Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012880

Physical Location & Seq

Genomic Coordinates Forward (+)

34732476 .. 34735048

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G388600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCCGTTTGAATCTGAAGACAATAATCAAAAGCCACCCTCAACGACGACGACGACAAAAGTCCAACAAAGCATGGGTCACCAGCCACCGCCCCAAACCGACCCGCTTCACTGCCCGCGCTGCGATTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCAAGGCGGTACCCTCCGCGACGTCCCCGTCGGCGGCGGCTCCCGCAAGAACTCCAAGCGGTCTCGCTCCACCACTTGCTCCTCCTCTTCCTGCTCGCCTTCCTCTTCCTCGCTCACCCAAGAGGTCACCTCAGTCGCTACCGCGAAACCCGTTTCCTTATCCGCCGAAGTGAAGCCAGAGCCGGCCTCAGATGTTGACCATTTGATGGACCTGAACGAGAACGTGGTCGGGAACGGGGGTTTTACTTCGCTGTTGAATTCTCAGGGGCCACCTCCACCTGGGTTCCTGGCGCTTGGTGGGTACGGGTACGGGTACGGGTACGGGTCGGCGTTTGGTCACGGGCTTGATGAAGTGGGTGATGCTTTTGGCCATGGCGGCAAAGGGGTTTGGGCTTTTCCTGAGGTCGGTGATTTTCCAAGTACTGTCATTGACCATAACAATAACAATGGTGCTCCTTCCGGGTGCAACACGTGGCAGATGACGACCAGTGCTGATGGTGGATTTGTCGATGGGGATTGCTTTGCTTGGCCGGAGCTTGAGATTTCCATGATGCCTGCTTCAGGCAAAGCTTTCAAATGCCACCGACCTGGGACCACGTGTTGCATGGTTCATTGTGTTGTGGATGATGCCGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

284

Amino Acids

30.14

Weight (kDa)

5.67

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47655
fragaria_vesca	FvH4_2g40660
malus_domestica	MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica	Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis	pycom08g03230 pycom15g03180
rosa_chinensis	RchiOBHm_Chr6g0300001
rosa_laevigata	RLG00000011373
rosa_multiflora	Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168210
rosa_rugosa	Rorug06G0293400
rosa_samantha	Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AatII	GACGTC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccII	CGCG	3 cut(s)	118, 231, 356
AcoI	YGGCCR	2 cut(s)	580, 740
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	2 cut(s)	36, 756
AcvI	CACGTG	2 cut(s)	684, 810
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	6 cut(s)	223, 515, 521, 527, 533, 634
AfiI	CCNNNNNNNGG	5 cut(s)	245, 418, 491, 617, 773
AflIII	ACRYGT	2 cut(s)	681, 809
AgsI	TTSAA	3 cut(s)	11, 469, 787
AjnI	CCWGG	3 cut(s)	490, 498, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	748, 782, 849
AluI	AGCT	3 cut(s)	748, 782, 849
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	279
AoxI	GGCC	4 cut(s)	396, 479, 580, 740
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
Asp718I	GGTACC	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	120, 505
AspS9I	GGNCC	4 cut(s)	210, 421, 479, 804
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	5 cut(s)	71, 319, 331, 581, 632
AvaII	GGWCC	3 cut(s)	210, 421, 804
AxyI	CCTNAGG	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	221
BbrPI	CACGTG	2 cut(s)	684, 810
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	3 cut(s)	412, 701, 716
BciT130I	CCWGG	3 cut(s)	492, 500, 801
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	588
BisI	GCNGC	6 cut(s)	121, 199, 202, 247, 250, 589
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	6 cut(s)	122, 200, 203, 248, 251, 590
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	4 cut(s)	492, 500, 673, 801
Bme18I	GGWCC	3 cut(s)	210, 421, 804
BmgT120I	GGNCC	4 cut(s)	210, 421, 479, 804
BmiI	GGNNCC	6 cut(s)	212, 223, 253, 480, 497, 805
BmrFI	CCNGG	4 cut(s)	492, 500, 673, 801
BmsI	GCATC	3 cut(s)	562, 753, 829
BoxI	GACNNNNGTC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	4 cut(s)	326, 358, 383, 415
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	2 cut(s)	684, 810
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	214, 491, 583, 800
Bsc4I	CCNNNNNNNGG	5 cut(s)	245, 418, 491, 617, 773
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	212, 699
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	3 cut(s)	492, 500, 801
BseDI	CCNNGG	4 cut(s)	214, 491, 583, 800
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	5 cut(s)	245, 418, 491, 617, 773
BseMII	CTCAG	5 cut(s)	185, 357, 414, 488, 603
BseNI	ACTGG	2 cut(s)	212, 699
BseRI	GAGGAG	2 cut(s)	283, 286
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	3 cut(s)	118, 231, 356
BshFI	GGCC	4 cut(s)	398, 481, 582, 742
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	3 cut(s)	395, 672, 743
BslFI	GGGAC	2 cut(s)	221, 817
BslI	CCNNNNNNNGG	5 cut(s)	245, 418, 491, 617, 773
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	221, 817
BsnI	GGCC	4 cut(s)	398, 481, 582, 742
Bso31I	GGTCTC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp1720I	GCTNAGC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	583
BspANI	GGCC	4 cut(s)	398, 481, 582, 742
BspCNI	CTCAG	5 cut(s)	184, 356, 413, 487, 604
BspFNI	CGCG	3 cut(s)	118, 231, 356
BspLI	GGNNCC	6 cut(s)	212, 223, 253, 480, 497, 805
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	212, 699
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	4 cut(s)	214, 491, 583, 800
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	214, 583
Bst2UI	CCWGG	3 cut(s)	492, 500, 801
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	2 cut(s)	304, 322
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstBAI	YACGTR	2 cut(s)	684, 810
BstC8I	GCNNGC	4 cut(s)	116, 308, 396, 768
BstDEI	CTNAG	5 cut(s)	171, 343, 400, 474, 612
BstDSI	CCRYGG	1 cut(s)	583
BstEII	GGTNACC	2 cut(s)	77, 337
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	841
BstFNI	CGCG	3 cut(s)	118, 231, 356
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	120, 505
BstMAI	GTCTC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 186, 195, 255, 588
BstNI	CCWGG	3 cut(s)	492, 500, 801
BstPAI	GACNNNNGTC	1 cut(s)	59
BstPI	GGTNACC	2 cut(s)	77, 337
BstSCI	CCNGG	4 cut(s)	490, 498, 671, 799
BstUI	CGCG	3 cut(s)	118, 231, 356
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	800
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	4 cut(s)	398, 481, 582, 742
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 706
Cac8I	GCNNGC	4 cut(s)	116, 308, 396, 768
CfoI	GCGC	2 cut(s)	120, 505
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	4 cut(s)	210, 421, 479, 804
Csp6I	GTAC	6 cut(s)	222, 514, 520, 526, 532, 633
CviAII	CATG	4 cut(s)	73, 584, 760, 817
CviQI	GTAC	6 cut(s)	222, 514, 520, 526, 532, 633
DdeI	CTNAG	5 cut(s)	171, 343, 400, 474, 612
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	2 cut(s)	580, 740
Eam1104I	CTCTTC	2 cut(s)	304, 322
EarI	CTCTTC	2 cut(s)	304, 322
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	214, 583
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	3 cut(s)	210, 421, 804
Eco57I	CTGAAG	2 cut(s)	36, 756
Eco72I	CACGTG	2 cut(s)	684, 810
Eco81I	CCTNAGG	1 cut(s)	612
Eco91I	GGTNACC	2 cut(s)	77, 337
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO65I	GGTNACC	2 cut(s)	77, 337
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	490, 498, 799
EcoT14I	CCWWGG	2 cut(s)	214, 583
ErhI	CCWWGG	2 cut(s)	214, 583
FaeI	CATG	4 cut(s)	76, 587, 763, 820
FaiI	YATR	5 cut(s)	74, 585, 648, 761, 818
FaqI	GGGAC	2 cut(s)	221, 817
FatI	CATG	4 cut(s)	72, 583, 759, 816
FauI	CCCGC	4 cut(s)	111, 123, 185, 263
Fnu4HI	GCNGC	6 cut(s)	121, 199, 202, 247, 250, 589
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	6 cut(s)	121, 199, 202, 247, 250, 589
GlaI	GCGC	2 cut(s)	119, 504
GluI	GCNGC	6 cut(s)	121, 199, 202, 247, 250, 589
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	398, 481, 582, 742
HapII	CCGG	3 cut(s)	395, 672, 743
HhaI	GCGC	2 cut(s)	120, 505
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	76, 587, 763, 820
Hin6I	GCGC	2 cut(s)	118, 503
HinP1I	GCGC	2 cut(s)	118, 503
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	2 cut(s)	11, 125
HpaII	CCGG	3 cut(s)	395, 672, 743
HphI	GGTGA	5 cut(s)	71, 319, 331, 581, 632
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	16, 403
Hpy188III	TCNNGA	2 cut(s)	442, 611
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	5 cut(s)	49, 52, 55, 236, 245
HpyAV	CCTTC	2 cut(s)	321, 678
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	4 cut(s)	234, 435, 683, 809
HpyCH4V	TGCA	3 cut(s)	189, 678, 816
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 186, 195, 255, 588
HpyF3I	CTNAG	5 cut(s)	171, 343, 400, 474, 612
HpySE526I	ACGT	4 cut(s)	234, 435, 683, 809
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	76, 587, 763, 820
HspAI	GCGC	2 cut(s)	118, 503
KpnI	GGTACC	1 cut(s)	225
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
LmnI	GCTCC	5 cut(s)	257, 284, 296, 670, 745
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	3 cut(s)	562, 753, 829
MaeII	ACGT	4 cut(s)	234, 435, 683, 809
MaeIII	GTNAC	3 cut(s)	77, 337, 548
MboII	GAAGA	3 cut(s)	29, 291, 309
MhlI	GDGCHC	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	88
Mox20I	TGGCCA	1 cut(s)	582
MroNI	GCCGGC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	3 cut(s)	395, 672, 743
MspR9I	CCNGG	4 cut(s)	492, 500, 673, 801
MvaI	CCWGG	3 cut(s)	492, 500, 801
MvnI	CGCG	3 cut(s)	118, 231, 356
MwoI	GCNNNNNNNGC	5 cut(s)	120, 186, 195, 255, 588
NaeI	GCCGGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	583
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	76, 587, 763, 820
NlaIV	GGNNCC	6 cut(s)	212, 223, 253, 480, 497, 805
NmuCI	GTSAC	3 cut(s)	77, 337, 548
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	11, 125
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	6 cut(s)	122, 200, 203, 248, 251, 590
PmaCI	CACGTG	2 cut(s)	684, 810
PmlI	CACGTG	2 cut(s)	684, 810
Ppu21I	YACGTR	2 cut(s)	684, 810
PshAI	GACNNNNGTC	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	490, 498, 799
PspCI	CACGTG	2 cut(s)	684, 810
PspEI	GGTNACC	2 cut(s)	77, 337
PspGI	CCWGG	3 cut(s)	490, 498, 799
PspN4I	GGNNCC	6 cut(s)	212, 223, 253, 480, 497, 805
PspPI	GGNCC	4 cut(s)	210, 421, 479, 804
RsaI	GTAC	6 cut(s)	223, 515, 521, 527, 533, 634
RsaNI	GTAC	6 cut(s)	222, 514, 520, 526, 532, 633
SatI	GCNGC	6 cut(s)	121, 199, 202, 247, 250, 589
Sau96I	GGNCC	4 cut(s)	210, 421, 479, 804
ScaI	AGTACT	1 cut(s)	634
ScrFI	CCNGG	4 cut(s)	492, 500, 673, 801
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	3 cut(s)	562, 753, 829
SinI	GGWCC	3 cut(s)	210, 421, 804
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	490, 498, 671, 799
StyI	CCWWGG	2 cut(s)	214, 583
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	4 cut(s)	237, 438, 686, 812
TaqI	TCGA	1 cut(s)	720
TasI	AATT	1 cut(s)	469
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	5 cut(s)	201, 204, 249, 252, 591
TfiI	GAWTC	2 cut(s)	11, 125
TscAI	CASTG	2 cut(s)	116, 706
TseFI	GTSAC	3 cut(s)	77, 337, 548
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	3 cut(s)	77, 337, 548
TspDTI	ATGAA	2 cut(s)	576, 812
TspRI	CASTG	2 cut(s)	116, 706
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	3 cut(s)	210, 421, 804
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
ZraI	GACGTC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.