Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012880

Physical Location & Seq

Genomic Coordinates Reverse (-)

44544461 .. 44546144

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0293400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTTTCCATCAAAACAAGCCCTTTTCTTTTGCTCTGCTCTGCTTTTCTTCACAATCCTTGCCTCCTTCCCCTCTGTAATCACAGCTGCGGATTACACAGCCTTGGTCTACAAGGGTTGTGCTAATCAAAAATTCCAAGACTCAAATGGGATTTACACCCAAAACCTCAAATCTCTATTCAACTCTCTAGTATCTTCAGCCCAGCAGCAAAAGACCTTCTTCACCACCACCTCCGGTGACTCCACAAATGCAATCATGGGTCTCTATCAGTGCAGAGGAGACCTCTCCACAGCTGATTGCGCCACCTGTGTCACAAAGCTTCCATCTTTAGCCCAAAAATACTGTGAAAAAGCCATAGCAGCTAGAGTCCAGCTCAGTGGGTGCTACTTGCGCTATGAACTTTCTGGGTTTAAGCAGGTTTCAGGGACACAGCTGCTGTACAAGATTTGCGGGTCGAGTCGGTCTAGTGGGTCTGCTGAGTTTGAAAAGAAAAGGGACTCTGCTTTTGACAAATTGGAAGGTGGGATCAAGAATGGTAGTGTGTTGTTCTATACTGGGAGCTATGAGTTGGTTTATGTTTTGGGCCAGTGTGAGGGTGATTTGAGCAACAGTGATTGTGGGGATTGTGTCAAAAGTGCTACTGAACAAGCCGATTCAGAGTGTGGTGATTCAGTTTCTGGGCAGATTTATCTGCACAAGTGCTACATCAGCTACAGCTACTATGCTAATGGCCTCCCAACCTTAACTTCTTCATCAGGGACTGTAGGGTCTAACCATCACACAACACAGAAGACAGTAGCCATTGTTGTGGGAGGTGTAGCAGCTGTGGGGTTTGTATTTGTATGCTTGATGTTTATCAAGTCTCTGTTAAAGAAGAAGCGTGGTGCCAAACATGGAGACTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

303

Amino Acids

32.73

Weight (kDa)

8.43

Isoelectric Point (pI)

24.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 135	5.2e-19	Salt stress response/antifungal
Stress-antifung	PF01657	151 - 241	1.6e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47655
fragaria_vesca	FvH4_2g40660
malus_domestica	MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica	Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis	pycom08g03230 pycom15g03180
rosa_chinensis	RchiOBHm_Chr6g0300001
rosa_laevigata	RLG00000011373
rosa_multiflora	Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168210
rosa_rugosa	Rorug06G0293400
rosa_samantha	Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	769
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	2 cut(s)	92, 453
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	2 cut(s)	184, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	733, 765
Alw26I	GTCTC	4 cut(s)	269, 276, 870, 894
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	3 cut(s)	439, 680, 764
AoxI	GGCC	2 cut(s)	586, 733
ApeKI	GCWGC	5 cut(s)	89, 208, 362, 436, 824
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
AspLEI	GCGC	2 cut(s)	305, 396
AspS9I	GGNCC	1 cut(s)	586
AsuHPI	GGTGA	4 cut(s)	217, 251, 611, 680
BanI	GGYRCC	1 cut(s)	887
BbsI	GAAGAC	1 cut(s)	800
BbvI	GCAGC	5 cut(s)	76, 220, 374, 423, 836
BccI	CCATC	3 cut(s)	19, 334, 786
BcoDI	GTCTC	4 cut(s)	269, 276, 870, 894
BfaI	CTAG	3 cut(s)	191, 366, 468
BfmI	CTRYAG	2 cut(s)	715, 765
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	5 cut(s)	90, 209, 363, 437, 825
BlsI	GCNGC	5 cut(s)	91, 210, 364, 438, 826
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	889
BmrI	ACTGGG	1 cut(s)	567
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	800
BplI	GAGNNNNNCTC	4 cut(s)	270, 302, 360, 392
BsaBI	GATNNNNATC	1 cut(s)	857
BsaI	GGTCTC	2 cut(s)	269, 276
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	562, 589
Bse8I	GATNNNNATC	1 cut(s)	857
BseDI	CCNNGG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	857
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	391, 471
BseNI	ACTGG	2 cut(s)	562, 589
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	5 cut(s)	76, 220, 374, 423, 836
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	295, 680
BshFI	GGCC	2 cut(s)	588, 735
BshNI	GGYRCC	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	3 cut(s)	442, 512, 775
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	4 cut(s)	269, 276, 870, 894
BsmFI	GGGAC	3 cut(s)	442, 512, 775
BsnI	GGCC	2 cut(s)	588, 735
Bso31I	GGTCTC	2 cut(s)	269, 276
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	528
BspACI	CCGC	2 cut(s)	92, 453
BspANI	GGCC	2 cut(s)	588, 735
BspCNI	CTCAG	2 cut(s)	390, 472
BspLI	GGNNCC	1 cut(s)	889
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	887
BspTNI	GGTCTC	2 cut(s)	269, 276
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	562, 589
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	4 cut(s)	347, 614, 766, 799
BstAUI	TGTACA	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	377, 480
BstHHI	GCGC	2 cut(s)	305, 396
BstKTI	GATC	1 cut(s)	531
BstMAI	GTCTC	4 cut(s)	269, 276, 870, 894
BstMBI	GATC	1 cut(s)	528
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 362, 393, 711
BstSFI	CTRYAG	2 cut(s)	715, 765
BstV1I	GCAGC	5 cut(s)	76, 220, 374, 423, 836
BstV2I	GAAGAC	1 cut(s)	800
BstXI	CCANNNNNNTGG	2 cut(s)	380, 811
BsuRI	GGCC	2 cut(s)	588, 735
BtsIMutI	CAGTG	4 cut(s)	278, 385, 596, 619
BveI	ACCTGC	1 cut(s)	409
CaiI	CAGNNNCTG	3 cut(s)	439, 680, 764
CfoI	GCGC	2 cut(s)	305, 396
Cfr13I	GGNCC	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	259, 896
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	377, 480
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
DrdI	GACNNNNNNGTC	1 cut(s)	769
DseDI	GACNNNNNNGTC	1 cut(s)	769
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	269, 276
Eco57I	CTGAAG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	262, 899
FaiI	YATR	9 cut(s)	260, 359, 399, 555, 567, 579, 726, 847, 897
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	3 cut(s)	442, 512, 775
FatI	CATG	2 cut(s)	258, 895
FauI	CCCGC	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	90, 209, 363, 437, 825
Fsp4HI	GCNGC	5 cut(s)	90, 209, 363, 437, 825
FspBI	CTAG	3 cut(s)	191, 366, 468
GlaI	GCGC	2 cut(s)	304, 395
GluI	GCNGC	5 cut(s)	90, 209, 363, 437, 825
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	588, 735
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	305, 396
Hin1II	CATG	2 cut(s)	262, 899
Hin6I	GCGC	2 cut(s)	303, 394
HinP1I	GCGC	2 cut(s)	303, 394
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	7 cut(s)	143, 242, 369, 460, 500, 656, 671
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	4 cut(s)	217, 251, 611, 680
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	79, 229, 515
HpyCH4III	ACNGT	4 cut(s)	347, 614, 766, 799
HpyCH4V	TGCA	3 cut(s)	254, 276, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 362, 393, 711
HpyF3I	CTNAG	2 cut(s)	377, 480
Hsp92II	CATG	2 cut(s)	262, 899
HspAI	GCGC	2 cut(s)	303, 394
Kzo9I	GATC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	561
Lsp1109I	GCAGC	5 cut(s)	76, 220, 374, 423, 836
MaeI	CTAG	3 cut(s)	191, 366, 468
MaeIII	GTNAC	2 cut(s)	239, 313
MalI	GATC	1 cut(s)	530
MboI	GATC	1 cut(s)	528
MboII	GAAGA	6 cut(s)	43, 189, 214, 744, 805, 889
MluCI	AATT	2 cut(s)	134, 515
MlyI	GAGTC	5 cut(s)	137, 236, 378, 469, 494
MnlI	CCTC	9 cut(s)	76, 85, 179, 244, 272, 296, 589, 746, 809
MseI	TTAA	3 cut(s)	414, 746, 872
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	4 cut(s)	89, 296, 436, 827
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	302, 362, 393, 711
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	2 cut(s)	262, 899
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	2 cut(s)	239, 313
PfeI	GAWTC	2 cut(s)	656, 671
PkrI	GCNGC	5 cut(s)	91, 210, 364, 438, 826
PleI	GAGTC	5 cut(s)	137, 236, 377, 468, 494
PpsI	GAGTC	5 cut(s)	137, 236, 377, 468, 494
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	889
PspPI	GGNCC	1 cut(s)	586
PstNI	CAGNNNCTG	3 cut(s)	439, 680, 764
PvuII	CAGCTG	4 cut(s)	89, 296, 436, 827
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	3 cut(s)	414, 746, 872
SatI	GCNGC	5 cut(s)	90, 209, 363, 437, 825
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	5 cut(s)	137, 236, 378, 469, 494
SfcI	CTRYAG	2 cut(s)	715, 765
SmiMI	CAYNNNNRTG	1 cut(s)	809
Sse9I	AATT	2 cut(s)	134, 515
SsiI	CCGC	2 cut(s)	92, 453
SspMI	CTAG	3 cut(s)	191, 366, 468
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	347, 614, 766, 799
TaqI	TCGA	1 cut(s)	458
TaqII	GACCGA	1 cut(s)	453
TasI	AATT	2 cut(s)	134, 515
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	656, 671
Tru1I	TTAA	3 cut(s)	414, 746, 872
Tru9I	TTAA	3 cut(s)	414, 746, 872
TscAI	CASTG	4 cut(s)	278, 385, 596, 619
TseFI	GTSAC	2 cut(s)	239, 313
TseI	GCWGC	5 cut(s)	89, 208, 362, 436, 824
Tsp45I	GTSAC	2 cut(s)	239, 313
TspDTI	ATGAA	2 cut(s)	414, 744
TspRI	CASTG	4 cut(s)	278, 385, 596, 619
XapI	RAATTY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	3 cut(s)	191, 366, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.