Rroxscaffold_7G00168210

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012880
Physical Location & Seq
Forward (+)
9119914 .. 9120708
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168210.1

Sequence Viewer

Length: 795 bp
ATGCCTGCTGCTTACCCACCCCCTTCCTCGGCCGCCCCGCTTCCCTGCCCGCGCTGCAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACCCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACCCACTTCCGACTCTGCTGTGGAAAAACCCGATTTGCCCTCCGACCAACAGCAACAACAACAACTTCTCAACCTGAACGACAACGTTACGGGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACCTGGGTTTTTGTCCCTCGGTGGGTACGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCTTTTGCTGGTGTCTATGGTGTTCCTGGGACTGCTGCTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATGATCATGAAGGTCAAGGTGGTGGATTGGTTGATTGGCCGGAGGCTCAGATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGGTGGTGGTGGTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACTGACCCTTGTCTTAATTTCCCTGCATTCTGA

Protein Analysis

264

Amino Acids

27.62

Weight (kDa)

5.93

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 13 - 67 8.6e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 506
AccII CGCG 2 cut(s) 52, 219
AclI AACGTT 1 cut(s) 375
AcoI YGGCCR 2 cut(s) 30, 668
AcvI CACGTG 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 3 cut(s) 455, 461, 503
AfiI CCNNNNNNNGG 3 cut(s) 28, 179, 450
AflIII ACRYGT 1 cut(s) 609
AjnI CCWGG 2 cut(s) 430, 574
AluBI AGCT 3 cut(s) 243, 701, 752
AluI AGCT 3 cut(s) 243, 701, 752
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 3 cut(s) 30, 156, 668
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 5 cut(s) 8, 54, 129, 584, 749
AspLEI GCGC 3 cut(s) 54, 221, 509
AspS9I GGNCC 2 cut(s) 156, 157
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 3 cut(s) 206, 256, 395
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BauI CACGAG 2 cut(s) 147, 269
BbrPI CACGTG 1 cut(s) 612
BbvI GCAGC 4 cut(s) 41, 116, 571, 761
BccI CCATC 2 cut(s) 535, 613
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 2 cut(s) 432, 576
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 510
BlpI GCTNAGC 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 432, 576, 595
BmgT120I GGNCC 2 cut(s) 156, 157
BmiI GGNNCC 4 cut(s) 157, 158, 485, 508
BmrFI CCNGG 3 cut(s) 432, 576, 595
BoxI GACNNNNGTC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 595
BsaAI YACGTR 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 5 cut(s) 27, 431, 445, 478, 575
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 179, 450
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 2 cut(s) 432, 576
BseDI CCNNGG 5 cut(s) 27, 431, 445, 478, 575
BseLI CCNNNNNNNGG 3 cut(s) 28, 179, 450
BseMII CTCAG 3 cut(s) 119, 434, 692
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 3 cut(s) 214, 217, 226
BseSI GKGCMC 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 4 cut(s) 41, 116, 571, 761
Bsh1236I CGCG 2 cut(s) 52, 219
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 32, 158, 670
BshNI GGYRCC 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 594, 671
BslFI GGGAC 4 cut(s) 155, 244, 427, 592
BslI CCNNNNNNNGG 3 cut(s) 28, 179, 450
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 4 cut(s) 155, 244, 427, 592
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 3 cut(s) 32, 158, 670
Bso31I GGTCTC 1 cut(s) 266
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 634
Bsp1720I GCTNAGC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 478
BspANI GGCC 3 cut(s) 32, 158, 670
BspCNI CTCAG 3 cut(s) 118, 433, 691
BspFNI CGCG 2 cut(s) 52, 219
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 4 cut(s) 157, 158, 485, 508
BspT107I GGYRCC 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 5 cut(s) 27, 431, 445, 478, 575
BssMI GATC 1 cut(s) 634
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 2 cut(s) 147, 269
BssT1I CCWWGG 1 cut(s) 478
Bst2BI CACGAG 2 cut(s) 147, 269
Bst2UI CCWGG 2 cut(s) 432, 576
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 6, 50, 245, 699
BstDEI CTNAG 3 cut(s) 105, 420, 678
BstDSI CCRYGG 1 cut(s) 478
BstFNI CGCG 2 cut(s) 52, 219
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 3 cut(s) 54, 221, 509
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 634
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 6 cut(s) 54, 120, 129, 135, 189, 515
BstNI CCWGG 2 cut(s) 432, 576
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 3 cut(s) 430, 574, 593
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 2 cut(s) 52, 219
BstV1I GCAGC 4 cut(s) 41, 116, 571, 761
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 3 cut(s) 32, 158, 670
BtgI CCRYGG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 4 cut(s) 6, 50, 245, 699
CciI TCATGA 1 cut(s) 637
CfoI GCGC 3 cut(s) 54, 221, 509
Cfr13I GGNCC 2 cut(s) 156, 157
Csp6I GTAC 3 cut(s) 454, 460, 502
CviAII CATG 2 cut(s) 479, 638
CviQI GTAC 3 cut(s) 454, 460, 502
DdeI CTNAG 3 cut(s) 105, 420, 678
DinI GGCGCC 1 cut(s) 508
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
EaeI YGGCCR 2 cut(s) 30, 668
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 266
Eco52I CGGCCG 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 612
EcoO109I RGGNCCY 2 cut(s) 156, 157
EcoRII CCWGG 2 cut(s) 430, 574
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 508
EheI GGCGCC 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 2 cut(s) 482, 641
FaiI YATR 3 cut(s) 480, 567, 639
FaqI GGGAC 4 cut(s) 155, 244, 427, 592
FatI CATG 2 cut(s) 478, 637
FauI CCCGC 3 cut(s) 45, 57, 119
FbaI TGATCA 1 cut(s) 634
FriOI GRGCYC 1 cut(s) 160
GlaI GCGC 3 cut(s) 53, 220, 508
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 3 cut(s) 32, 158, 670
HapII CCGG 2 cut(s) 594, 671
HhaI GCGC 3 cut(s) 54, 221, 509
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 2 cut(s) 482, 641
Hin6I GCGC 3 cut(s) 52, 219, 507
HinP1I GCGC 3 cut(s) 52, 219, 507
HinfI GANTC 4 cut(s) 145, 302, 682, 689
HpaII CCGG 2 cut(s) 594, 671
HphI GGTGA 3 cut(s) 206, 256, 395
Hpy188I TCNGA 6 cut(s) 301, 334, 405, 534, 681, 794
Hpy188III TCNNGA 3 cut(s) 422, 638, 686
Hpy99I CGWCG 2 cut(s) 179, 538
HpyAV CCTTC 4 cut(s) 33, 258, 380, 635
HpyCH4IV ACGT 3 cut(s) 168, 375, 611
HpyCH4V TGCA 3 cut(s) 57, 123, 788
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 120, 129, 135, 189, 515
HpyF3I CTNAG 3 cut(s) 105, 420, 678
HpySE526I ACGT 3 cut(s) 168, 375, 611
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 2 cut(s) 482, 641
HspAI GCGC 3 cut(s) 52, 219, 507
KasI GGCGCC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 1 cut(s) 634
Lsp1109I GCAGC 4 cut(s) 41, 116, 571, 761
MaeII ACGT 3 cut(s) 168, 375, 611
MaeIII GTNAC 2 cut(s) 376, 494
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 3 cut(s) 246, 582, 749
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 778
Mly113I GGCGCC 1 cut(s) 507
MlyI GAGTC 2 cut(s) 139, 296
MmeI TCCRAC 4 cut(s) 255, 324, 357, 557
MseI TTAA 1 cut(s) 777
MspA1I CMGCKG 2 cut(s) 701, 752
MspI CCGG 2 cut(s) 594, 671
MspR9I CCNGG 3 cut(s) 432, 576, 595
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 2 cut(s) 432, 576
MvnI CGCG 2 cut(s) 52, 219
MwoI GCNNNNNNNGC 6 cut(s) 54, 120, 129, 135, 189, 515
NarI GGCGCC 1 cut(s) 507
NciI CCSGG 1 cut(s) 595
NcoI CCATGG 1 cut(s) 478
NdeII GATC 1 cut(s) 634
NlaIII CATG 2 cut(s) 482, 641
NlaIV GGNNCC 4 cut(s) 157, 158, 485, 508
NmeAIII GCCGAG 1 cut(s) 8
PagI TCATGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 682, 689
PleI GAGTC 2 cut(s) 139, 296
PluTI GGCGCC 1 cut(s) 510
PmaCI CACGTG 1 cut(s) 612
PmlI CACGTG 1 cut(s) 612
PpsI GAGTC 2 cut(s) 139, 296
Ppu21I YACGTR 1 cut(s) 612
PshAI GACNNNNGTC 1 cut(s) 771
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 430, 574
PspCI CACGTG 1 cut(s) 612
PspGI CCWGG 2 cut(s) 430, 574
PspN4I GGNNCC 4 cut(s) 157, 158, 485, 508
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 156, 157
PvuII CAGCTG 2 cut(s) 701, 752
RsaI GTAC 3 cut(s) 455, 461, 503
RsaNI GTAC 3 cut(s) 454, 460, 502
SaqAI TTAA 1 cut(s) 777
Sau3AI GATC 1 cut(s) 634
Sau96I GGNCC 2 cut(s) 156, 157
SchI GAGTC 2 cut(s) 139, 296
ScrFI CCNGG 3 cut(s) 432, 576, 595
SduI GDGCHC 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 508
Sse9I AATT 1 cut(s) 778
SspDI GGCGCC 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 430, 574, 593
StyI CCWWGG 1 cut(s) 478
TaiI ACGT 3 cut(s) 171, 378, 614
TaqI TCGA 1 cut(s) 687
TasI AATT 1 cut(s) 778
TauI GCSGC 5 cut(s) 35, 135, 138, 183, 518
TfiI GAWTC 2 cut(s) 682, 689
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 712
TseI GCWGC 5 cut(s) 8, 54, 129, 584, 749
TspDTI ATGAA 2 cut(s) 428, 654
TspGWI ACGGA 2 cut(s) 551, 682
TspRI CASTG 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.