AT1G47655

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012880
Physical Location & Seq
Forward (+)
17525342 .. 17526308
967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47655.1

Sequence Viewer

Length: 630 bp
ATGCCGTCGGAACCAAACCAAACCCGACCCACCAGAGTTCAGCCCTCAACGGCGGCTTACCCACCGCCAAATCTGGCTGAGCCTCTTCCTTGTCCTCGCTGCAACTCCACCACCACCAAGTTCTGTTACTACAACAACTATAACCTCGCTCAGCCTCGCTACTACTGCAAATCTTGCCGCCGTTACTGGACTCAAGGTGGTACACTCCGTGACGTCCCCGTCGGTGGTGGAACTCGTCGAAGCTCCTCAAAACGTCACCGTTCTTTCTCCACCACTGCCACCTCCTCTTCCTCCTCTTCTTCCGTCATCACCACCACGACACAAGAACCAGCCACGACTGAAGCGAGTCAAACTAAGGTTACTAATTTAATTTCAGGTCATGGAAGCTTTGCTTCTCTGTTAGGTTTAGGAAGTGGAAATGGTGGGTTGGATTACGGGTTTGGGTACGGGTACGGGCTTGAGGAGATGAGTATTGGGTATCTTGGAGATTCTTCCGTAGGAGAGATTCCGGTGGTTGATGGTTGTGGTGGTGACACGTGGCAGATTGGGGAGATTGAAGGTAAAAGTGGAGGAGACAGTTTGATATGGCCTGGTCTTGAGATCTCAATGCAAACCAACGATGTTAAGTGA

Protein Analysis

209

Amino Acids

22.29

Weight (kDa)

6.71

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 28 - 83 3.3e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 1 cut(s) 216
AciI CCGC 3 cut(s) 53, 65, 178
AcuI CTGAAG 1 cut(s) 360
AcvI CACGTG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 202, 446, 452
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 1 cut(s) 557
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 2 cut(s) 243, 387
AluI AGCT 2 cut(s) 243, 387
Alw26I GTCTC 1 cut(s) 567
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 248, 301, 542
BbrPI CACGTG 1 cut(s) 537
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 512
BceAI ACGGC 2 cut(s) 66, 165
BciT130I CCWGG 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 567
BglII AGATCT 1 cut(s) 600
BisI GCNGC 3 cut(s) 54, 100, 178
BlpI GCTNAGC 2 cut(s) 78, 150
BlsI GCNGC 3 cut(s) 55, 101, 179
Bme1390I CCNGG 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 591
Bpu1102I GCTNAGC 2 cut(s) 78, 150
BpuEI CTTGAG 3 cut(s) 177, 479, 617
BsaAI YACGTR 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 69, 164
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 5 cut(s) 235, 274, 283, 476, 585
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 589
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 589
Bsp143I GATC 1 cut(s) 600
Bsp1720I GCTNAGC 2 cut(s) 78, 150
BspACI CCGC 3 cut(s) 53, 65, 178
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 2 cut(s) 70, 163
BspLI GGNNCC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 191
BssMI GATC 1 cut(s) 600
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 260, 578
Bst6I CTCTTC 3 cut(s) 90, 292, 301
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 537
BstDEI CTNAG 3 cut(s) 78, 150, 354
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 2 cut(s) 165, 174
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Csp6I GTAC 3 cut(s) 201, 445, 451
CviAII CATG 1 cut(s) 380
CviQI GTAC 3 cut(s) 201, 445, 451
DdeI CTNAG 3 cut(s) 78, 150, 354
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
DraIII CACNNNGTG 1 cut(s) 209
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 90, 292, 301
EarI CTCTTC 3 cut(s) 90, 292, 301
Eco57I CTGAAG 1 cut(s) 360
Eco72I CACGTG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 589
FaeI CATG 1 cut(s) 383
FaiI YATR 3 cut(s) 141, 381, 586
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 54, 100, 178
Fsp4HI GCNGC 3 cut(s) 54, 100, 178
GluI GCNGC 3 cut(s) 54, 100, 178
HaeIII GGCC 1 cut(s) 589
HapII CCGG 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 383
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 4 cut(s) 190, 346, 488, 505
HpaII CCGG 1 cut(s) 509
HphI GGTGA 3 cut(s) 248, 301, 542
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 3 cut(s) 10, 224, 240
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 2 cut(s) 260, 578
HpyCH4IV ACGT 3 cut(s) 213, 253, 536
HpyCH4V TGCA 3 cut(s) 102, 168, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 174
HpyF3I CTNAG 3 cut(s) 78, 150, 354
HpySE526I ACGT 3 cut(s) 213, 253, 536
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 383
Kzo9I GATC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 46, 59, 172, 342, 360, 522, 576, 603
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 3 cut(s) 213, 253, 536
MaeIII GTNAC 6 cut(s) 125, 182, 209, 254, 358, 530
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 5 cut(s) 77, 279, 288, 291, 483
MflI RGATCY 1 cut(s) 600
MluCI AATT 2 cut(s) 364, 369
MlyI GAGTC 2 cut(s) 184, 355
MmeI TCCRAC 1 cut(s) 408
MseI TTAA 2 cut(s) 368, 624
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 165, 174
NdeII GATC 1 cut(s) 600
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 3 cut(s) 209, 254, 530
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 2 cut(s) 488, 505
PkrI GCNGC 3 cut(s) 55, 101, 179
PleI GAGTC 2 cut(s) 184, 354
PmaCI CACGTG 1 cut(s) 537
PmlI CACGTG 1 cut(s) 537
PpsI GAGTC 2 cut(s) 184, 354
Ppu21I YACGTR 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 589
PspCI CACGTG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 3 cut(s) 202, 446, 452
RsaNI GTAC 3 cut(s) 201, 445, 451
SaqAI TTAA 2 cut(s) 368, 624
SatI GCNGC 3 cut(s) 54, 100, 178
Sau3AI GATC 1 cut(s) 600
SchI GAGTC 2 cut(s) 184, 355
ScrFI CCNGG 1 cut(s) 591
SmlI CTYRAG 3 cut(s) 192, 458, 596
SmoI CTYRAG 3 cut(s) 192, 458, 596
Sse9I AATT 2 cut(s) 364, 369
SsiI CCGC 3 cut(s) 53, 65, 178
StyD4I CCNGG 1 cut(s) 589
TaaI ACNGT 2 cut(s) 260, 578
TaiI ACGT 3 cut(s) 216, 256, 539
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 364, 369
TauI GCSGC 2 cut(s) 56, 180
TfiI GAWTC 2 cut(s) 488, 505
Tru1I TTAA 2 cut(s) 368, 624
Tru9I TTAA 2 cut(s) 368, 624
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 3 cut(s) 209, 254, 530
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 3 cut(s) 209, 254, 530
TspGWI ACGGA 3 cut(s) 197, 292, 484
TspRI CASTG 1 cut(s) 280
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.