNNNNNNGC 6 cut(s) 69, 254, 302, 392, 491, 569
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 4 cut(s) 54, 163, 424, 526
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 5 cut(s) 112, 145, 437, 499, 763
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 13, 313
NsiI ATGCAT 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 141
PauI GCGCGC 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 129
PctI GAATGC 1 cut(s) 565
PdiI GCCGGC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 4 cut(s) 155, 178, 298, 348
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 2 cut(s) 410, 455
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 4 cut(s) 103, 118, 136, 780
PspPPI RGGWCCY 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 424
PteI GCGCGC 1 cut(s) 406
RigI GGCCGGCC 1 cut(s) 93
RsaI GTAC 2 cut(s) 223, 721
RsaNI GTAC 2 cut(s) 222, 720
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 4 cut(s) 154, 177, 297, 347
Sau3AI GATC 4 cut(s) 54, 163, 424, 526
Sau96I GGNCC 4 cut(s) 103, 118, 136, 780
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 3 cut(s) 30, 362, 463
SetI ASST 9 cut(s) 15, 20, 132, 138, 301, 355, 421, 541, 725
SfaNI GCATC 3 cut(s) 217, 481, 523
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 2 cut(s) 136, 780
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 467, 621, 702
SsiI CCGC 3 cut(s) 154, 177, 347
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 114, 290
TaaI ACNGT 3 cut(s) 278, 379, 673
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 126, 132
TasI AATT 3 cut(s) 467, 621, 702
TatI WGTACW 1 cut(s) 221
TauI GCSGC 3 cut(s) 156, 179, 349
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 396, 561
TseFI GTSAC 2 cut(s) 13, 313
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 2 cut(s) 13, 313
TspDTI ATGAA 2 cut(s) 158, 729
TspGWI ACGGA 2 cut(s) 23, 301
TspRI CASTG 2 cut(s) 396, 561
Van91I CCANNNNNTGG 1 cut(s) 36
VneI GTGCAC 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 136, 780
XapI RAATTY 1 cut(s) 702
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.