FvH4_2g40660

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012880
Physical Location & Seq
Forward (+)
28936810 .. 28938544
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40660.t1

Sequence Viewer

Length: 837 bp
ATGTCCACTACTCCTCCGGGATTTCCAGACCTCAAACGGCCGAGGGTAATCCAGAGCATGGCTGCTGCTTATCCACCGCCCGCGTCCTCCGCCGAGAAACTTCCCTGCCCTCGCTGCAACTCCACCGCAACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGCCACTTCTGCCGAGACTGCCGTCGCTACTGGACTCATGGTGGGACCCTCCGCGACGTCCCCGTCGGCGGCGGAACTCGCAAGAAACCCAGGCTCTCTCATCACCACCGCGCGTCCCCTTCAAACTCCTCCAGCTCGCCTTCCTCTTCCTCCCTCACCCACGAGACAAAACCCGCTTCCGACTCGGCGGTTGAAAAGCCGGATTTGCCCTCCAACCAAACACAACTGCAACTCCTGAACCTGAACGACAACGCTGGGAGTGAAACAGGGCTTTCGTTTTCGCCCATGATGATGATGAACTCTCAGGAACAACCTGGGTTTCTGTCCCTCGGTGGGTACGGGTACGTGTACGGTTCGGGTTACGGGTCGGGGTTTGTCCATGGGTTCCAGCAAGATTACGGGTACGGCGCCGGAGCATCAGGGGTTGATTTTCCGGCTGAGATTGTCTATGGTGCTCCTGTGGCTGCTTCTTCTTCCGGGTTCGACATGAACACGTGGCAGATGGCGGTTGCTGATCATGGAGGTCAGGGTGGTGGGATGGTTAATTGGCCGGAGGTTCAGATTCTCAATTCCATGCCAGCTGTCAGTGGTGGTGGTGGTGCTCTCAAGGAAGAAAAGGTGGCTGATTCCCCAGCTAGCTCTTGTCTTGATTTCCCTGCATTCTGA

Protein Analysis

279

Amino Acids

29.5

Weight (kDa)

6.7

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 33 - 86 9.1e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 58
AccII CGCG 4 cut(s) 83, 225, 282, 284
AcoI YGGCCR 2 cut(s) 38, 719
AcvI CACGTG 1 cut(s) 666
AcyI GRCGYC 2 cut(s) 228, 579
AfaI GTAC 4 cut(s) 509, 515, 521, 575
AfiI CCNNNNNNNGG 3 cut(s) 58, 239, 504
AflIII ACRYGT 2 cut(s) 516, 663
AgsI TTSAA 2 cut(s) 294, 365
AjnI CCWGG 2 cut(s) 260, 484
AluBI AGCT 4 cut(s) 306, 752, 806, 810
AluI AGCT 4 cut(s) 306, 752, 806, 810
Alw21I GWGCWC 2 cut(s) 628, 775
Alw26I GTCTC 2 cut(s) 180, 329
AoxI GGCC 2 cut(s) 38, 719
ApeKI GCWGC 4 cut(s) 62, 65, 114, 635
AspLEI GCGC 2 cut(s) 284, 581
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 2 cut(s) 18, 649
AsuHPI GGTGA 2 cut(s) 266, 319
AsuNHI GCTAGC 1 cut(s) 806
AvaII GGWCC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 578
BauI CACGAG 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 666
Bbv12I GWGCWC 2 cut(s) 628, 775
BbvI GCAGC 4 cut(s) 49, 52, 101, 622
BccI CCATC 2 cut(s) 667, 703
BceAI ACGGC 3 cut(s) 53, 177, 592
BciT130I CCWGG 2 cut(s) 262, 486
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 2 cut(s) 18, 649
BcoDI GTCTC 2 cut(s) 180, 329
BfaI CTAG 1 cut(s) 807
BfoI RGCGCY 1 cut(s) 582
BisI GCNGC 5 cut(s) 63, 66, 115, 241, 636
BlsI GCNGC 5 cut(s) 64, 67, 116, 242, 637
Bme1390I CCNGG 4 cut(s) 18, 262, 486, 649
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 4 cut(s) 217, 218, 557, 580
BmrFI CCNGG 4 cut(s) 18, 262, 486, 649
BmsI GCATC 1 cut(s) 596
BmtI GCTAGC 1 cut(s) 810
BoxI GACNNNNGTC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 2 cut(s) 18, 649
BsaAI YACGTR 2 cut(s) 517, 666
BsaHI GRCGYC 2 cut(s) 228, 579
BsaJI CCNNGG 5 cut(s) 41, 260, 485, 499, 550
BsaXI ACNNNNNCTCC 5 cut(s) 28, 146, 176, 387, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 239, 504
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 2 cut(s) 262, 486
BseDI CCNNGG 5 cut(s) 41, 260, 485, 499, 550
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 3 cut(s) 58, 239, 504
BseMII CTCAG 2 cut(s) 488, 600
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 289
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 49, 52, 101, 622
BseYI CCCAGC 3 cut(s) 165, 425, 802
Bsh1236I CGCG 4 cut(s) 83, 225, 282, 284
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 40, 721
BshNI GGYRCC 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 628, 775
BsiSI CCGG 6 cut(s) 17, 371, 582, 605, 648, 722
BslFI GGGAC 4 cut(s) 215, 229, 271, 481
BslI CCNNNNNNNGG 3 cut(s) 58, 239, 504
BsmAI GTCTC 2 cut(s) 180, 329
BsmFI GGGAC 4 cut(s) 215, 229, 271, 481
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 2 cut(s) 40, 721
Bsp1286I GDGCHC 2 cut(s) 628, 775
Bsp143I GATC 1 cut(s) 685
Bsp19I CCATGG 1 cut(s) 550
BspANI GGCC 2 cut(s) 40, 721
BspCNI CTCAG 2 cut(s) 487, 601
BspFNI CGCG 4 cut(s) 83, 225, 282, 284
BspLI GGNNCC 4 cut(s) 217, 218, 557, 580
BspOI GCTAGC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 578
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 5 cut(s) 41, 260, 485, 499, 550
BssMI GATC 1 cut(s) 685
BssNI GRCGYC 2 cut(s) 228, 579
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 262, 486
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 2 cut(s) 228, 579
BstBAI YACGTR 2 cut(s) 517, 666
BstC8I GCNNGC 4 cut(s) 81, 308, 750, 808
BstDEI CTNAG 2 cut(s) 474, 609
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 1 cut(s) 714
BstFNI CGCG 4 cut(s) 83, 225, 282, 284
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 284, 581
BstKTI GATC 1 cut(s) 688
BstMAI GTCTC 2 cut(s) 180, 329
BstMBI GATC 1 cut(s) 685
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 7 cut(s) 89, 114, 180, 189, 249, 376, 632
BstNI CCWGG 2 cut(s) 262, 486
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 4 cut(s) 16, 260, 484, 647
BstUI CGCG 4 cut(s) 83, 225, 282, 284
BstV1I GCAGC 4 cut(s) 49, 52, 101, 622
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 40, 721
BtgI CCRYGG 1 cut(s) 550
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 4 cut(s) 81, 308, 750, 808
CfoI GCGC 2 cut(s) 284, 581
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 2 cut(s) 72, 273
Csp6I GTAC 4 cut(s) 508, 514, 520, 574
CviAII CATG 7 cut(s) 58, 209, 457, 551, 658, 689, 745
CviQI GTAC 4 cut(s) 508, 514, 520, 574
DdeI CTNAG 2 cut(s) 474, 609
DinI GGCGCC 1 cut(s) 580
DpnI GATC 1 cut(s) 687
DpnII GATC 1 cut(s) 685
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 38, 719
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
EciI GGCGGA 2 cut(s) 79, 258
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 216
Eco52I CGGCCG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 260, 484
EcoT14I CCWWGG 1 cut(s) 550
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 7 cut(s) 61, 212, 460, 554, 661, 692, 748
FaiI YATR 8 cut(s) 59, 210, 458, 552, 621, 659, 690, 746
FaqI GGGAC 4 cut(s) 215, 229, 271, 481
FatI CATG 7 cut(s) 57, 208, 456, 550, 657, 688, 744
FauI CCCGC 2 cut(s) 88, 352
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 63, 66, 115, 241, 636
FokI GGATG 1 cut(s) 721
Fsp4HI GCNGC 5 cut(s) 63, 66, 115, 241, 636
FspBI CTAG 1 cut(s) 807
GlaI GCGC 2 cut(s) 283, 580
GluI GCNGC 5 cut(s) 63, 66, 115, 241, 636
GsaI CCCAGC 3 cut(s) 169, 429, 806
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 2 cut(s) 40, 721
HapII CCGG 6 cut(s) 17, 371, 582, 605, 648, 722
HgaI GACGC 2 cut(s) 72, 273
HhaI GCGC 2 cut(s) 284, 581
Hin1I GRCGYC 2 cut(s) 228, 579
Hin1II CATG 7 cut(s) 61, 212, 460, 554, 661, 692, 748
Hin6I GCGC 2 cut(s) 282, 579
HinP1I GCGC 2 cut(s) 282, 579
HinfI GANTC 4 cut(s) 205, 353, 733, 797
HpaII CCGG 6 cut(s) 17, 371, 582, 605, 648, 722
HphI GGTGA 2 cut(s) 266, 319
Hpy166II GTNNAC 2 cut(s) 6, 520
Hpy188I TCNGA 3 cut(s) 352, 732, 836
Hpy188III TCNNGA 5 cut(s) 26, 52, 406, 476, 818
Hpy8I GTNNAC 2 cut(s) 6, 520
Hpy99I CGWCG 3 cut(s) 198, 230, 239
HpyAV CCTTC 2 cut(s) 300, 321
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 3 cut(s) 228, 516, 665
HpyCH4V TGCA 3 cut(s) 117, 400, 830
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 114, 180, 189, 249, 376, 632
HpyF3I CTNAG 2 cut(s) 474, 609
HpySE526I ACGT 3 cut(s) 228, 516, 665
Hsp92I GRCGYC 2 cut(s) 228, 579
Hsp92II CATG 7 cut(s) 61, 212, 460, 554, 661, 692, 748
HspAI GCGC 2 cut(s) 282, 579
KasI GGCGCC 1 cut(s) 578
KflI GGGWCCC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 1 cut(s) 685
LmnI GCTCC 2 cut(s) 584, 631
Lsp1109I GCAGC 4 cut(s) 49, 52, 101, 622
LweI GCATC 1 cut(s) 596
MaeI CTAG 1 cut(s) 807
MaeII ACGT 3 cut(s) 228, 516, 665
MaeIII GTNAC 1 cut(s) 530
MalI GATC 1 cut(s) 687
MboI GATC 1 cut(s) 685
MboII GAAGA 4 cut(s) 309, 633, 636, 794
MhlI GDGCHC 2 cut(s) 628, 775
MluCI AATT 2 cut(s) 715, 739
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 2 cut(s) 199, 347
MmeI TCCRAC 2 cut(s) 375, 408
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 6 cut(s) 17, 371, 582, 605, 648, 722
MspR9I CCNGG 4 cut(s) 18, 262, 486, 649
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 262, 486
MvnI CGCG 4 cut(s) 83, 225, 282, 284
MwoI GCNNNNNNNGC 7 cut(s) 89, 114, 180, 189, 249, 376, 632
NarI GGCGCC 1 cut(s) 579
NciI CCSGG 2 cut(s) 18, 649
NcoI CCATGG 1 cut(s) 550
NdeII GATC 1 cut(s) 685
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 7 cut(s) 61, 212, 460, 554, 661, 692, 748
NlaIV GGNNCC 4 cut(s) 217, 218, 557, 580
NmeAIII GCCGAG 4 cut(s) 66, 118, 209, 335
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 2 cut(s) 733, 797
PflMI CCANNNNNTGG 1 cut(s) 58
PfoI TCCNGGA 1 cut(s) 16
PkrI GCNGC 5 cut(s) 64, 67, 116, 242, 637
PleI GAGTC 2 cut(s) 199, 347
PluTI GGCGCC 1 cut(s) 582
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 2 cut(s) 199, 347
Ppu21I YACGTR 2 cut(s) 517, 666
PpuMI RGGWCCY 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 260, 484
PspCI CACGTG 1 cut(s) 666
PspFI CCCAGC 3 cut(s) 165, 425, 802
PspGI CCWGG 2 cut(s) 260, 484
PspN4I GGNNCC 4 cut(s) 217, 218, 557, 580
PspPI GGNCC 1 cut(s) 216
PspPPI RGGWCCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 4 cut(s) 509, 515, 521, 575
RsaNI GTAC 4 cut(s) 508, 514, 520, 574
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 5 cut(s) 63, 66, 115, 241, 636
Sau3AI GATC 1 cut(s) 685
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 2 cut(s) 199, 347
ScrFI CCNGG 4 cut(s) 18, 262, 486, 649
SduI GDGCHC 2 cut(s) 628, 775
SfaNI GCATC 1 cut(s) 596
SfoI GGCGCC 1 cut(s) 580
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 2 cut(s) 715, 739
SspDI GGCGCC 1 cut(s) 578
SspMI CTAG 1 cut(s) 807
StyD4I CCNGG 4 cut(s) 16, 260, 484, 647
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 3 cut(s) 231, 519, 668
TaqI TCGA 1 cut(s) 654
TasI AATT 2 cut(s) 715, 739
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 2 cut(s) 733, 797
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 1 cut(s) 763
TseI GCWGC 4 cut(s) 62, 65, 114, 635
TspDTI ATGAA 2 cut(s) 482, 674
TspRI CASTG 1 cut(s) 763
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 216
XspI CTAG 1 cut(s) 807
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.